Wall clock time and date at job start Mon Mar 30 2020 03:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34674 * 117.00192 * 2 1 4 4 O 1.21435 * 120.00008 * 0.02562 * 3 2 1 5 5 C 1.48030 * 119.99970 * 180.02562 * 3 2 1 6 6 C 1.40186 * 120.84290 * 179.97438 * 5 3 2 7 7 C 1.38639 * 119.39791 * 180.02562 * 6 5 3 8 8 C 1.50704 * 119.42393 * 180.02562 * 7 6 5 9 9 N 1.31393 * 121.16149 * 359.73775 * 7 6 5 10 10 C 1.33562 * 121.84042 * 0.52711 * 9 7 6 11 11 C 1.41385 * 119.76369 * 179.75070 * 10 9 7 12 12 H 1.08002 * 120.00221 * 179.73285 * 11 10 9 13 13 C 1.40073 * 120.00014 * 359.45084 * 11 10 9 14 14 N 1.30714 * 119.99669 * 0.27886 * 13 11 10 15 15 Si 1.86794 * 119.99830 * 180.27333 * 13 11 10 16 16 H 1.48511 * 109.47064 * 90.00695 * 15 13 11 17 17 H 1.48501 * 109.47085 * 210.00274 * 15 13 11 18 18 H 1.48498 * 109.47634 * 330.00510 * 15 13 11 19 19 C 1.39377 * 120.84306 * 359.97438 * 5 3 2 20 20 H 1.08995 * 109.47369 * 180.02562 * 1 2 3 21 21 H 1.09008 * 109.46791 * 299.99968 * 1 2 3 22 22 H 1.08995 * 109.47526 * 59.99620 * 1 2 3 23 23 H 1.08005 * 120.30241 * 359.97438 * 6 5 3 24 24 H 1.09000 * 109.46656 * 89.99898 * 8 7 6 25 25 H 1.08994 * 109.47287 * 209.99549 * 8 7 6 26 26 H 1.09001 * 109.47009 * 330.00280 * 8 7 6 27 27 H 0.97005 * 119.99615 * 179.97438 * 14 13 11 28 28 H 1.07994 * 120.59306 * 359.95626 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.1999 0.0000 4 8 1.4021 2.2184 0.0005 5 6 3.5417 1.2773 -0.0006 6 6 4.1965 2.5169 -0.0011 7 6 5.5824 2.5545 -0.0022 8 6 6.2869 3.8867 -0.0022 9 7 6.2925 1.4490 0.0024 10 6 5.7187 0.2429 -0.0021 11 6 6.5254 -0.9182 -0.0021 12 1 6.0655 -1.8954 -0.0014 13 6 7.9213 -0.8012 -0.0090 14 7 8.4779 0.3815 -0.0100 15 14 8.9870 -2.3352 -0.0168 16 1 9.2625 -2.7395 -1.4190 17 1 10.2688 -2.0510 0.6772 18 1 8.2773 -3.4347 0.6851 19 6 4.3179 0.1197 -0.0006 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 3.6265 3.4343 -0.0015 24 1 6.4575 4.2074 1.0255 25 1 7.2431 3.7920 -0.5167 26 1 5.6696 4.6241 -0.5152 27 1 9.4446 0.4625 -0.0144 28 1 3.8518 -0.8545 0.0005 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044370298.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:09 Heat of formation + Delta-G solvation = -60.404013 kcal Electronic energy + Delta-G solvation = -14403.181152 eV Core-core repulsion = 11805.093971 eV Total energy + Delta-G solvation = -2598.087180 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.89896 -38.19586 -35.93047 -33.84361 -31.94132 -30.71430 -27.52890 -27.25956 -25.27421 -23.35426 -20.86718 -19.99785 -17.85111 -16.72818 -15.97405 -15.89448 -15.17644 -14.38027 -14.28917 -13.65875 -13.25963 -12.91132 -12.82205 -12.15446 -11.83610 -11.58226 -11.38807 -11.36780 -11.07595 -10.82220 -10.61914 -10.46588 -10.11344 -9.93162 -9.45547 -8.41070 -7.75468 -7.67215 -6.51810 -4.63719 1.82814 2.60848 3.04775 3.06658 3.09329 3.19510 3.56787 3.87875 4.62946 5.29269 5.35247 5.37349 5.66334 5.69426 5.73054 6.11123 6.36859 6.46850 6.55420 6.59707 6.71885 6.78324 7.00598 7.13497 7.32275 7.44622 7.74485 8.11040 8.31960 8.50517 8.76017 9.95005 10.20231 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.030991 B = 0.008545 C = 0.006731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.261900 B = 3276.020581 C = 4158.829591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.354 6.354 3 C 0.515 3.485 4 O -0.522 6.522 5 C -0.065 4.065 6 C -0.261 4.261 7 C 0.145 3.855 8 C -0.090 4.090 9 N -0.465 5.465 10 C 0.247 3.753 11 C -0.424 4.424 12 H 0.088 0.912 13 C 0.067 3.933 14 N -0.711 5.711 15 Si 0.910 3.090 16 H -0.268 1.268 17 H -0.276 1.276 18 H -0.260 1.260 19 C -0.213 4.213 20 H 0.097 0.903 21 H 0.058 0.942 22 H 0.058 0.942 23 H 0.109 0.891 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.275 0.725 28 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.983 -1.140 -0.020 5.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.270 6.270 3 C 0.361 3.639 4 O -0.412 6.412 5 C -0.072 4.072 6 C -0.284 4.284 7 C 0.000 4.000 8 C -0.147 4.147 9 N -0.180 5.180 10 C 0.122 3.878 11 C -0.455 4.455 12 H 0.106 0.894 13 C -0.159 4.159 14 N -0.332 5.332 15 Si 0.734 3.266 16 H -0.193 1.193 17 H -0.201 1.201 18 H -0.184 1.184 19 C -0.237 4.237 20 H 0.115 0.885 21 H 0.077 0.923 22 H 0.077 0.923 23 H 0.127 0.873 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.104 -0.718 -0.011 4.166 hybrid contribution -0.785 -0.663 0.002 1.028 sum -4.889 -1.381 -0.009 5.080 Atomic orbital electron populations 1.23171 0.77390 1.03131 1.02103 1.86623 1.22426 1.33466 1.84486 1.21857 0.89895 0.80656 0.71477 1.90721 1.67184 1.36238 1.47032 1.18903 0.86659 0.95685 1.05922 1.21158 0.94956 0.95359 1.16936 1.21104 0.89396 0.95309 0.94205 1.20512 1.00238 0.92520 1.01461 1.68492 1.37103 0.96446 1.15932 1.18584 0.88229 0.91563 0.89432 1.19661 0.90756 0.92844 1.42219 0.89409 1.26084 0.98930 0.97225 0.93614 1.70112 1.11601 1.23700 1.27764 0.86279 0.79228 0.81769 0.79321 1.19323 1.20059 1.18431 1.22152 0.95232 0.96421 1.09847 0.88458 0.92293 0.92284 0.87318 0.92001 0.91138 0.92546 0.91400 0.86621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.56 101.05 1.07 1.55 15 2 O -0.35 -6.57 9.91 -40.42 -0.40 -6.97 15 3 C 0.51 11.05 7.92 34.75 0.28 11.33 15 4 O -0.52 -11.69 16.23 -19.22 -0.31 -12.01 15 5 C -0.06 -1.53 5.90 -104.73 -0.62 -2.15 15 6 C -0.26 -6.14 9.32 -38.70 -0.36 -6.50 15 7 C 0.15 3.50 6.78 -82.63 -0.56 2.94 15 8 C -0.09 -1.74 10.16 36.01 0.37 -1.38 15 9 N -0.47 -12.50 7.74 -7.42 -0.06 -12.56 15 10 C 0.25 6.59 6.55 -85.02 -0.56 6.03 15 11 C -0.42 -10.91 9.14 -37.70 -0.34 -11.26 15 12 H 0.09 2.09 7.85 -52.49 -0.41 1.68 15 13 C 0.07 1.65 5.50 -17.34 -0.10 1.55 15 14 N -0.71 -18.21 11.46 55.55 0.64 -17.58 15 15 Si 0.91 17.89 29.56 -169.99 -5.02 12.86 15 16 H -0.27 -5.21 7.11 56.52 0.40 -4.81 15 17 H -0.28 -5.32 7.11 56.52 0.40 -4.92 15 18 H -0.26 -5.03 7.11 56.52 0.40 -4.63 15 19 C -0.21 -5.19 9.43 -38.26 -0.36 -5.55 15 20 H 0.10 0.96 8.14 -51.93 -0.42 0.54 15 21 H 0.06 0.75 8.14 -51.92 -0.42 0.33 15 22 H 0.06 0.76 8.14 -51.93 -0.42 0.33 15 23 H 0.11 2.41 7.73 -52.48 -0.41 2.00 15 24 H 0.06 1.11 8.14 -51.93 -0.42 0.69 15 25 H 0.07 1.38 8.14 -51.93 -0.42 0.96 15 26 H 0.06 0.94 8.07 -51.93 -0.42 0.53 15 27 H 0.27 6.35 8.29 -40.82 -0.34 6.02 15 28 H 0.12 2.61 7.70 -52.49 -0.40 2.20 15 LS Contribution 257.82 15.07 3.89 3.89 Total: -1.00 -29.51 257.82 -5.35 -34.86 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -2.89 Total: 0.92 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -1.19 Total: -3.42 kcal Atomic # 7 Polarization: -30.72 SS G_CDS: 0.58 Total: -30.14 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.71 Total: -18.97 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.02 Total: 12.86 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.51 -5.35 -34.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044370298.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.541 kcal (2) G-P(sol) polarization free energy of solvation -29.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds