Wall clock time and date at job start Mon Mar 30 2020 03:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31443 * 1 3 3 Si 1.86796 * 119.99868 * 2 1 4 4 H 1.48503 * 109.47235 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47038 * 300.00176 * 3 2 1 6 6 H 1.48497 * 109.47266 * 60.00198 * 3 2 1 7 7 C 1.38756 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99561 * 179.97438 * 7 2 1 9 9 O 1.34913 * 119.99858 * 359.97438 * 7 2 1 10 10 C 1.34310 * 116.99791 * 179.97438 * 9 7 2 11 11 O 1.21213 * 119.99932 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00496 * 179.97438 * 10 9 7 13 13 C 1.50689 * 109.47698 * 179.97438 * 12 10 9 14 14 C 1.38293 * 119.92619 * 90.00181 * 13 12 10 15 15 C 1.38103 * 120.07544 * 180.02562 * 14 13 12 16 16 C 1.38914 * 119.92585 * 0.02562 * 15 14 13 17 17 N 1.39671 * 120.07130 * 179.97438 * 16 15 14 18 18 C 1.38912 * 119.84788 * 0.25342 * 16 15 14 19 19 C 1.38098 * 119.92495 * 359.48977 * 18 16 15 20 20 H 0.97001 * 120.00392 * 359.97438 * 1 2 3 21 21 H 1.09007 * 109.46897 * 59.99553 * 12 10 9 22 22 H 1.09003 * 109.46911 * 300.00868 * 12 10 9 23 23 H 1.08001 * 119.95818 * 0.04180 * 14 13 12 24 24 H 1.07999 * 120.03416 * 179.97438 * 15 14 13 25 25 H 0.97001 * 120.00529 * 0.02562 * 17 16 15 26 26 H 0.97005 * 119.99745 * 179.72366 * 17 16 15 27 27 H 1.08005 * 120.03088 * 179.72680 * 18 16 15 28 28 H 1.08005 * 119.96252 * 180.25688 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.7084 1.3464 -0.0006 5 1 1.8896 2.3964 -1.2125 6 1 1.8897 2.3964 1.2125 7 6 2.0082 -1.2017 -0.0005 8 1 3.0882 -1.2016 -0.0010 9 8 1.3336 -2.3700 -0.0005 10 6 2.0651 -3.4964 -0.0016 11 8 3.2755 -3.4330 -0.0020 12 6 1.3810 -4.8393 -0.0011 13 6 2.4188 -5.9318 -0.0031 14 6 2.8958 -6.4326 1.1945 15 6 3.8473 -7.4335 1.1962 16 6 4.3257 -7.9370 -0.0069 17 7 5.2884 -8.9489 -0.0087 18 6 3.8487 -7.4277 -1.2080 19 6 2.8933 -6.4305 -1.2025 20 1 -0.4851 0.8400 0.0004 21 1 0.7571 -4.9295 -0.8904 22 1 0.7591 -4.9299 0.8895 23 1 2.5235 -6.0405 2.1294 24 1 4.2196 -7.8238 2.1318 25 1 5.6235 -9.3012 0.8307 26 1 5.6188 -9.3025 -0.8494 27 1 4.2218 -7.8139 -2.1451 28 1 2.5189 -6.0370 -2.1361 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041047975.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:00 Heat of formation + Delta-G solvation = -60.810484 kcal Electronic energy + Delta-G solvation = -14090.479353 eV Core-core repulsion = 11492.374547 eV Total energy + Delta-G solvation = -2598.104806 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.42908 -38.50586 -35.38220 -34.36403 -32.05810 -30.73026 -30.60995 -26.56563 -24.82998 -22.57351 -21.44614 -19.68014 -17.61474 -16.93312 -16.75820 -16.36333 -15.13287 -14.76516 -14.40474 -14.17123 -13.77388 -13.36554 -13.10489 -12.92791 -12.18193 -11.74313 -11.56750 -11.14033 -11.07405 -10.65830 -10.36358 -10.25540 -10.24615 -9.70031 -8.87820 -8.62448 -8.49950 -7.27482 -6.32944 -4.00343 1.74513 1.85469 3.15718 3.23759 3.31599 3.66770 3.91976 3.98218 4.19565 4.90788 5.10552 5.20638 5.22745 5.29977 5.68114 5.73645 5.97208 6.01172 6.19016 6.33945 6.54381 6.62147 6.92963 7.07111 7.14147 7.48714 7.61654 7.79517 8.05078 8.84409 9.16472 9.98018 10.85536 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.062464 B = 0.005634 C = 0.005483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.152083 B = 4968.316096 C = 5105.877440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.040 3.960 3 Si 0.940 3.060 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.379 4.379 8 H 0.094 0.906 9 O -0.220 6.220 10 C 0.399 3.601 11 O -0.548 6.548 12 C -0.062 4.062 13 C -0.110 4.110 14 C -0.057 4.057 15 C -0.198 4.198 16 C 0.205 3.795 17 N -0.884 5.884 18 C -0.197 4.197 19 C -0.057 4.057 20 H 0.267 0.733 21 H 0.097 0.903 22 H 0.097 0.903 23 H 0.120 0.880 24 H 0.116 0.884 25 H 0.394 0.606 26 H 0.394 0.606 27 H 0.116 0.884 28 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.931 -14.518 -0.010 15.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.455 4.455 8 H 0.112 0.888 9 O -0.128 6.128 10 C 0.245 3.755 11 O -0.444 6.444 12 C -0.099 4.099 13 C -0.112 4.112 14 C -0.075 4.075 15 C -0.220 4.220 16 C 0.102 3.898 17 N -0.424 5.424 18 C -0.220 4.220 19 C -0.075 4.075 20 H 0.077 0.923 21 H 0.115 0.885 22 H 0.115 0.885 23 H 0.138 0.862 24 H 0.134 0.866 25 H 0.222 0.778 26 H 0.222 0.778 27 H 0.134 0.866 28 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.029 -14.284 -0.010 15.143 hybrid contribution 0.722 0.586 -0.001 0.930 sum 5.751 -13.698 -0.011 14.856 Atomic orbital electron populations 1.70003 1.05941 1.27365 1.47320 1.25308 0.95789 0.98764 0.96474 0.85647 0.79478 0.80296 0.78032 1.19024 1.20258 1.20253 1.21251 0.92341 0.80002 1.51952 0.88791 1.83885 1.39415 1.13369 1.76096 1.23189 0.86813 0.87036 0.78428 1.90567 1.15707 1.88052 1.50115 1.20005 0.96608 0.88391 1.04940 1.19178 1.00519 0.98201 0.93302 1.20745 0.94907 0.94351 0.97524 1.20456 1.03143 1.02534 0.95874 1.17734 0.89243 0.88860 0.93968 1.42389 1.46971 1.42666 1.10351 1.20455 1.03084 1.02557 0.95898 1.20742 0.94887 0.94396 0.97506 0.92278 0.88496 0.88490 0.86240 0.86637 0.77817 0.77818 0.86636 0.86241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.01 13.67 55.48 0.76 -25.25 15 2 C 0.04 1.15 5.49 -17.53 -0.10 1.06 15 3 Si 0.94 21.86 29.55 -169.99 -5.02 16.83 15 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 15 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 7 C -0.38 -11.53 9.64 30.92 0.30 -11.24 15 8 H 0.09 2.90 6.86 -52.49 -0.36 2.54 15 9 O -0.22 -6.47 9.75 -20.68 -0.20 -6.67 15 10 C 0.40 10.15 7.90 36.01 0.28 10.43 15 11 O -0.55 -15.30 15.27 -19.05 -0.29 -15.59 15 12 C -0.06 -1.16 5.94 -29.04 -0.17 -1.33 15 13 C -0.11 -1.93 4.38 -104.59 -0.46 -2.39 15 14 C -0.06 -0.92 9.69 -39.61 -0.38 -1.30 15 15 C -0.20 -2.82 9.90 -39.38 -0.39 -3.21 15 16 C 0.20 2.78 6.75 -83.79 -0.57 2.21 15 17 N -0.88 -8.46 9.09 32.41 0.29 -8.17 15 18 C -0.20 -2.82 9.90 -39.38 -0.39 -3.21 15 19 C -0.06 -0.92 9.69 -39.62 -0.38 -1.30 15 20 H 0.27 7.31 8.31 -40.82 -0.34 6.97 15 21 H 0.10 1.62 8.08 -51.92 -0.42 1.20 15 22 H 0.10 1.62 8.09 -51.93 -0.42 1.20 15 23 H 0.12 1.79 8.06 -52.49 -0.42 1.36 15 24 H 0.12 1.37 8.06 -52.49 -0.42 0.95 15 25 H 0.39 3.01 8.84 -40.82 -0.36 2.65 15 26 H 0.39 3.01 8.84 -40.82 -0.36 2.65 15 27 H 0.12 1.37 8.06 -52.48 -0.42 0.95 15 28 H 0.12 1.79 8.06 -52.48 -0.42 1.37 15 LS Contribution 259.17 15.07 3.91 3.91 Total: -1.00 -35.16 259.17 -5.56 -40.72 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -2.75 Total: 4.51 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -2.26 Total: -10.28 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: 1.05 Total: -33.42 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.49 Total: -22.26 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -35.16 -5.56 -40.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041047975.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.093 kcal (2) G-P(sol) polarization free energy of solvation -35.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds