Wall clock time and date at job start Mon Mar 30 2020 03:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31439 * 1 3 3 Si 1.86803 * 119.99911 * 2 1 4 4 H 1.48491 * 109.47073 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47430 * 300.00551 * 3 2 1 6 6 H 1.48501 * 109.47099 * 60.00239 * 3 2 1 7 7 C 1.38745 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99992 * 179.97438 * 7 2 1 9 9 O 1.34919 * 120.00307 * 359.97438 * 7 2 1 10 10 C 1.34310 * 117.00393 * 180.02562 * 9 7 2 11 11 O 1.21207 * 119.99958 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99993 * 179.97438 * 10 9 7 13 13 C 1.50699 * 109.47009 * 180.02562 * 12 10 9 14 14 C 1.38133 * 120.03523 * 265.00221 * 13 12 10 15 15 C 1.38265 * 120.07407 * 180.29677 * 14 13 12 16 16 C 1.38306 * 120.14784 * 359.44555 * 15 14 13 17 17 C 1.38089 * 120.07673 * 0.55309 * 16 15 14 18 18 C 1.38886 * 120.04213 * 85.01862 * 13 12 10 19 19 N 1.39676 * 120.07159 * 359.96227 * 18 13 12 20 20 H 0.97002 * 120.00114 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.47250 * 59.99911 * 12 10 9 22 22 H 1.09000 * 109.47074 * 299.99977 * 12 10 9 23 23 H 1.08002 * 119.95961 * 0.02562 * 14 13 12 24 24 H 1.08001 * 119.92315 * 179.69829 * 15 14 13 25 25 H 1.08003 * 119.96002 * 180.27453 * 16 15 14 26 26 H 1.07998 * 120.03790 * 179.70139 * 17 16 15 27 27 H 0.96994 * 120.00263 * 359.97438 * 19 18 13 28 28 H 0.97003 * 119.99650 * 180.02562 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.7083 1.3464 -0.0006 5 1 1.8896 2.3966 -1.2124 6 1 1.8897 2.3964 1.2125 7 6 2.0081 -1.2016 -0.0005 8 1 3.0881 -1.2015 -0.0010 9 8 1.3336 -2.3700 -0.0005 10 6 2.0651 -3.4965 -0.0005 11 8 3.2755 -3.4330 -0.0001 12 6 1.3809 -4.8392 0.0000 13 6 2.4189 -5.9318 0.0006 14 6 2.8195 -6.5054 -1.1905 15 6 3.7673 -7.5121 -1.1904 16 6 4.3256 -7.9404 0.0003 17 6 3.9296 -7.3713 1.1945 18 6 2.9734 -6.3635 1.1985 19 7 2.5708 -5.7854 2.4046 20 1 -0.4850 0.8401 0.0004 21 1 0.7578 -4.9299 -0.8896 22 1 0.7585 -4.9294 0.8903 23 1 2.3888 -6.1700 -2.1224 24 1 4.0752 -7.9622 -2.1226 25 1 5.0689 -8.7240 -0.0036 26 1 4.3625 -7.7096 2.1243 27 1 1.9036 -5.0814 2.4062 28 1 2.9591 -6.0875 3.2406 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041047915.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:57 Heat of formation + Delta-G solvation = -59.376157 kcal Electronic energy + Delta-G solvation = -14405.437762 eV Core-core repulsion = 11807.395153 eV Total energy + Delta-G solvation = -2598.042609 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.59799 -38.44827 -35.14284 -34.22233 -32.25571 -32.02487 -28.73041 -27.30279 -25.05781 -22.18252 -21.48841 -19.67214 -17.67078 -16.87940 -16.73475 -16.43694 -15.27069 -14.58903 -14.47357 -14.25252 -13.70476 -13.56926 -12.87103 -12.79080 -12.11356 -11.96771 -11.55140 -11.17618 -10.94606 -10.71845 -10.39321 -10.38281 -10.28493 -9.75946 -8.98660 -8.54968 -8.44564 -7.20423 -6.37997 -4.05664 1.70757 1.96085 3.11838 3.20617 3.28263 3.59265 3.93715 4.11427 4.23623 4.82626 5.10362 5.11343 5.20139 5.36468 5.59974 5.75803 5.87706 5.95135 6.20910 6.30288 6.56418 6.81696 6.86113 6.95154 7.20057 7.43630 7.76395 7.99298 8.01306 8.78450 9.11451 9.91656 10.80262 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.051578 B = 0.006495 C = 0.006430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.734536 B = 4309.736264 C = 4353.279448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.041 3.959 3 Si 0.941 3.059 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.380 4.380 8 H 0.094 0.906 9 O -0.220 6.220 10 C 0.396 3.604 11 O -0.543 6.543 12 C -0.061 4.061 13 C -0.135 4.135 14 C -0.059 4.059 15 C -0.184 4.184 16 C -0.077 4.077 17 C -0.204 4.204 18 C 0.235 3.765 19 N -0.874 5.874 20 H 0.268 0.732 21 H 0.100 0.900 22 H 0.091 0.909 23 H 0.119 0.881 24 H 0.114 0.886 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.399 0.601 28 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.036 -12.170 1.795 12.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.456 4.456 8 H 0.112 0.888 9 O -0.127 6.127 10 C 0.242 3.758 11 O -0.439 6.439 12 C -0.099 4.099 13 C -0.139 4.139 14 C -0.078 4.078 15 C -0.204 4.204 16 C -0.096 4.096 17 C -0.227 4.227 18 C 0.130 3.870 19 N -0.413 5.413 20 H 0.078 0.922 21 H 0.118 0.882 22 H 0.109 0.891 23 H 0.137 0.863 24 H 0.133 0.867 25 H 0.133 0.867 26 H 0.133 0.867 27 H 0.229 0.771 28 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 3.174 -11.988 1.769 12.526 hybrid contribution 0.336 1.048 0.332 1.149 sum 3.510 -10.940 2.101 11.680 Atomic orbital electron populations 1.69999 1.05946 1.27433 1.47149 1.25307 0.95793 0.98776 0.96391 0.85645 0.79485 0.80244 0.78077 1.19015 1.20200 1.20240 1.21247 0.92340 0.79943 1.52098 0.88791 1.83884 1.39417 1.13362 1.76084 1.23158 0.86866 0.86971 0.78832 1.90579 1.15586 1.87955 1.49785 1.19908 0.96628 0.88587 1.04746 1.18877 1.02518 1.00199 0.92346 1.20774 0.95778 0.94650 0.96605 1.20770 1.00980 1.00908 0.97707 1.20766 0.98170 0.98498 0.92179 1.20451 1.02464 1.01241 0.98507 1.17548 0.92061 0.91270 0.86147 1.42538 1.48916 1.44354 1.05490 0.92232 0.88162 0.89110 0.86311 0.86744 0.86680 0.86683 0.77108 0.77794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.61 13.67 55.48 0.76 -24.85 15 2 C 0.04 1.16 5.49 -17.53 -0.10 1.06 15 3 Si 0.94 21.59 29.55 -169.99 -5.02 16.57 15 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 15 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 15 6 H -0.28 -6.13 7.11 56.52 0.40 -5.72 15 7 C -0.38 -11.38 9.64 30.92 0.30 -11.08 15 8 H 0.09 2.86 6.86 -52.49 -0.36 2.50 15 9 O -0.22 -6.32 9.75 -20.69 -0.20 -6.52 15 10 C 0.40 9.84 7.90 36.01 0.28 10.12 15 11 O -0.54 -14.90 15.27 -19.05 -0.29 -15.19 15 12 C -0.06 -1.13 5.38 -29.03 -0.16 -1.28 15 13 C -0.13 -2.37 4.39 -104.42 -0.46 -2.83 15 14 C -0.06 -0.96 9.68 -39.61 -0.38 -1.35 15 15 C -0.18 -2.64 10.04 -39.55 -0.40 -3.04 15 16 C -0.08 -1.06 10.04 -39.61 -0.40 -1.46 15 17 C -0.20 -2.96 9.90 -39.38 -0.39 -3.35 15 18 C 0.24 3.84 6.73 -83.79 -0.56 3.28 15 19 N -0.87 -12.52 8.99 32.41 0.29 -12.23 15 20 H 0.27 7.23 8.31 -40.82 -0.34 6.89 15 21 H 0.10 1.68 8.05 -51.93 -0.42 1.26 15 22 H 0.09 1.49 6.82 -51.93 -0.35 1.14 15 23 H 0.12 1.75 8.06 -52.49 -0.42 1.33 15 24 H 0.11 1.36 8.06 -52.49 -0.42 0.93 15 25 H 0.12 1.24 8.06 -52.48 -0.42 0.81 15 26 H 0.12 1.38 8.06 -52.49 -0.42 0.96 15 27 H 0.40 5.96 6.94 -40.82 -0.28 5.68 15 28 H 0.39 4.49 8.84 -40.82 -0.36 4.13 15 LS Contribution 255.78 15.07 3.85 3.85 Total: -1.00 -34.29 255.78 -5.47 -39.76 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -2.60 Total: 8.53 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -2.26 Total: -9.92 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 1.05 Total: -37.08 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.49 Total: -21.72 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -34.29 -5.47 -39.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041047915.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.614 kcal (2) G-P(sol) polarization free energy of solvation -34.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds