Wall clock time and date at job start Mon Mar 30 2020 03:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86806 * 120.00458 * 2 1 4 4 H 1.48497 * 109.46967 * 270.00355 * 3 2 1 5 5 H 1.48498 * 109.46699 * 30.00170 * 3 2 1 6 6 H 1.48494 * 109.47265 * 149.99763 * 3 2 1 7 7 C 1.37884 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99808 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99936 * 179.97438 * 7 2 1 10 10 H 1.09000 * 110.75875 * 298.28494 * 9 7 2 11 11 C 1.54913 * 110.69502 * 175.11241 * 9 7 2 12 12 O 1.44785 * 101.72430 * 206.04506 * 11 9 7 13 13 C 1.43757 * 104.81523 * 36.10290 * 12 11 9 14 14 H 1.08998 * 109.51158 * 95.49125 * 13 12 11 15 15 C 1.50696 * 109.63313 * 215.81324 * 13 12 11 16 16 C 1.38678 * 120.41768 * 299.34178 * 15 13 12 17 17 C 1.38627 * 118.42399 * 180.02562 * 16 15 13 18 18 C 1.38220 * 119.16050 * 0.02562 * 17 16 15 19 19 N 1.31860 * 120.76284 * 359.97438 * 18 17 16 20 20 C 1.31884 * 121.72590 * 0.02562 * 19 18 17 21 21 O 1.43376 * 108.78908 * 335.68784 * 13 12 11 22 22 H 0.96999 * 119.99740 * 359.97438 * 1 2 3 23 23 H 1.09009 * 110.97301 * 324.15068 * 11 9 7 24 24 H 1.08994 * 110.98192 * 87.89791 * 11 9 7 25 25 H 1.07999 * 120.78603 * 0.03631 * 16 15 13 26 26 H 1.08000 * 120.41839 * 180.02562 * 17 16 15 27 27 H 1.07999 * 119.62072 * 180.02562 * 18 17 16 28 28 H 1.08003 * 119.61187 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5114 -1.1941 -0.0011 10 1 3.8974 -0.7109 -0.8987 11 6 4.0589 -2.6381 0.1218 12 8 5.3546 -2.4109 0.7267 13 6 5.1508 -1.3118 1.6306 14 1 4.9603 -1.6954 2.6329 15 6 6.3772 -0.4364 1.6480 16 6 7.6016 -0.9509 2.0472 17 6 8.7027 -0.1088 2.0480 18 6 8.5447 1.2067 1.6541 19 7 7.3649 1.6619 1.2806 20 6 6.2960 0.8895 1.2674 21 8 4.0214 -0.5499 1.1838 22 1 -0.4850 0.8401 0.0004 23 1 3.4253 -3.2416 0.7718 24 1 4.1616 -3.1014 -0.8594 25 1 7.6950 -1.9834 2.3501 26 1 9.6717 -0.4758 2.3524 27 1 9.3976 1.8692 1.6515 28 1 5.3463 1.2978 0.9548 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058521181.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:18 Heat of formation + Delta-G solvation = -46.093332 kcal Electronic energy + Delta-G solvation = -14926.822040 eV Core-core repulsion = 12329.355417 eV Total energy + Delta-G solvation = -2597.466623 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.25389 -39.01551 -34.34271 -33.04174 -32.40216 -31.40781 -29.23812 -25.44849 -24.59554 -23.32280 -21.56239 -21.00397 -17.35408 -17.09808 -16.58527 -15.99502 -15.47439 -15.20920 -14.65416 -14.03198 -13.58793 -13.47644 -12.94014 -12.77016 -12.59973 -12.26818 -11.98976 -11.44228 -10.86309 -10.37709 -10.08976 -9.72343 -9.65957 -9.49917 -9.18186 -8.91646 -8.70495 -8.54546 -6.25047 -4.37193 1.24280 1.43205 3.31176 3.37152 3.51762 3.90629 4.30574 4.37115 4.48504 4.75519 4.97382 5.16332 5.18456 5.29867 5.44894 5.68453 5.76316 5.79137 5.91077 6.06690 6.12085 6.23405 6.36320 6.46997 6.89358 6.97095 7.43761 7.94123 8.15790 8.24184 8.72755 9.36303 10.84617 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.036266 B = 0.010316 C = 0.008322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.877245 B = 2713.598729 C = 3363.863394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.088 3.912 3 Si 0.873 3.127 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.224 1.224 7 C -0.533 4.533 8 H 0.083 0.917 9 C 0.148 3.852 10 H 0.044 0.956 11 C 0.033 3.967 12 O -0.393 6.393 13 C 0.270 3.730 14 H 0.082 0.918 15 C -0.150 4.150 16 C -0.056 4.056 17 C -0.184 4.184 18 C 0.091 3.909 19 N -0.491 5.491 20 C 0.122 3.878 21 O -0.378 6.378 22 H 0.268 0.732 23 H 0.073 0.927 24 H 0.095 0.905 25 H 0.134 0.866 26 H 0.132 0.868 27 H 0.152 0.848 28 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.121 -1.155 3.377 14.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.118 4.118 3 Si 0.700 3.300 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.148 1.148 7 C -0.569 4.569 8 H 0.101 0.899 9 C 0.094 3.906 10 H 0.061 0.939 11 C -0.043 4.043 12 O -0.314 6.314 13 C 0.173 3.827 14 H 0.099 0.901 15 C -0.153 4.153 16 C -0.082 4.082 17 C -0.204 4.204 18 C -0.066 4.066 19 N -0.199 5.199 20 C -0.034 4.034 21 O -0.300 6.300 22 H 0.078 0.922 23 H 0.091 0.909 24 H 0.113 0.887 25 H 0.152 0.848 26 H 0.150 0.850 27 H 0.169 0.831 28 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 13.989 -0.104 3.175 14.345 hybrid contribution 0.313 -0.178 0.258 0.443 sum 14.302 -0.282 3.433 14.711 Atomic orbital electron populations 1.69900 1.06688 1.27804 1.47659 1.25026 0.94719 0.99884 0.92162 0.86997 0.82308 0.82174 0.78552 1.20697 1.21370 1.14816 1.20861 0.86886 0.95307 1.53858 0.89878 1.21776 0.96100 0.87839 0.84915 0.93854 1.24401 0.82155 0.99440 0.98291 1.89084 1.32268 1.50608 1.59416 1.22372 0.84908 0.81778 0.93623 0.90082 1.21363 0.96079 0.96768 1.01061 1.21380 0.91708 0.99957 0.95147 1.22048 0.99567 0.95412 1.03327 1.22785 0.95311 0.93798 0.94675 1.67825 0.99327 1.38503 1.14291 1.23186 0.97579 0.90052 0.92572 1.89312 1.42852 1.51236 1.46575 0.92189 0.90896 0.88692 0.84802 0.84996 0.83113 0.81161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.25 13.96 55.43 0.77 -25.48 15 2 C 0.09 2.47 5.47 -17.82 -0.10 2.37 15 3 Si 0.87 21.17 27.12 -169.99 -4.61 16.56 15 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 15 6 H -0.22 -5.16 3.43 56.52 0.19 -4.96 15 7 C -0.53 -14.43 9.41 -34.44 -0.32 -14.76 15 8 H 0.08 2.38 8.02 -52.49 -0.42 1.96 15 9 C 0.15 3.43 2.89 -26.87 -0.08 3.35 15 10 H 0.04 1.01 7.70 -51.93 -0.40 0.61 15 11 C 0.03 0.64 7.37 38.17 0.28 0.93 15 12 O -0.39 -7.54 11.25 -59.04 -0.66 -8.20 15 13 C 0.27 5.17 4.32 36.00 0.16 5.33 15 14 H 0.08 1.44 8.14 -51.93 -0.42 1.02 15 15 C -0.15 -2.65 5.58 -104.48 -0.58 -3.23 15 16 C -0.06 -0.80 9.80 -39.28 -0.38 -1.19 15 17 C -0.18 -2.29 10.11 -39.44 -0.40 -2.69 15 18 C 0.09 1.25 11.18 -17.55 -0.20 1.05 15 19 N -0.49 -8.51 10.36 -13.25 -0.14 -8.65 15 20 C 0.12 2.28 10.55 -17.55 -0.19 2.10 15 21 O -0.38 -8.54 6.74 -59.04 -0.40 -8.94 15 22 H 0.27 7.47 8.31 -40.82 -0.34 7.13 15 23 H 0.07 1.40 8.04 -51.92 -0.42 0.99 15 24 H 0.09 1.65 8.14 -51.93 -0.42 1.22 15 25 H 0.13 1.65 8.06 -52.49 -0.42 1.23 15 26 H 0.13 1.17 8.06 -52.49 -0.42 0.75 15 27 H 0.15 1.53 8.06 -52.49 -0.42 1.11 15 28 H 0.17 3.46 5.12 -52.48 -0.27 3.19 15 LS Contribution 241.39 15.07 3.64 3.64 Total: -1.00 -30.36 241.39 -6.17 -36.53 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -2.96 Total: 1.26 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -1.81 Total: -6.73 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.64 Total: -34.12 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -1.06 Total: -17.14 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.61 Total: 16.56 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -30.36 -6.17 -36.53 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058521181.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.562 kcal (2) G-P(sol) polarization free energy of solvation -30.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds