Wall clock time and date at job start Mon Mar 30 2020 03:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38257 * 119.99919 * 2 1 4 4 C 1.50689 * 120.00038 * 0.02562 * 3 2 1 5 5 C 1.50701 * 109.47406 * 84.72571 * 4 3 2 6 6 H 1.07998 * 119.99897 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00359 * 179.72209 * 5 4 3 8 8 N 1.31515 * 119.99983 * 0.27787 * 7 5 4 9 9 Si 1.86797 * 120.00417 * 180.27245 * 7 5 4 10 10 H 1.48501 * 109.47139 * 90.00073 * 9 7 5 11 11 H 1.48496 * 109.47528 * 210.00491 * 9 7 5 12 12 H 1.48505 * 109.46986 * 330.00924 * 9 7 5 13 13 C 1.38219 * 119.99609 * 179.72826 * 3 2 1 14 14 C 1.38249 * 120.00400 * 0.27747 * 13 3 2 15 15 C 1.38223 * 120.00012 * 359.97438 * 14 13 3 16 16 C 1.38217 * 119.99930 * 180.19228 * 2 1 3 17 17 N 1.48019 * 120.00371 * 0.04403 * 16 2 1 18 18 O 1.21792 * 120.00088 * 186.67855 * 17 16 2 19 19 O 1.21795 * 119.99687 * 6.67529 * 17 16 2 20 20 H 1.08999 * 109.47245 * 96.79257 * 1 2 3 21 21 H 1.09001 * 109.47100 * 216.78849 * 1 2 3 22 22 H 1.08999 * 109.47214 * 336.79116 * 1 2 3 23 23 H 1.08999 * 109.47461 * 324.72270 * 4 3 2 24 24 H 1.09000 * 109.47480 * 204.72415 * 4 3 2 25 25 H 0.96995 * 120.00236 * 179.97438 * 8 7 5 26 26 H 1.08001 * 119.99555 * 180.25781 * 13 3 2 27 27 H 1.08001 * 120.00522 * 179.97438 * 14 13 3 28 28 H 1.08001 * 119.99827 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 1.4448 2.5024 0.0006 5 6 1.0810 2.8718 1.4156 6 1 1.3672 2.2264 2.2328 7 6 0.3883 4.0370 1.6675 8 7 0.0402 4.8233 0.6725 9 14 -0.0560 4.4988 3.4222 10 1 1.0366 5.3139 4.0113 11 1 -1.3158 5.2848 3.4234 12 1 -0.2417 3.2646 4.2269 13 6 3.5804 1.1973 0.0057 14 6 4.2717 0.0000 0.0056 15 6 3.5806 -1.1970 0.0003 16 6 2.1980 -1.1970 -0.0040 17 7 1.4580 -2.4789 -0.0093 18 8 2.0607 -3.5305 0.1098 19 8 0.2463 -2.4820 -0.1327 20 1 -0.3634 -0.1215 -1.0204 21 1 -0.3633 -0.8230 0.6154 22 1 -0.3633 0.9445 0.4050 23 1 0.5363 2.3977 -0.5926 24 1 2.0713 3.2839 -0.4293 25 1 -0.4475 5.6428 0.8497 26 1 4.1204 2.1326 0.0099 27 1 5.3517 0.0000 0.0096 28 1 4.1207 -2.1323 -0.0002 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042406782.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:43 Heat of formation + Delta-G solvation = -7.213284 kcal Electronic energy + Delta-G solvation = -14606.058652 eV Core-core repulsion = 12010.277995 eV Total energy + Delta-G solvation = -2595.780657 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.27912 -40.59779 -37.73033 -35.72241 -33.97698 -33.43084 -29.78814 -28.44160 -26.85799 -25.32479 -23.14082 -21.95675 -19.65438 -19.56032 -18.68304 -18.50816 -17.01639 -16.74207 -16.58159 -15.04534 -14.96014 -14.33624 -14.08203 -13.78713 -13.45894 -13.27039 -13.11006 -12.92222 -12.66708 -12.49590 -12.28172 -12.17280 -11.72657 -11.65343 -11.40984 -10.62351 -10.33122 -9.73511 -8.24187 -6.36002 -1.08959 0.15212 0.43419 0.46828 1.38778 1.41097 1.50565 2.33715 2.50029 3.08961 3.52671 3.57025 3.94322 4.07401 4.13062 4.32073 4.59201 4.68538 4.82011 4.99095 5.04233 5.12746 5.24085 5.32134 5.36497 5.69392 5.71963 5.72953 6.10173 6.62391 6.75199 7.33010 8.85288 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.035257 B = 0.008086 C = 0.007339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.973234 B = 3461.802548 C = 3814.548425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.032 4.032 3 C -0.067 4.067 4 C 0.058 3.942 5 C -0.526 4.526 6 H 0.052 0.948 7 C 0.015 3.985 8 N -0.923 5.923 9 Si 0.956 3.044 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.271 1.271 13 C -0.067 4.067 14 C -0.106 4.106 15 C -0.070 4.070 16 C -0.067 4.067 17 N 0.038 4.962 18 O -0.174 6.174 19 O -0.192 6.192 20 H 0.082 0.918 21 H 0.086 0.914 22 H 0.073 0.927 23 H 0.016 0.984 24 H 0.020 0.980 25 H 0.266 0.734 26 H 0.153 0.847 27 H 0.188 0.812 28 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.835 -8.075 -1.101 11.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.033 4.033 3 C -0.068 4.068 4 C 0.021 3.979 5 C -0.564 4.564 6 H 0.070 0.930 7 C -0.185 4.185 8 N -0.563 5.563 9 Si 0.781 3.219 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.195 1.195 13 C -0.085 4.085 14 C -0.124 4.124 15 C -0.089 4.089 16 C -0.150 4.150 17 N 0.550 4.450 18 O -0.389 6.389 19 O -0.400 6.400 20 H 0.101 0.899 21 H 0.105 0.895 22 H 0.092 0.908 23 H 0.035 0.965 24 H 0.038 0.962 25 H 0.075 0.925 26 H 0.171 0.829 27 H 0.205 0.795 28 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 8.044 -7.324 -1.145 10.939 hybrid contribution -0.878 0.209 0.723 1.157 sum 7.166 -7.114 -0.422 10.107 Atomic orbital electron populations 1.21200 0.89572 1.04147 1.03412 1.19796 0.98126 0.90413 0.94986 1.20433 0.95066 0.94736 0.96590 1.18148 0.94583 0.88389 0.96738 1.21226 1.36302 1.06316 0.92568 0.92979 1.25747 0.95503 0.96227 1.00991 1.70038 1.39810 1.13534 1.32896 0.85577 0.77927 0.78362 0.80019 1.19586 1.20752 1.19522 1.21851 0.92929 1.00571 0.93182 1.21553 1.02410 0.89212 0.99189 1.21270 0.89533 1.02109 0.95970 1.21159 0.93406 0.81728 1.18744 1.43808 1.01077 1.03227 0.96931 1.94434 1.70021 1.20972 1.53463 1.94472 0.97020 1.94092 1.54420 0.89911 0.89539 0.90831 0.96539 0.96208 0.92473 0.82942 0.79486 0.81104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.91 8.06 71.24 0.57 -4.34 15 2 C -0.03 -1.20 5.88 -19.87 -0.12 -1.32 15 3 C -0.07 -2.61 5.07 -19.87 -0.10 -2.71 15 4 C 0.06 2.78 4.41 29.10 0.13 2.90 15 5 C -0.53 -27.49 8.37 25.60 0.21 -27.27 15 6 H 0.05 2.71 7.74 -2.91 -0.02 2.69 15 7 C 0.01 0.78 5.46 84.65 0.46 1.24 15 8 N -0.92 -52.12 13.29 21.45 0.28 -51.83 15 9 Si 0.96 42.10 29.54 68.60 2.03 44.12 15 10 H -0.27 -11.48 7.11 99.48 0.71 -10.77 15 11 H -0.28 -12.25 7.11 99.48 0.71 -11.54 15 12 H -0.27 -11.72 7.11 99.48 0.71 -11.01 15 13 C -0.07 -2.02 9.68 22.27 0.22 -1.80 15 14 C -0.11 -2.40 10.05 22.27 0.22 -2.18 15 15 C -0.07 -1.82 9.56 22.27 0.21 -1.60 15 16 C -0.07 -2.25 6.83 36.38 0.25 -2.00 15 17 N 0.04 1.34 4.45 -46.46 -0.21 1.13 15 18 O -0.17 -5.92 18.47 18.90 0.35 -5.57 15 19 O -0.19 -7.21 15.37 18.89 0.29 -6.92 15 20 H 0.08 2.98 8.14 -2.39 -0.02 2.96 15 21 H 0.09 3.26 5.89 -2.39 -0.01 3.24 15 22 H 0.07 3.19 5.85 -2.39 -0.01 3.18 15 23 H 0.02 0.84 6.88 -2.39 -0.02 0.83 15 24 H 0.02 0.98 8.05 -2.39 -0.02 0.96 15 25 H 0.27 14.22 8.31 -92.71 -0.77 13.45 15 26 H 0.15 4.08 8.06 -2.91 -0.02 4.06 15 27 H 0.19 2.46 8.06 -2.91 -0.02 2.44 15 28 H 0.17 3.46 7.63 -2.91 -0.02 3.44 15 Total: -1.00 -60.20 250.39 5.98 -54.22 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: 1.18 Total: 3.92 kcal Atomic # 6 Polarization: -41.14 SS G_CDS: 2.06 Total: -39.08 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: 0.08 Total: -50.70 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.64 Total: -12.48 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Total: -60.20 5.98 -54.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042406782.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.009 kcal (2) G-P(sol) polarization free energy of solvation -60.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds