Wall clock time and date at job start Mon Mar 30 2020 03:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00066 * 2 1 4 4 H 1.48504 * 109.47177 * 269.99401 * 3 2 1 5 5 H 1.48497 * 109.47242 * 29.99528 * 3 2 1 6 6 H 1.48502 * 109.47533 * 149.99837 * 3 2 1 7 7 C 1.37883 * 119.99838 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99752 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00152 * 0.02562 * 7 2 1 10 10 H 1.09000 * 110.64635 * 56.83433 * 9 7 2 11 11 C 1.54448 * 110.72646 * 179.97438 * 9 7 2 12 12 O 1.43891 * 105.07942 * 140.33074 * 11 9 7 13 13 C 1.43780 * 107.10994 * 1.70503 * 12 11 9 14 14 H 1.08995 * 110.11134 * 94.15502 * 13 12 11 15 15 C 1.50693 * 110.11545 * 215.74197 * 13 12 11 16 16 C 1.38678 * 120.41977 * 298.56312 * 15 13 12 17 17 C 1.38628 * 118.42181 * 179.97438 * 16 15 13 18 18 C 1.38230 * 119.15851 * 359.97438 * 17 16 15 19 19 N 1.31854 * 120.76583 * 0.02562 * 18 17 16 20 20 C 1.31878 * 121.72440 * 0.02562 * 19 18 17 21 21 O 1.44394 * 106.16977 * 334.91825 * 13 12 11 22 22 H 0.96996 * 120.00139 * 0.02562 * 1 2 3 23 23 H 1.08993 * 110.32553 * 21.42818 * 11 9 7 24 24 H 1.08999 * 110.40459 * 259.27009 * 11 9 7 25 25 H 1.08001 * 120.78723 * 0.02562 * 16 15 13 26 26 H 1.07992 * 120.41719 * 180.02562 * 17 16 15 27 27 H 1.08001 * 119.61116 * 180.30080 * 18 17 16 28 28 H 1.08001 * 119.61470 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.5759 -2.5532 -0.8535 11 6 2.2287 -3.6948 0.0005 12 8 1.6377 -4.6616 0.8874 13 6 0.3913 -4.1098 1.3448 14 1 -0.4266 -4.4580 0.7141 15 6 0.1445 -4.5048 2.7779 16 6 0.0214 -5.8414 3.1266 17 6 -0.2046 -6.1580 4.4572 18 6 -0.2987 -5.1382 5.3856 19 7 -0.1766 -3.8779 5.0178 20 6 0.0379 -3.5399 3.7613 21 8 0.5243 -2.6757 1.2409 22 1 -0.4850 0.8400 -0.0004 23 1 3.2049 -3.3856 0.3739 24 1 2.3220 -4.1094 -1.0032 25 1 0.1007 -6.6172 2.3795 26 1 -0.3052 -7.1884 4.7646 27 1 -0.4699 -5.3769 6.4249 28 1 0.1322 -2.4967 3.4979 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058521176.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:13 Heat of formation + Delta-G solvation = -74.608811 kcal Electronic energy + Delta-G solvation = -14727.884959 eV Core-core repulsion = 12129.181812 eV Total energy + Delta-G solvation = -2598.703147 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.48427 -40.38328 -35.85998 -34.82108 -33.81823 -32.62818 -30.65342 -27.14759 -26.01907 -24.57332 -23.11685 -22.53541 -19.18004 -18.13787 -17.83482 -17.46286 -16.98510 -16.42870 -16.11040 -15.86795 -15.18992 -14.70182 -14.42466 -14.32690 -13.97708 -13.67764 -13.14590 -12.83830 -12.78913 -12.39375 -12.15167 -11.41845 -10.95942 -10.86531 -10.76385 -10.59354 -10.26135 -10.01777 -8.27936 -6.50255 0.09122 0.30806 1.40421 1.42716 1.53458 2.35187 2.66113 2.86896 2.98350 3.33715 3.57021 3.97075 3.99355 4.11906 4.14376 4.21081 4.33747 4.46227 4.55642 4.71564 4.85151 5.08702 5.17316 5.20330 5.34956 5.60544 5.76114 5.97646 6.34177 6.66810 7.00023 7.26878 8.81082 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.039410 B = 0.008090 C = 0.007173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.314398 B = 3460.157525 C = 3902.858895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.027 3.973 3 Si 0.969 3.031 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.555 4.555 8 H 0.074 0.926 9 C 0.171 3.829 10 H 0.024 0.976 11 C 0.035 3.965 12 O -0.399 6.399 13 C 0.260 3.740 14 H 0.078 0.922 15 C -0.156 4.156 16 C -0.056 4.056 17 C -0.162 4.162 18 C 0.091 3.909 19 N -0.515 5.515 20 C 0.110 3.890 21 O -0.383 6.383 22 H 0.267 0.733 23 H 0.074 0.926 24 H 0.093 0.907 25 H 0.157 0.843 26 H 0.182 0.818 27 H 0.193 0.807 28 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.015 -11.273 5.251 12.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.793 3.207 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.592 4.592 8 H 0.092 0.908 9 C 0.116 3.884 10 H 0.041 0.959 11 C -0.041 4.041 12 O -0.321 6.321 13 C 0.164 3.836 14 H 0.095 0.905 15 C -0.158 4.158 16 C -0.082 4.082 17 C -0.181 4.181 18 C -0.067 4.067 19 N -0.224 5.224 20 C -0.046 4.046 21 O -0.304 6.304 22 H 0.076 0.924 23 H 0.092 0.908 24 H 0.111 0.889 25 H 0.175 0.825 26 H 0.200 0.800 27 H 0.209 0.791 28 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.205 -10.535 6.081 12.166 hybrid contribution 0.201 0.566 -1.067 1.224 sum -0.004 -9.970 5.014 11.159 Atomic orbital electron populations 1.70128 1.07812 1.28171 1.47629 1.25982 0.95674 1.03397 0.92600 0.85396 0.78559 0.77929 0.78815 1.18923 1.20891 1.18935 1.21299 0.93381 0.90338 1.54146 0.90804 1.21314 0.88825 0.94687 0.83557 0.95876 1.24071 0.97739 0.88370 0.93954 1.88715 1.35974 1.42528 1.64835 1.22752 0.87591 0.81668 0.91625 0.90487 1.20802 1.03922 0.96090 0.95000 1.21694 0.93718 0.94456 0.98348 1.22530 1.00384 1.02855 0.92347 1.23552 0.93782 0.87222 1.02098 1.67770 1.13354 1.22910 1.18349 1.22433 0.94110 1.00053 0.87981 1.89695 1.77137 1.19065 1.44485 0.92424 0.90809 0.88864 0.82497 0.80023 0.79058 0.84810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.21 13.16 21.45 0.28 -52.92 15 2 C 0.03 1.48 5.45 84.66 0.46 1.94 15 3 Si 0.97 43.13 29.54 68.60 2.03 45.15 15 4 H -0.26 -11.12 7.11 99.48 0.71 -10.41 15 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 15 6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 15 7 C -0.55 -30.67 8.81 25.60 0.23 -30.44 15 8 H 0.07 3.89 7.55 -2.91 -0.02 3.87 15 9 C 0.17 8.87 3.16 30.34 0.10 8.96 15 10 H 0.02 1.28 8.14 -2.39 -0.02 1.26 15 11 C 0.03 1.48 7.65 72.47 0.55 2.04 15 12 O -0.40 -16.64 11.18 -125.98 -1.41 -18.05 15 13 C 0.26 11.08 4.21 71.23 0.30 11.38 15 14 H 0.08 3.09 8.14 -2.39 -0.02 3.07 15 15 C -0.16 -5.88 5.59 -19.77 -0.11 -5.99 15 16 C -0.06 -1.58 9.82 22.47 0.22 -1.36 15 17 C -0.16 -3.55 10.11 22.36 0.23 -3.32 15 18 C 0.09 2.31 11.18 84.69 0.95 3.25 15 19 N -0.51 -18.32 10.36 -195.84 -2.03 -20.35 15 20 C 0.11 4.47 10.56 84.67 0.89 5.36 15 21 O -0.38 -20.23 9.62 -125.98 -1.21 -21.44 15 22 H 0.27 14.83 8.31 -92.71 -0.77 14.06 15 23 H 0.07 3.11 7.67 -2.39 -0.02 3.09 15 24 H 0.09 3.38 8.14 -2.39 -0.02 3.36 15 25 H 0.16 3.59 8.06 -2.91 -0.02 3.57 15 26 H 0.18 2.21 8.06 -2.91 -0.02 2.18 15 27 H 0.19 3.18 8.06 -2.91 -0.02 3.16 15 28 H 0.13 6.29 7.04 -2.91 -0.02 6.27 15 Total: -1.00 -67.48 250.87 2.63 -64.84 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: 1.16 Total: 10.94 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: 3.81 Total: -8.17 kcal Atomic # 7 Polarization: -71.53 SS G_CDS: -1.75 Total: -73.28 kcal Atomic # 8 Polarization: -36.87 SS G_CDS: -2.62 Total: -39.49 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -67.48 2.63 -64.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058521176.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.766 kcal (2) G-P(sol) polarization free energy of solvation -67.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds