Wall clock time and date at job start Mon Mar 30 2020 03:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31442 * 1 3 3 Si 1.86800 * 119.99686 * 2 1 4 4 H 1.48504 * 109.47118 * 269.99846 * 3 2 1 5 5 H 1.48499 * 109.47293 * 29.99850 * 3 2 1 6 6 H 1.48504 * 109.47104 * 150.00096 * 3 2 1 7 7 C 1.38754 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00293 * 179.97438 * 7 2 1 9 9 O 1.34924 * 119.99738 * 0.02562 * 7 2 1 10 10 C 1.34313 * 117.00023 * 179.97438 * 9 7 2 11 11 O 1.21207 * 119.99594 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99849 * 179.97438 * 10 9 7 13 13 C 1.50703 * 109.46849 * 180.02562 * 12 10 9 14 14 C 1.38308 * 119.96025 * 269.72524 * 13 12 10 15 15 C 1.38264 * 120.14963 * 179.72892 * 14 13 12 16 16 C 1.38127 * 120.07392 * 0.54482 * 15 14 13 17 17 C 1.38891 * 119.92208 * 359.73254 * 16 15 14 18 18 N 1.39674 * 120.06955 * 179.97438 * 17 16 15 19 19 C 1.38085 * 119.96657 * 90.00319 * 13 12 10 20 20 H 0.96996 * 119.99975 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47646 * 300.00339 * 12 10 9 22 22 H 1.08995 * 109.47329 * 60.00560 * 12 10 9 23 23 H 1.08003 * 119.92319 * 359.97438 * 14 13 12 24 24 H 1.08001 * 119.96687 * 180.27842 * 15 14 13 25 25 H 1.07997 * 120.03831 * 179.75158 * 16 15 14 26 26 H 0.97003 * 119.99328 * 180.02562 * 18 17 16 27 27 H 0.96996 * 120.00310 * 0.02562 * 18 17 16 28 28 H 1.07997 * 120.02900 * 359.97401 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4958 2.0465 -1.4001 5 1 1.4457 2.6527 0.7000 6 1 3.5459 1.4403 0.7000 7 6 2.0083 -1.2016 0.0005 8 1 3.0883 -1.2016 0.0001 9 8 1.3337 -2.3701 0.0005 10 6 2.0653 -3.4965 0.0005 11 8 3.2757 -3.4329 0.0010 12 6 1.3811 -4.8392 0.0011 13 6 2.4191 -5.9318 0.0016 14 6 2.8907 -6.4371 -1.1964 15 6 3.8471 -7.4356 -1.2005 16 6 4.3266 -7.9397 -0.0073 17 6 3.8509 -7.4386 1.1976 18 7 4.3332 -7.9465 2.4060 19 6 2.8941 -6.4314 1.1981 20 1 -0.4850 0.8400 -0.0004 21 1 0.7586 -4.9295 0.8913 22 1 0.7581 -4.9300 -0.8886 23 1 2.5139 -6.0480 -2.1308 24 1 4.2165 -7.8248 -2.1377 25 1 5.0706 -8.7224 -0.0112 26 1 4.0000 -7.5959 3.2468 27 1 5.0013 -8.6497 2.4044 28 1 2.5224 -6.0391 2.1332 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052923805.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:44 Heat of formation + Delta-G solvation = -84.729180 kcal Electronic energy + Delta-G solvation = -14146.798971 eV Core-core repulsion = 11547.656972 eV Total energy + Delta-G solvation = -2599.141999 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.15898 -40.05873 -37.29613 -35.57247 -34.29766 -33.29501 -29.90349 -28.85309 -27.13269 -23.45559 -22.94617 -21.37609 -19.85742 -18.47475 -17.78447 -17.60058 -16.77082 -16.63398 -16.48644 -16.14631 -15.10393 -14.61533 -14.42788 -14.08115 -13.74469 -13.56843 -13.42672 -12.84893 -12.36746 -12.26486 -12.16569 -12.01943 -11.85853 -11.44443 -11.00980 -10.69025 -9.67717 -8.53282 -8.37192 -6.33157 0.48063 0.75276 1.31912 1.34072 1.51381 1.67245 2.13871 2.72151 2.97555 3.06614 3.22937 3.74912 4.02596 4.29778 4.40973 4.51267 4.62355 4.75680 4.79337 5.03802 5.11184 5.23005 5.41803 5.64381 5.81651 5.84527 6.03563 6.63999 6.69685 6.92022 7.06087 7.79474 8.67729 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.051865 B = 0.005909 C = 0.005805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.737120 B = 4737.343274 C = 4822.146508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.004 4.004 3 Si 1.017 2.983 4 H -0.260 1.260 5 H -0.259 1.259 6 H -0.265 1.265 7 C -0.422 4.422 8 H 0.079 0.921 9 O -0.247 6.247 10 C 0.400 3.600 11 O -0.576 6.576 12 C -0.060 4.060 13 C -0.033 4.033 14 C -0.184 4.184 15 C -0.074 4.074 16 C -0.205 4.205 17 C 0.209 3.791 18 N -0.869 5.869 19 C -0.203 4.203 20 H 0.279 0.721 21 H 0.119 0.881 22 H 0.122 0.878 23 H 0.119 0.881 24 H 0.147 0.853 25 H 0.146 0.854 26 H 0.403 0.597 27 H 0.408 0.592 28 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.206 -14.346 1.742 15.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.204 4.204 3 Si 0.836 3.164 4 H -0.184 1.184 5 H -0.182 1.182 6 H -0.190 1.190 7 C -0.497 4.497 8 H 0.096 0.904 9 O -0.156 6.156 10 C 0.248 3.752 11 O -0.473 6.473 12 C -0.097 4.097 13 C -0.034 4.034 14 C -0.205 4.205 15 C -0.093 4.093 16 C -0.227 4.227 17 C 0.104 3.896 18 N -0.409 5.409 19 C -0.226 4.226 20 H 0.088 0.912 21 H 0.137 0.863 22 H 0.140 0.860 23 H 0.137 0.863 24 H 0.165 0.835 25 H 0.163 0.837 26 H 0.232 0.768 27 H 0.239 0.761 28 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.316 -14.176 1.727 15.238 hybrid contribution 0.326 0.775 0.347 0.909 sum 5.642 -13.402 2.074 14.688 Atomic orbital electron populations 1.70073 1.07591 1.29335 1.47121 1.26523 0.96900 1.02274 0.94746 0.84643 0.77639 0.74619 0.79546 1.18425 1.18249 1.18957 1.21395 0.92069 0.81330 1.54955 0.90352 1.83906 1.40339 1.14191 1.77181 1.24283 0.86738 0.87965 0.76217 1.90534 1.17178 1.88574 1.50992 1.20223 0.97287 0.85105 1.07116 1.19161 0.96071 0.94014 0.94111 1.20972 1.01686 1.00777 0.97022 1.21135 0.94593 0.94792 0.98763 1.20868 1.05650 1.05415 0.90776 1.17820 0.91921 0.91911 0.87990 1.42360 1.49036 1.45129 1.04406 1.20538 1.02824 1.01490 0.97770 0.91195 0.86306 0.86043 0.86325 0.83520 0.83652 0.76792 0.76149 0.86445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.34 13.67 21.62 0.30 -54.04 15 2 C 0.00 -0.26 5.49 84.87 0.47 0.21 15 3 Si 1.02 44.42 29.55 68.60 2.03 46.45 15 4 H -0.26 -10.71 7.11 99.48 0.71 -10.01 15 5 H -0.26 -10.38 7.11 99.48 0.71 -9.68 15 6 H -0.27 -11.40 7.11 99.48 0.71 -10.69 15 7 C -0.42 -26.39 9.65 67.94 0.66 -25.73 15 8 H 0.08 5.00 6.86 -2.91 -0.02 4.98 15 9 O -0.25 -15.01 9.75 14.81 0.14 -14.87 15 10 C 0.40 20.93 7.90 71.23 0.56 21.49 15 11 O -0.58 -33.12 15.27 20.78 0.32 -32.80 15 12 C -0.06 -2.28 5.94 29.10 0.17 -2.11 15 13 C -0.03 -1.16 4.37 -19.88 -0.09 -1.25 15 14 C -0.18 -5.96 9.70 22.29 0.22 -5.74 15 15 C -0.07 -1.98 10.04 22.25 0.22 -1.75 15 16 C -0.20 -5.05 9.90 22.40 0.22 -4.83 15 17 C 0.21 5.62 6.75 38.21 0.26 5.88 15 18 N -0.87 -16.32 9.09 -51.37 -0.47 -16.79 15 19 C -0.20 -6.60 9.55 22.40 0.21 -6.38 15 20 H 0.28 15.14 8.31 -92.71 -0.77 14.37 15 21 H 0.12 3.99 8.08 -2.39 -0.02 3.97 15 22 H 0.12 4.07 8.08 -2.39 -0.02 4.05 15 23 H 0.12 3.64 8.06 -2.91 -0.02 3.62 15 24 H 0.15 2.94 8.06 -2.91 -0.02 2.92 15 25 H 0.15 2.61 8.06 -2.91 -0.02 2.59 15 26 H 0.40 6.64 8.84 -92.71 -0.82 5.82 15 27 H 0.41 5.41 8.84 -92.71 -0.82 4.60 15 28 H 0.12 3.64 8.06 -2.91 -0.02 3.61 15 Total: -1.00 -76.90 259.17 4.78 -72.12 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: -0.44 Total: 20.16 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: 2.90 Total: -20.23 kcal Atomic # 7 Polarization: -70.66 SS G_CDS: -0.17 Total: -70.84 kcal Atomic # 8 Polarization: -48.13 SS G_CDS: 0.46 Total: -47.67 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -76.90 4.78 -72.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052923805.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.605 kcal (2) G-P(sol) polarization free energy of solvation -76.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds