Wall clock time and date at job start Mon Mar 30 2020 03:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31443 * 1 3 3 Si 1.86796 * 119.99868 * 2 1 4 4 H 1.48503 * 109.47235 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47038 * 300.00176 * 3 2 1 6 6 H 1.48497 * 109.47266 * 60.00198 * 3 2 1 7 7 C 1.38756 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99561 * 179.97438 * 7 2 1 9 9 O 1.34913 * 119.99858 * 359.97438 * 7 2 1 10 10 C 1.34310 * 116.99791 * 179.97438 * 9 7 2 11 11 O 1.21213 * 119.99932 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00496 * 179.97438 * 10 9 7 13 13 C 1.50689 * 109.47698 * 179.97438 * 12 10 9 14 14 C 1.38293 * 119.92619 * 90.00181 * 13 12 10 15 15 C 1.38103 * 120.07544 * 180.02562 * 14 13 12 16 16 C 1.38914 * 119.92585 * 0.02562 * 15 14 13 17 17 N 1.39671 * 120.07130 * 179.97438 * 16 15 14 18 18 C 1.38912 * 119.84788 * 0.25342 * 16 15 14 19 19 C 1.38098 * 119.92495 * 359.48977 * 18 16 15 20 20 H 0.97001 * 120.00392 * 359.97438 * 1 2 3 21 21 H 1.09007 * 109.46897 * 59.99553 * 12 10 9 22 22 H 1.09003 * 109.46911 * 300.00868 * 12 10 9 23 23 H 1.08001 * 119.95818 * 0.04180 * 14 13 12 24 24 H 1.07999 * 120.03416 * 179.97438 * 15 14 13 25 25 H 0.97001 * 120.00529 * 0.02562 * 17 16 15 26 26 H 0.97005 * 119.99745 * 179.72366 * 17 16 15 27 27 H 1.08005 * 120.03088 * 179.72680 * 18 16 15 28 28 H 1.08005 * 119.96252 * 180.25688 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.7084 1.3464 -0.0006 5 1 1.8896 2.3964 -1.2125 6 1 1.8897 2.3964 1.2125 7 6 2.0082 -1.2017 -0.0005 8 1 3.0882 -1.2016 -0.0010 9 8 1.3336 -2.3700 -0.0005 10 6 2.0651 -3.4964 -0.0016 11 8 3.2755 -3.4330 -0.0020 12 6 1.3810 -4.8393 -0.0011 13 6 2.4188 -5.9318 -0.0031 14 6 2.8958 -6.4326 1.1945 15 6 3.8473 -7.4335 1.1962 16 6 4.3257 -7.9370 -0.0069 17 7 5.2884 -8.9489 -0.0087 18 6 3.8487 -7.4277 -1.2080 19 6 2.8933 -6.4305 -1.2025 20 1 -0.4851 0.8400 0.0004 21 1 0.7571 -4.9295 -0.8904 22 1 0.7591 -4.9299 0.8895 23 1 2.5235 -6.0405 2.1294 24 1 4.2196 -7.8238 2.1318 25 1 5.6235 -9.3012 0.8307 26 1 5.6188 -9.3025 -0.8494 27 1 4.2218 -7.8139 -2.1451 28 1 2.5189 -6.0370 -2.1361 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041047975.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:00 Heat of formation + Delta-G solvation = -84.878416 kcal Electronic energy + Delta-G solvation = -14091.523017 eV Core-core repulsion = 11492.374547 eV Total energy + Delta-G solvation = -2599.148470 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.11086 -40.04849 -37.28967 -35.68837 -34.27381 -32.06400 -31.74851 -28.17443 -26.72679 -23.71305 -22.92037 -21.35167 -19.83215 -18.43293 -17.96160 -17.73934 -16.60945 -16.60770 -16.36628 -15.87891 -15.07171 -14.58467 -14.35373 -14.23067 -13.88542 -13.56910 -13.38294 -12.80872 -12.45264 -12.29183 -12.13891 -11.94156 -11.78584 -11.40185 -10.92203 -10.67622 -9.78232 -8.52872 -8.30789 -6.31371 0.59070 0.64883 1.32219 1.34530 1.53052 1.70398 2.15284 2.75156 2.98962 3.07842 3.25948 3.90831 3.97777 4.18964 4.39209 4.54777 4.67730 4.83123 4.83837 5.02397 5.19500 5.21812 5.42850 5.53990 5.85131 5.86523 6.01974 6.65096 6.73616 6.93794 7.07718 7.83421 8.69455 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.062464 B = 0.005634 C = 0.005483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.152083 B = 4968.316096 C = 5105.877440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.006 4.006 3 Si 1.016 2.984 4 H -0.267 1.267 5 H -0.259 1.259 6 H -0.259 1.259 7 C -0.420 4.420 8 H 0.078 0.922 9 O -0.250 6.250 10 C 0.398 3.602 11 O -0.577 6.577 12 C -0.050 4.050 13 C -0.143 4.143 14 C -0.071 4.071 15 C -0.206 4.206 16 C 0.211 3.789 17 N -0.866 5.866 18 C -0.206 4.206 19 C -0.071 4.071 20 H 0.278 0.722 21 H 0.116 0.884 22 H 0.116 0.884 23 H 0.123 0.877 24 H 0.140 0.860 25 H 0.407 0.593 26 H 0.407 0.593 27 H 0.140 0.860 28 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.913 -15.232 -0.010 16.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.206 4.206 3 Si 0.835 3.165 4 H -0.191 1.191 5 H -0.184 1.184 6 H -0.183 1.183 7 C -0.495 4.495 8 H 0.096 0.904 9 O -0.158 6.158 10 C 0.246 3.754 11 O -0.474 6.474 12 C -0.087 4.087 13 C -0.145 4.145 14 C -0.089 4.089 15 C -0.228 4.228 16 C 0.105 3.895 17 N -0.407 5.407 18 C -0.228 4.228 19 C -0.089 4.089 20 H 0.087 0.913 21 H 0.134 0.866 22 H 0.134 0.866 23 H 0.141 0.859 24 H 0.158 0.842 25 H 0.236 0.764 26 H 0.236 0.764 27 H 0.158 0.842 28 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.023 -15.056 -0.010 16.216 hybrid contribution 0.486 0.628 -0.001 0.794 sum 6.509 -14.428 -0.011 15.828 Atomic orbital electron populations 1.70082 1.07579 1.29206 1.47387 1.26518 0.96897 1.02280 0.94860 0.84588 0.77687 0.74885 0.79296 1.19083 1.18354 1.18340 1.21416 0.92018 0.81417 1.54693 0.90429 1.83912 1.40415 1.14239 1.77275 1.24546 0.86827 0.88107 0.75970 1.90523 1.17274 1.88605 1.51008 1.20095 0.97102 0.84789 1.06706 1.19181 1.01877 0.98955 0.94511 1.20938 0.95583 0.95107 0.97301 1.20733 1.02647 1.02098 0.97360 1.17875 0.89153 0.88943 0.93488 1.42360 1.45361 1.41081 1.11881 1.20732 1.02590 1.02128 0.97388 1.20934 0.95566 0.95148 0.97280 0.91254 0.86582 0.86574 0.85905 0.84217 0.76367 0.76368 0.84219 0.85909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.66 13.67 21.63 0.30 -54.36 15 2 C -0.01 -0.34 5.49 84.87 0.47 0.12 15 3 Si 1.02 44.68 29.55 68.60 2.03 46.71 15 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 15 5 H -0.26 -10.60 7.11 99.48 0.71 -9.89 15 6 H -0.26 -10.59 7.11 99.48 0.71 -9.88 15 7 C -0.42 -26.35 9.64 67.94 0.66 -25.69 15 8 H 0.08 4.98 6.86 -2.91 -0.02 4.96 15 9 O -0.25 -15.19 9.75 14.95 0.15 -15.05 15 10 C 0.40 20.81 7.90 71.24 0.56 21.37 15 11 O -0.58 -33.20 15.27 20.77 0.32 -32.89 15 12 C -0.05 -1.88 5.94 29.10 0.17 -1.71 15 13 C -0.14 -5.00 4.38 -19.84 -0.09 -5.09 15 14 C -0.07 -2.25 9.69 22.25 0.22 -2.03 15 15 C -0.21 -5.50 9.90 22.40 0.22 -5.28 15 16 C 0.21 5.20 6.75 38.22 0.26 5.46 15 17 N -0.87 -13.71 9.09 -51.37 -0.47 -14.18 15 18 C -0.21 -5.51 9.90 22.40 0.22 -5.28 15 19 C -0.07 -2.25 9.69 22.25 0.22 -2.03 15 20 H 0.28 15.15 8.31 -92.71 -0.77 14.38 15 21 H 0.12 3.89 8.08 -2.38 -0.02 3.87 15 22 H 0.12 3.89 8.09 -2.39 -0.02 3.87 15 23 H 0.12 3.66 8.06 -2.91 -0.02 3.64 15 24 H 0.14 2.94 8.06 -2.91 -0.02 2.92 15 25 H 0.41 4.77 8.84 -92.71 -0.82 3.95 15 26 H 0.41 4.77 8.84 -92.70 -0.82 3.95 15 27 H 0.14 2.94 8.06 -2.91 -0.02 2.92 15 28 H 0.12 3.66 8.06 -2.91 -0.02 3.64 15 Total: -1.00 -77.28 259.17 4.78 -72.50 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -0.44 Total: 17.42 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: 2.90 Total: -20.15 kcal Atomic # 7 Polarization: -68.37 SS G_CDS: -0.17 Total: -68.54 kcal Atomic # 8 Polarization: -48.40 SS G_CDS: 0.46 Total: -47.93 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -77.28 4.78 -72.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041047975.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.378 kcal (2) G-P(sol) polarization free energy of solvation -77.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds