Wall clock time and date at job start Mon Mar 30 2020 03:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38257 * 119.99919 * 2 1 4 4 C 1.50689 * 120.00038 * 0.02562 * 3 2 1 5 5 C 1.50701 * 109.47406 * 84.72571 * 4 3 2 6 6 H 1.07998 * 119.99897 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00359 * 179.72209 * 5 4 3 8 8 N 1.31515 * 119.99983 * 0.27787 * 7 5 4 9 9 Si 1.86797 * 120.00417 * 180.27245 * 7 5 4 10 10 H 1.48501 * 109.47139 * 90.00073 * 9 7 5 11 11 H 1.48496 * 109.47528 * 210.00491 * 9 7 5 12 12 H 1.48505 * 109.46986 * 330.00924 * 9 7 5 13 13 C 1.38219 * 119.99609 * 179.72826 * 3 2 1 14 14 C 1.38249 * 120.00400 * 0.27747 * 13 3 2 15 15 C 1.38223 * 120.00012 * 359.97438 * 14 13 3 16 16 C 1.38217 * 119.99930 * 180.19228 * 2 1 3 17 17 N 1.48019 * 120.00371 * 0.04403 * 16 2 1 18 18 O 1.21792 * 120.00088 * 186.67855 * 17 16 2 19 19 O 1.21795 * 119.99687 * 6.67529 * 17 16 2 20 20 H 1.08999 * 109.47245 * 96.79257 * 1 2 3 21 21 H 1.09001 * 109.47100 * 216.78849 * 1 2 3 22 22 H 1.08999 * 109.47214 * 336.79116 * 1 2 3 23 23 H 1.08999 * 109.47461 * 324.72270 * 4 3 2 24 24 H 1.09000 * 109.47480 * 204.72415 * 4 3 2 25 25 H 0.96995 * 120.00236 * 179.97438 * 8 7 5 26 26 H 1.08001 * 119.99555 * 180.25781 * 13 3 2 27 27 H 1.08001 * 120.00522 * 179.97438 * 14 13 3 28 28 H 1.08001 * 119.99827 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 1.4448 2.5024 0.0006 5 6 1.0810 2.8718 1.4156 6 1 1.3672 2.2264 2.2328 7 6 0.3883 4.0370 1.6675 8 7 0.0402 4.8233 0.6725 9 14 -0.0560 4.4988 3.4222 10 1 1.0366 5.3139 4.0113 11 1 -1.3158 5.2848 3.4234 12 1 -0.2417 3.2646 4.2269 13 6 3.5804 1.1973 0.0057 14 6 4.2717 0.0000 0.0056 15 6 3.5806 -1.1970 0.0003 16 6 2.1980 -1.1970 -0.0040 17 7 1.4580 -2.4789 -0.0093 18 8 2.0607 -3.5305 0.1098 19 8 0.2463 -2.4820 -0.1327 20 1 -0.3634 -0.1215 -1.0204 21 1 -0.3633 -0.8230 0.6154 22 1 -0.3633 0.9445 0.4050 23 1 0.5363 2.3977 -0.5926 24 1 2.0713 3.2839 -0.4293 25 1 -0.4475 5.6428 0.8497 26 1 4.1204 2.1326 0.0099 27 1 5.3517 0.0000 0.0096 28 1 4.1207 -2.1323 -0.0002 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042406782.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:44 Heat of formation + Delta-G solvation = 6.577128 kcal Electronic energy + Delta-G solvation = -14605.460655 eV Core-core repulsion = 12010.277995 eV Total energy + Delta-G solvation = -2595.182660 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.86609 -39.22768 -36.30404 -33.97909 -32.51872 -31.81903 -28.13056 -26.92574 -25.45209 -23.51375 -21.75305 -20.51933 -18.24961 -18.14000 -17.23700 -16.52185 -15.74628 -15.34162 -14.72948 -13.66080 -13.48328 -12.79001 -12.36561 -12.26713 -11.98763 -11.77873 -11.58422 -11.26084 -11.03067 -10.83566 -10.75398 -10.54789 -10.18491 -9.84577 -9.69759 -8.99988 -8.60727 -8.28762 -6.23343 -4.29255 0.29866 1.44606 1.81785 1.84668 3.19648 3.27309 3.30649 3.76785 4.30045 4.81618 4.84991 5.11733 5.24306 5.35766 5.41876 5.62518 5.93731 6.16206 6.18481 6.29704 6.46368 6.58058 6.72698 6.80309 7.06752 7.30334 7.42756 7.70905 8.04684 8.06113 8.75182 9.36511 10.86205 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.035257 B = 0.008086 C = 0.007339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.973234 B = 3461.802548 C = 3814.548425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.014 4.014 3 C -0.039 4.039 4 C 0.049 3.951 5 C -0.520 4.520 6 H 0.057 0.943 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.896 3.104 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.272 1.272 13 C -0.072 4.072 14 C -0.128 4.128 15 C -0.084 4.084 16 C -0.053 4.053 17 N 0.039 4.961 18 O -0.191 6.191 19 O -0.163 6.163 20 H 0.077 0.923 21 H 0.085 0.915 22 H 0.100 0.900 23 H 0.040 0.960 24 H 0.035 0.965 25 H 0.265 0.735 26 H 0.138 0.862 27 H 0.137 0.863 28 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.551 -7.044 -1.766 9.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.015 4.015 3 C -0.040 4.040 4 C 0.012 3.988 5 C -0.558 4.558 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.527 5.527 9 Si 0.723 3.277 10 H -0.205 1.205 11 H -0.209 1.209 12 H -0.197 1.197 13 C -0.090 4.090 14 C -0.147 4.147 15 C -0.103 4.103 16 C -0.137 4.137 17 N 0.552 4.448 18 O -0.400 6.400 19 O -0.378 6.378 20 H 0.095 0.905 21 H 0.104 0.896 22 H 0.119 0.881 23 H 0.059 0.941 24 H 0.053 0.947 25 H 0.075 0.925 26 H 0.156 0.844 27 H 0.154 0.846 28 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.813 -6.308 -1.804 8.766 hybrid contribution -0.292 -0.031 0.964 1.007 sum 5.521 -6.339 -0.840 8.448 Atomic orbital electron populations 1.21339 0.88800 1.05801 1.03185 1.19867 0.98308 0.89728 0.93600 1.20754 0.93609 0.96431 0.93208 1.18449 0.95344 0.86552 0.98461 1.20945 1.36863 1.06615 0.91405 0.92444 1.24979 0.95411 0.96084 0.97420 1.69934 1.38735 1.12996 1.31003 0.86516 0.78068 0.78713 0.84364 1.20480 1.20944 1.19705 1.21596 0.94318 0.98479 0.94646 1.21071 1.00213 0.91198 1.02180 1.20765 0.90829 1.00199 0.98510 1.21004 0.92352 0.82662 1.17633 1.43674 1.01068 1.02941 0.97099 1.94464 1.70202 1.20760 1.54580 1.94461 0.96607 1.93935 1.52803 0.90482 0.89633 0.88130 0.94148 0.94655 0.92526 0.84432 0.84562 0.84121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 8.06 36.00 0.29 -2.22 15 2 C -0.01 -0.26 5.88 -104.62 -0.62 -0.87 15 3 C -0.04 -0.76 5.07 -104.63 -0.53 -1.29 15 4 C 0.05 1.12 4.41 -29.04 -0.13 0.99 15 5 C -0.52 -13.32 8.37 -34.44 -0.29 -13.61 15 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 15 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 8 N -0.89 -24.49 13.29 55.43 0.74 -23.75 15 9 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 15 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 11 H -0.28 -6.43 7.11 56.52 0.40 -6.02 15 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 15 13 C -0.07 -1.18 9.68 -39.58 -0.38 -1.56 15 14 C -0.13 -1.77 10.05 -39.58 -0.40 -2.17 15 15 C -0.08 -1.27 9.56 -39.58 -0.38 -1.65 15 16 C -0.05 -0.94 6.83 -79.95 -0.55 -1.49 15 17 N 0.04 0.71 4.45 33.96 0.15 0.87 15 18 O -0.19 -3.48 18.47 -29.46 -0.54 -4.02 15 19 O -0.16 -3.07 15.37 -29.46 -0.45 -3.52 15 20 H 0.08 1.32 8.14 -51.93 -0.42 0.90 15 21 H 0.09 1.55 5.89 -51.93 -0.31 1.25 15 22 H 0.10 2.05 5.85 -51.93 -0.30 1.75 15 23 H 0.04 0.98 6.88 -51.93 -0.36 0.62 15 24 H 0.04 0.84 8.05 -51.93 -0.42 0.43 15 25 H 0.27 6.94 8.31 -40.82 -0.34 6.60 15 26 H 0.14 2.03 8.06 -52.49 -0.42 1.61 15 27 H 0.14 1.39 8.06 -52.49 -0.42 0.97 15 28 H 0.14 1.83 7.63 -52.49 -0.40 1.43 15 LS Contribution 250.39 15.07 3.77 3.77 Total: -1.00 -27.60 250.39 -7.03 -34.63 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: -2.59 Total: -1.06 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: -3.07 Total: -22.29 kcal Atomic # 7 Polarization: -23.78 SS G_CDS: 0.89 Total: -22.89 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -1.00 Total: -7.54 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -27.60 -7.03 -34.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042406782.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.207 kcal (2) G-P(sol) polarization free energy of solvation -27.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds