Wall clock time and date at job start Mon Mar 30 2020 03:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86806 * 120.00458 * 2 1 4 4 H 1.48497 * 109.46967 * 270.00355 * 3 2 1 5 5 H 1.48498 * 109.46699 * 30.00170 * 3 2 1 6 6 H 1.48494 * 109.47265 * 149.99763 * 3 2 1 7 7 C 1.37884 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99808 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99936 * 179.97438 * 7 2 1 10 10 H 1.09000 * 110.75875 * 298.28494 * 9 7 2 11 11 C 1.54913 * 110.69502 * 175.11241 * 9 7 2 12 12 O 1.44785 * 101.72430 * 206.04506 * 11 9 7 13 13 C 1.43757 * 104.81523 * 36.10290 * 12 11 9 14 14 H 1.08998 * 109.51158 * 95.49125 * 13 12 11 15 15 C 1.50696 * 109.63313 * 215.81324 * 13 12 11 16 16 C 1.38678 * 120.41768 * 299.34178 * 15 13 12 17 17 C 1.38627 * 118.42399 * 180.02562 * 16 15 13 18 18 C 1.38220 * 119.16050 * 0.02562 * 17 16 15 19 19 N 1.31860 * 120.76284 * 359.97438 * 18 17 16 20 20 C 1.31884 * 121.72590 * 0.02562 * 19 18 17 21 21 O 1.43376 * 108.78908 * 335.68784 * 13 12 11 22 22 H 0.96999 * 119.99740 * 359.97438 * 1 2 3 23 23 H 1.09009 * 110.97301 * 324.15068 * 11 9 7 24 24 H 1.08994 * 110.98192 * 87.89791 * 11 9 7 25 25 H 1.07999 * 120.78603 * 0.03631 * 16 15 13 26 26 H 1.08000 * 120.41839 * 180.02562 * 17 16 15 27 27 H 1.07999 * 119.62072 * 180.02562 * 18 17 16 28 28 H 1.08003 * 119.61187 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5114 -1.1941 -0.0011 10 1 3.8974 -0.7109 -0.8987 11 6 4.0589 -2.6381 0.1218 12 8 5.3546 -2.4109 0.7267 13 6 5.1508 -1.3118 1.6306 14 1 4.9603 -1.6954 2.6329 15 6 6.3772 -0.4364 1.6480 16 6 7.6016 -0.9509 2.0472 17 6 8.7027 -0.1088 2.0480 18 6 8.5447 1.2067 1.6541 19 7 7.3649 1.6619 1.2806 20 6 6.2960 0.8895 1.2674 21 8 4.0214 -0.5499 1.1838 22 1 -0.4850 0.8401 0.0004 23 1 3.4253 -3.2416 0.7718 24 1 4.1616 -3.1014 -0.8594 25 1 7.6950 -1.9834 2.3501 26 1 9.6717 -0.4758 2.3524 27 1 9.3976 1.8692 1.6515 28 1 5.3463 1.2978 0.9548 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058521181.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:18 Heat of formation + Delta-G solvation = -67.232712 kcal Electronic energy + Delta-G solvation = -14927.738712 eV Core-core repulsion = 12329.355417 eV Total energy + Delta-G solvation = -2598.383295 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.62280 -40.42883 -36.02859 -34.87147 -33.86327 -32.67113 -30.93109 -27.18369 -26.11456 -24.51170 -22.98183 -22.69127 -19.22668 -18.56244 -18.09199 -17.40262 -16.97850 -16.63792 -16.10345 -15.73985 -15.12728 -14.83908 -14.58072 -14.29425 -14.02803 -13.84211 -13.58142 -12.88621 -12.71063 -12.35022 -11.88557 -11.60347 -11.05698 -10.84410 -10.81605 -10.59550 -10.26701 -9.98638 -8.41703 -6.56987 0.08050 0.30400 1.35305 1.37563 1.60464 2.34827 2.57490 2.81074 2.97192 3.27464 3.58653 3.91302 3.99030 4.04066 4.13643 4.16041 4.30301 4.41525 4.49318 4.66547 4.80673 4.85212 5.12367 5.16306 5.32421 5.47263 5.75201 6.05440 6.30602 6.56624 6.98785 7.20279 8.71263 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.036266 B = 0.010316 C = 0.008322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.877245 B = 2713.598729 C = 3363.863394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.037 3.963 3 Si 0.927 3.073 4 H -0.276 1.276 5 H -0.291 1.291 6 H -0.209 1.209 7 C -0.536 4.536 8 H 0.055 0.945 9 C 0.147 3.853 10 H 0.043 0.957 11 C 0.041 3.959 12 O -0.387 6.387 13 C 0.266 3.734 14 H 0.095 0.905 15 C -0.169 4.169 16 C -0.055 4.055 17 C -0.164 4.164 18 C 0.090 3.910 19 N -0.516 5.516 20 C 0.096 3.904 21 O -0.395 6.395 22 H 0.270 0.730 23 H 0.073 0.927 24 H 0.120 0.880 25 H 0.157 0.843 26 H 0.179 0.821 27 H 0.189 0.811 28 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.596 -1.337 4.028 18.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.164 4.164 3 Si 0.752 3.248 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.132 1.132 7 C -0.573 4.573 8 H 0.074 0.926 9 C 0.092 3.908 10 H 0.061 0.939 11 C -0.035 4.035 12 O -0.308 6.308 13 C 0.170 3.830 14 H 0.112 0.888 15 C -0.172 4.172 16 C -0.081 4.081 17 C -0.183 4.183 18 C -0.067 4.067 19 N -0.226 5.226 20 C -0.059 4.059 21 O -0.318 6.318 22 H 0.079 0.921 23 H 0.092 0.908 24 H 0.138 0.862 25 H 0.175 0.825 26 H 0.196 0.804 27 H 0.206 0.794 28 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 17.476 -0.301 3.829 17.893 hybrid contribution -0.642 -0.187 0.103 0.677 sum 16.834 -0.488 3.932 17.294 Atomic orbital electron populations 1.70011 1.08237 1.28656 1.49967 1.25807 0.95314 1.03230 0.92078 0.86150 0.81702 0.78187 0.78801 1.20201 1.21705 1.13227 1.21104 0.89293 0.94117 1.52774 0.92644 1.21594 0.93681 0.90387 0.85156 0.93938 1.24325 0.82237 0.97225 0.99733 1.89079 1.31679 1.50624 1.59407 1.22590 0.84769 0.81794 0.93866 0.88794 1.21225 0.96686 0.96145 1.03143 1.21707 0.90865 1.01390 0.94178 1.22528 1.00782 0.94316 1.00661 1.23505 0.94941 0.95263 0.93034 1.67778 1.00265 1.39071 1.15445 1.22815 0.97414 0.90881 0.94792 1.89212 1.44470 1.51945 1.46143 0.92074 0.90841 0.86236 0.82490 0.80360 0.79383 0.83932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.98 13.96 21.45 0.30 -56.68 15 2 C 0.04 2.12 5.47 84.66 0.46 2.59 15 3 Si 0.93 44.70 27.12 68.60 1.86 46.56 15 4 H -0.28 -12.99 7.11 99.48 0.71 -12.28 15 5 H -0.29 -14.04 7.11 99.48 0.71 -13.33 15 6 H -0.21 -9.56 3.43 99.48 0.34 -9.22 15 7 C -0.54 -29.71 9.41 25.60 0.24 -29.47 15 8 H 0.06 3.30 8.02 -2.91 -0.02 3.27 15 9 C 0.15 6.78 2.89 30.50 0.09 6.87 15 10 H 0.04 1.97 7.70 -2.39 -0.02 1.96 15 11 C 0.04 1.54 7.37 72.64 0.54 2.07 15 12 O -0.39 -14.04 11.25 -126.22 -1.42 -15.46 15 13 C 0.27 9.82 4.32 71.23 0.31 10.13 15 14 H 0.09 3.19 8.14 -2.39 -0.02 3.17 15 15 C -0.17 -5.65 5.58 -19.78 -0.11 -5.76 15 16 C -0.06 -1.38 9.80 22.47 0.22 -1.16 15 17 C -0.16 -3.24 10.11 22.36 0.23 -3.01 15 18 C 0.09 2.09 11.18 84.68 0.95 3.04 15 19 N -0.52 -16.91 10.36 -195.85 -2.03 -18.94 15 20 C 0.10 3.52 10.55 84.67 0.89 4.41 15 21 O -0.40 -17.78 6.74 -126.22 -0.85 -18.63 15 22 H 0.27 15.54 8.31 -92.71 -0.77 14.77 15 23 H 0.07 2.77 8.04 -2.38 -0.02 2.75 15 24 H 0.12 3.92 8.14 -2.39 -0.02 3.90 15 25 H 0.16 3.14 8.06 -2.91 -0.02 3.11 15 26 H 0.18 1.90 8.06 -2.91 -0.02 1.88 15 27 H 0.19 2.85 8.06 -2.91 -0.02 2.82 15 28 H 0.14 5.87 5.12 -2.91 -0.01 5.85 15 Total: -1.00 -67.26 241.39 2.47 -64.79 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: 0.80 Total: 8.66 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: 3.81 Total: -10.30 kcal Atomic # 7 Polarization: -73.89 SS G_CDS: -1.73 Total: -75.62 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -2.27 Total: -34.09 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.86 Total: 46.56 kcal Total: -67.26 2.47 -64.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058521181.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.444 kcal (2) G-P(sol) polarization free energy of solvation -67.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds