Wall clock time and date at job start Mon Mar 30 2020 03:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31439 * 1 3 3 Si 1.86803 * 119.99911 * 2 1 4 4 H 1.48491 * 109.47073 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47430 * 300.00551 * 3 2 1 6 6 H 1.48501 * 109.47099 * 60.00239 * 3 2 1 7 7 C 1.38745 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99992 * 179.97438 * 7 2 1 9 9 O 1.34919 * 120.00307 * 359.97438 * 7 2 1 10 10 C 1.34310 * 117.00393 * 180.02562 * 9 7 2 11 11 O 1.21207 * 119.99958 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99993 * 179.97438 * 10 9 7 13 13 C 1.50699 * 109.47009 * 180.02562 * 12 10 9 14 14 C 1.38133 * 120.03523 * 265.00221 * 13 12 10 15 15 C 1.38265 * 120.07407 * 180.29677 * 14 13 12 16 16 C 1.38306 * 120.14784 * 359.44555 * 15 14 13 17 17 C 1.38089 * 120.07673 * 0.55309 * 16 15 14 18 18 C 1.38886 * 120.04213 * 85.01862 * 13 12 10 19 19 N 1.39676 * 120.07159 * 359.96227 * 18 13 12 20 20 H 0.97002 * 120.00114 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.47250 * 59.99911 * 12 10 9 22 22 H 1.09000 * 109.47074 * 299.99977 * 12 10 9 23 23 H 1.08002 * 119.95961 * 0.02562 * 14 13 12 24 24 H 1.08001 * 119.92315 * 179.69829 * 15 14 13 25 25 H 1.08003 * 119.96002 * 180.27453 * 16 15 14 26 26 H 1.07998 * 120.03790 * 179.70139 * 17 16 15 27 27 H 0.96994 * 120.00263 * 359.97438 * 19 18 13 28 28 H 0.97003 * 119.99650 * 180.02562 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.7083 1.3464 -0.0006 5 1 1.8896 2.3966 -1.2124 6 1 1.8897 2.3964 1.2125 7 6 2.0081 -1.2016 -0.0005 8 1 3.0881 -1.2015 -0.0010 9 8 1.3336 -2.3700 -0.0005 10 6 2.0651 -3.4965 -0.0005 11 8 3.2755 -3.4330 -0.0001 12 6 1.3809 -4.8392 0.0000 13 6 2.4189 -5.9318 0.0006 14 6 2.8195 -6.5054 -1.1905 15 6 3.7673 -7.5121 -1.1904 16 6 4.3256 -7.9404 0.0003 17 6 3.9296 -7.3713 1.1945 18 6 2.9734 -6.3635 1.1985 19 7 2.5708 -5.7854 2.4046 20 1 -0.4850 0.8401 0.0004 21 1 0.7578 -4.9299 -0.8896 22 1 0.7585 -4.9294 0.8903 23 1 2.3888 -6.1700 -2.1224 24 1 4.0752 -7.9622 -2.1226 25 1 5.0689 -8.7240 -0.0036 26 1 4.3625 -7.7096 2.1243 27 1 1.9036 -5.0814 2.4062 28 1 2.9591 -6.0875 3.2406 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041047915.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:57 Heat of formation + Delta-G solvation = -82.401238 kcal Electronic energy + Delta-G solvation = -14406.436205 eV Core-core repulsion = 11807.395153 eV Total energy + Delta-G solvation = -2599.041051 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.23719 -40.05346 -37.19393 -35.38317 -34.30305 -33.54432 -29.96241 -28.74120 -27.09522 -23.45267 -22.90440 -21.31580 -19.85149 -18.47112 -18.06181 -17.89194 -16.66667 -16.50922 -16.37829 -15.98987 -14.94093 -14.71462 -14.47295 -14.08930 -13.71836 -13.54010 -13.50740 -12.91924 -12.34830 -12.22064 -12.09997 -11.98657 -11.82123 -11.49548 -11.02050 -10.69350 -9.65974 -8.54336 -8.36032 -6.33231 0.51184 0.80036 1.30193 1.33538 1.51577 1.67020 2.12948 2.73636 2.97085 3.01730 3.26332 3.79800 3.97605 4.24570 4.37610 4.53394 4.65462 4.76828 4.82042 5.02998 5.15677 5.24430 5.45584 5.67484 5.78229 5.84445 6.08729 6.58867 6.71048 6.92095 6.95413 7.80662 8.67258 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.051578 B = 0.006495 C = 0.006430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.734536 B = 4309.736264 C = 4353.279448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.004 4.004 3 Si 1.015 2.985 4 H -0.267 1.267 5 H -0.260 1.260 6 H -0.259 1.259 7 C -0.419 4.419 8 H 0.077 0.923 9 O -0.248 6.248 10 C 0.398 3.602 11 O -0.572 6.572 12 C -0.049 4.049 13 C -0.168 4.168 14 C -0.076 4.076 15 C -0.189 4.189 16 C -0.074 4.074 17 C -0.210 4.210 18 C 0.218 3.782 19 N -0.872 5.872 20 H 0.278 0.722 21 H 0.117 0.883 22 H 0.110 0.890 23 H 0.124 0.876 24 H 0.140 0.860 25 H 0.150 0.850 26 H 0.140 0.860 27 H 0.394 0.606 28 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.883 -12.762 1.912 13.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.204 4.204 3 Si 0.834 3.166 4 H -0.192 1.192 5 H -0.184 1.184 6 H -0.183 1.183 7 C -0.495 4.495 8 H 0.095 0.905 9 O -0.157 6.157 10 C 0.246 3.754 11 O -0.469 6.469 12 C -0.087 4.087 13 C -0.173 4.173 14 C -0.095 4.095 15 C -0.209 4.209 16 C -0.092 4.092 17 C -0.233 4.233 18 C 0.112 3.888 19 N -0.411 5.411 20 H 0.088 0.912 21 H 0.135 0.865 22 H 0.128 0.872 23 H 0.142 0.858 24 H 0.158 0.842 25 H 0.168 0.832 26 H 0.158 0.842 27 H 0.223 0.777 28 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 4.014 -12.612 1.900 13.371 hybrid contribution 0.112 1.085 0.293 1.129 sum 4.126 -11.527 2.194 12.438 Atomic orbital electron populations 1.70075 1.07533 1.29209 1.47275 1.26480 0.96870 1.02199 0.94844 0.84602 0.77679 0.74991 0.79290 1.19159 1.18431 1.18329 1.21386 0.91964 0.81357 1.54753 0.90497 1.83910 1.40364 1.14183 1.77264 1.24403 0.86811 0.87925 0.76303 1.90537 1.17150 1.88503 1.50667 1.19972 0.97102 0.85147 1.06430 1.18948 1.03797 1.00874 0.93657 1.21032 0.96527 0.95430 0.96470 1.21130 1.00183 1.00260 0.99321 1.21235 0.97968 0.98514 0.91483 1.20838 1.01788 1.00533 1.00121 1.17841 0.92656 0.92049 0.86259 1.42532 1.48755 1.44044 1.05775 0.91249 0.86478 0.87171 0.85811 0.84203 0.83232 0.84235 0.77720 0.76286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.71 13.67 21.62 0.30 -53.41 15 2 C 0.00 -0.23 5.49 84.87 0.47 0.24 15 3 Si 1.02 44.10 29.55 68.60 2.03 46.12 15 4 H -0.27 -11.54 7.11 99.48 0.71 -10.84 15 5 H -0.26 -10.54 7.11 99.48 0.71 -9.83 15 6 H -0.26 -10.45 7.11 99.48 0.71 -9.74 15 7 C -0.42 -25.83 9.64 67.94 0.66 -25.18 15 8 H 0.08 4.87 6.86 -2.91 -0.02 4.85 15 9 O -0.25 -14.76 9.75 14.90 0.15 -14.62 15 10 C 0.40 20.28 7.90 71.24 0.56 20.85 15 11 O -0.57 -32.21 15.27 20.78 0.32 -31.89 15 12 C -0.05 -1.83 5.38 29.10 0.16 -1.67 15 13 C -0.17 -5.84 4.39 -19.73 -0.09 -5.93 15 14 C -0.08 -2.40 9.68 22.25 0.22 -2.18 15 15 C -0.19 -5.01 10.04 22.29 0.22 -4.79 15 16 C -0.07 -1.79 10.04 22.25 0.22 -1.57 15 17 C -0.21 -5.61 9.90 22.40 0.22 -5.39 15 18 C 0.22 6.90 6.73 38.21 0.26 7.16 15 19 N -0.87 -24.41 8.99 -51.37 -0.46 -24.87 15 20 H 0.28 14.94 8.31 -92.71 -0.77 14.17 15 21 H 0.12 3.92 8.05 -2.39 -0.02 3.90 15 22 H 0.11 3.62 6.82 -2.39 -0.02 3.61 15 23 H 0.12 3.60 8.06 -2.91 -0.02 3.58 15 24 H 0.14 2.90 8.06 -2.91 -0.02 2.88 15 25 H 0.15 2.56 8.06 -2.91 -0.02 2.54 15 26 H 0.14 2.93 8.06 -2.91 -0.02 2.91 15 27 H 0.39 11.78 6.94 -92.71 -0.64 11.13 15 28 H 0.41 8.84 8.84 -92.71 -0.82 8.02 15 Total: -1.00 -74.91 255.78 4.96 -69.95 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: -0.26 Total: 27.18 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: 2.90 Total: -18.46 kcal Atomic # 7 Polarization: -78.12 SS G_CDS: -0.17 Total: -78.28 kcal Atomic # 8 Polarization: -46.97 SS G_CDS: 0.46 Total: -46.51 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -74.91 4.96 -69.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041047915.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.447 kcal (2) G-P(sol) polarization free energy of solvation -74.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds