Wall clock time and date at job start Mon Mar 30 2020 03:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31442 * 1 3 3 Si 1.86800 * 119.99686 * 2 1 4 4 H 1.48504 * 109.47118 * 269.99846 * 3 2 1 5 5 H 1.48499 * 109.47293 * 29.99850 * 3 2 1 6 6 H 1.48504 * 109.47104 * 150.00096 * 3 2 1 7 7 C 1.38754 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00293 * 179.97438 * 7 2 1 9 9 O 1.34924 * 119.99738 * 0.02562 * 7 2 1 10 10 C 1.34313 * 117.00023 * 179.97438 * 9 7 2 11 11 O 1.21207 * 119.99594 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99849 * 179.97438 * 10 9 7 13 13 C 1.50703 * 109.46849 * 180.02562 * 12 10 9 14 14 C 1.38308 * 119.96025 * 269.72524 * 13 12 10 15 15 C 1.38264 * 120.14963 * 179.72892 * 14 13 12 16 16 C 1.38127 * 120.07392 * 0.54482 * 15 14 13 17 17 C 1.38891 * 119.92208 * 359.73254 * 16 15 14 18 18 N 1.39674 * 120.06955 * 179.97438 * 17 16 15 19 19 C 1.38085 * 119.96657 * 90.00319 * 13 12 10 20 20 H 0.96996 * 119.99975 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47646 * 300.00339 * 12 10 9 22 22 H 1.08995 * 109.47329 * 60.00560 * 12 10 9 23 23 H 1.08003 * 119.92319 * 359.97438 * 14 13 12 24 24 H 1.08001 * 119.96687 * 180.27842 * 15 14 13 25 25 H 1.07997 * 120.03831 * 179.75158 * 16 15 14 26 26 H 0.97003 * 119.99328 * 180.02562 * 18 17 16 27 27 H 0.96996 * 120.00310 * 0.02562 * 18 17 16 28 28 H 1.07997 * 120.02900 * 359.97401 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4958 2.0465 -1.4001 5 1 1.4457 2.6527 0.7000 6 1 3.5459 1.4403 0.7000 7 6 2.0083 -1.2016 0.0005 8 1 3.0883 -1.2016 0.0001 9 8 1.3337 -2.3701 0.0005 10 6 2.0653 -3.4965 0.0005 11 8 3.2757 -3.4329 0.0010 12 6 1.3811 -4.8392 0.0011 13 6 2.4191 -5.9318 0.0016 14 6 2.8907 -6.4371 -1.1964 15 6 3.8471 -7.4356 -1.2005 16 6 4.3266 -7.9397 -0.0073 17 6 3.8509 -7.4386 1.1976 18 7 4.3332 -7.9465 2.4060 19 6 2.8941 -6.4314 1.1981 20 1 -0.4850 0.8400 -0.0004 21 1 0.7586 -4.9295 0.8913 22 1 0.7581 -4.9300 -0.8886 23 1 2.5139 -6.0480 -2.1308 24 1 4.2165 -7.8248 -2.1377 25 1 5.0706 -8.7224 -0.0112 26 1 4.0000 -7.5959 3.2468 27 1 5.0013 -8.6497 2.4044 28 1 2.5224 -6.0391 2.1332 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052923805.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:44 Heat of formation + Delta-G solvation = -60.849321 kcal Electronic energy + Delta-G solvation = -14145.763463 eV Core-core repulsion = 11547.656972 eV Total energy + Delta-G solvation = -2598.106490 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.45596 -38.51412 -35.31126 -34.33587 -32.14233 -31.92413 -28.68799 -27.43977 -25.05298 -22.17964 -21.56254 -19.70716 -17.64519 -16.74419 -16.50220 -16.37573 -15.60586 -14.82216 -14.43955 -14.28346 -13.76464 -13.45556 -12.91356 -12.77524 -12.13369 -11.80119 -11.56091 -11.18090 -11.01773 -10.74052 -10.40486 -10.33030 -10.26923 -9.73795 -8.96458 -8.51852 -8.44045 -7.32304 -6.35073 -4.02680 1.69340 1.92165 3.15685 3.22362 3.28675 3.62785 3.91691 4.00819 4.19630 4.84313 5.07993 5.14849 5.20819 5.41800 5.72468 5.73471 5.84306 6.03994 6.18239 6.23604 6.55274 6.79001 6.84857 7.03708 7.15463 7.46106 7.65484 7.84883 8.02456 8.80591 9.14120 9.94169 10.83276 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.051865 B = 0.005909 C = 0.005805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.737120 B = 4737.343274 C = 4822.146508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.380 4.380 8 H 0.094 0.906 9 O -0.218 6.218 10 C 0.401 3.599 11 O -0.547 6.547 12 C -0.071 4.071 13 C -0.007 4.007 14 C -0.161 4.161 15 C -0.075 4.075 16 C -0.205 4.205 17 C 0.210 3.790 18 N -0.883 5.883 19 C -0.180 4.180 20 H 0.268 0.732 21 H 0.099 0.901 22 H 0.101 0.899 23 H 0.117 0.883 24 H 0.118 0.882 25 H 0.114 0.886 26 H 0.396 0.604 27 H 0.394 0.606 28 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.229 -13.668 1.647 14.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.163 4.163 3 Si 0.767 3.233 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.457 4.457 8 H 0.112 0.888 9 O -0.126 6.126 10 C 0.247 3.753 11 O -0.443 6.443 12 C -0.109 4.109 13 C -0.008 4.008 14 C -0.181 4.181 15 C -0.093 4.093 16 C -0.227 4.227 17 C 0.107 3.893 18 N -0.423 5.423 19 C -0.202 4.202 20 H 0.078 0.922 21 H 0.118 0.882 22 H 0.120 0.880 23 H 0.135 0.865 24 H 0.136 0.864 25 H 0.132 0.868 26 H 0.224 0.776 27 H 0.221 0.779 28 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 4.338 -13.454 1.609 14.228 hybrid contribution 0.586 0.721 0.348 0.992 sum 4.923 -12.734 1.957 13.792 Atomic orbital electron populations 1.69993 1.05952 1.27525 1.47080 1.25310 0.95796 0.98773 0.96385 0.85699 0.79036 0.79910 0.78692 1.19928 1.20384 1.19168 1.21209 0.92340 0.79938 1.52190 0.88797 1.83882 1.39359 1.13327 1.76027 1.22994 0.86742 0.86894 0.78648 1.90578 1.15619 1.88009 1.50100 1.20132 0.96787 0.88654 1.05291 1.19137 0.95196 0.93590 0.92910 1.20776 1.00457 0.99502 0.97357 1.20765 0.95692 0.95820 0.97057 1.20456 1.05645 1.05229 0.91387 1.17675 0.92644 0.92588 0.86386 1.42392 1.49343 1.45332 1.05189 1.20397 1.01553 1.00184 0.98103 0.92187 0.88238 0.88029 0.86461 0.86416 0.86828 0.77628 0.77850 0.86452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.87 13.67 55.48 0.76 -25.11 15 2 C 0.04 1.17 5.49 -17.53 -0.10 1.08 15 3 Si 0.94 21.76 29.55 -169.99 -5.02 16.74 15 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 15 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 15 7 C -0.38 -11.54 9.65 30.92 0.30 -11.24 15 8 H 0.09 2.88 6.86 -52.49 -0.36 2.52 15 9 O -0.22 -6.40 9.75 -20.72 -0.20 -6.60 15 10 C 0.40 10.18 7.90 36.00 0.28 10.47 15 11 O -0.55 -15.25 15.27 -19.05 -0.29 -15.55 15 12 C -0.07 -1.33 5.94 -29.04 -0.17 -1.51 15 13 C -0.01 -0.13 4.37 -104.65 -0.46 -0.59 15 14 C -0.16 -2.65 9.70 -39.55 -0.38 -3.03 15 15 C -0.07 -1.07 10.04 -39.61 -0.40 -1.47 15 16 C -0.20 -2.81 9.90 -39.38 -0.39 -3.20 15 17 C 0.21 3.03 6.75 -83.79 -0.57 2.46 15 18 N -0.88 -9.37 9.09 32.41 0.29 -9.07 15 19 C -0.18 -2.96 9.55 -39.38 -0.38 -3.34 15 20 H 0.27 7.32 8.31 -40.82 -0.34 6.98 15 21 H 0.10 1.66 8.08 -51.93 -0.42 1.25 15 22 H 0.10 1.70 8.08 -51.93 -0.42 1.28 15 23 H 0.12 1.80 8.06 -52.48 -0.42 1.38 15 24 H 0.12 1.36 8.06 -52.49 -0.42 0.93 15 25 H 0.11 1.26 8.06 -52.49 -0.42 0.84 15 26 H 0.40 3.66 8.84 -40.82 -0.36 3.30 15 27 H 0.39 3.23 8.84 -40.82 -0.36 2.87 15 28 H 0.12 1.81 8.06 -52.49 -0.42 1.39 15 LS Contribution 259.17 15.07 3.91 3.91 Total: -1.00 -34.96 259.17 -5.56 -40.52 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -2.75 Total: 5.53 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -2.26 Total: -10.37 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 1.05 Total: -34.18 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.49 Total: -22.14 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -34.96 -5.56 -40.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052923805.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.333 kcal (2) G-P(sol) polarization free energy of solvation -34.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds