Wall clock time and date at job start Mon Mar 30 2020 03:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 120.00035 * 2 1 4 4 H 1.48494 * 109.47149 * 270.00118 * 3 2 1 5 5 H 1.48501 * 109.46926 * 29.99784 * 3 2 1 6 6 H 1.48498 * 109.47229 * 149.99677 * 3 2 1 7 7 C 1.37873 * 120.00284 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00524 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99796 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.28173 * 59.30126 * 9 7 2 11 11 C 1.54450 * 110.32059 * 181.41738 * 9 7 2 12 12 O 1.44833 * 102.89788 * 140.79971 * 11 9 7 13 13 C 1.44385 * 103.23367 * 323.38819 * 12 11 9 14 14 H 1.09005 * 110.11080 * 280.04157 * 13 12 11 15 15 C 1.50704 * 110.11242 * 158.39947 * 13 12 11 16 16 C 1.38648 * 120.78762 * 241.16933 * 15 13 12 17 17 C 1.38208 * 119.16138 * 179.75383 * 16 15 13 18 18 N 1.31871 * 120.76035 * 0.53726 * 17 16 15 19 19 C 1.31868 * 121.72817 * 359.74000 * 18 17 16 20 20 C 1.38204 * 120.76638 * 359.97438 * 19 18 17 21 21 O 1.43888 * 110.32233 * 297.18295 * 9 7 2 22 22 H 0.97001 * 120.00053 * 359.97438 * 1 2 3 23 23 H 1.08999 * 110.72906 * 259.15442 * 11 9 7 24 24 H 1.09010 * 110.73082 * 22.26835 * 11 9 7 25 25 H 1.07999 * 120.41842 * 0.02562 * 16 15 13 26 26 H 1.07998 * 119.61841 * 180.29390 * 17 16 15 27 27 H 1.07998 * 119.61749 * 179.97438 * 19 18 17 28 28 H 1.07996 * 120.42247 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6098 -2.5652 -0.8795 11 6 2.2369 -3.6876 0.0346 12 8 1.5825 -4.6241 0.9248 13 6 0.9718 -3.7681 1.9142 14 1 1.7144 -3.4539 2.6477 15 6 -0.1593 -4.4918 2.5983 16 6 -1.4576 -4.0108 2.5240 17 6 -2.4701 -4.7041 3.1599 18 7 -2.2107 -5.8040 3.8395 19 6 -0.9876 -6.2873 3.9362 20 6 0.0745 -5.6512 3.3219 21 8 0.4679 -2.6240 1.2000 22 1 -0.4850 0.8401 0.0004 23 1 2.3566 -4.1191 -0.9591 24 1 3.2011 -3.3773 0.4376 25 1 -1.6755 -3.1082 1.9725 26 1 -3.4847 -4.3386 3.1028 27 1 -0.8138 -7.1907 4.5020 28 1 1.0739 -6.0522 3.4044 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058521189.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:42 Heat of formation + Delta-G solvation = -53.316320 kcal Electronic energy + Delta-G solvation = -14726.816104 eV Core-core repulsion = 12129.036269 eV Total energy + Delta-G solvation = -2597.779835 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.01749 -38.83839 -34.03840 -33.15042 -32.20580 -30.86422 -29.03548 -25.48630 -24.45632 -23.12064 -21.42590 -21.04271 -17.03507 -16.89410 -16.29858 -15.38902 -15.23862 -14.95240 -14.80471 -14.41476 -13.41541 -13.34297 -13.18786 -12.41951 -12.28311 -11.91506 -11.50040 -11.06103 -10.98922 -10.65238 -10.41313 -9.73712 -9.48905 -9.27474 -9.14337 -8.84583 -8.71283 -8.28168 -6.17649 -4.34282 1.42840 1.51374 3.21231 3.28814 3.31187 4.04636 4.28649 4.46912 4.60798 4.70288 5.15952 5.27326 5.42602 5.52171 5.63076 5.82392 5.92113 5.98663 6.00642 6.17224 6.23598 6.38036 6.67935 6.76275 7.00715 7.33488 7.69025 8.01166 8.19327 8.22898 8.75736 9.39322 10.89326 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.043901 B = 0.007793 C = 0.006992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.645369 B = 3592.301908 C = 4003.634051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.082 3.918 3 Si 0.896 3.104 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.553 4.553 8 H 0.065 0.935 9 C 0.183 3.817 10 H 0.054 0.946 11 C 0.021 3.979 12 O -0.392 6.392 13 C 0.262 3.738 14 H 0.073 0.927 15 C -0.041 4.041 16 C -0.132 4.132 17 C 0.086 3.914 18 N -0.490 5.490 19 C 0.084 3.916 20 C -0.154 4.154 21 O -0.359 6.359 22 H 0.264 0.736 23 H 0.088 0.912 24 H 0.066 0.934 25 H 0.152 0.848 26 H 0.155 0.845 27 H 0.152 0.848 28 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.174 -7.370 4.312 8.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.125 4.125 3 Si 0.723 3.277 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.590 4.590 8 H 0.083 0.917 9 C 0.128 3.872 10 H 0.072 0.928 11 C -0.055 4.055 12 O -0.313 6.313 13 C 0.166 3.834 14 H 0.090 0.910 15 C -0.049 4.049 16 C -0.151 4.151 17 C -0.070 4.070 18 N -0.200 5.200 19 C -0.073 4.073 20 C -0.174 4.174 21 O -0.280 6.280 22 H 0.074 0.926 23 H 0.106 0.894 24 H 0.084 0.916 25 H 0.170 0.830 26 H 0.172 0.828 27 H 0.170 0.830 28 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.856 -7.792 4.767 9.175 hybrid contribution 1.402 1.471 -0.462 2.084 sum 0.546 -6.321 4.305 7.667 Atomic orbital electron populations 1.70016 1.06121 1.27035 1.46390 1.25051 0.94799 0.99466 0.93206 0.86553 0.79949 0.82943 0.78286 1.20344 1.20939 1.19674 1.21237 0.92871 0.90205 1.54735 0.91705 1.21121 0.88397 0.92598 0.85128 0.92829 1.24467 0.97472 0.89932 0.93657 1.89288 1.70111 1.30930 1.40989 1.22692 0.89071 0.81387 0.90294 0.91004 1.20381 0.95109 0.94391 0.95051 1.22232 0.92345 1.01680 0.98862 1.22750 0.99603 0.91094 0.93566 1.67598 1.22989 1.12681 1.16729 1.22597 0.87927 0.99169 0.97601 1.21917 1.01038 0.95953 0.98508 1.89218 1.58825 1.43292 1.36625 0.92605 0.89379 0.91608 0.83042 0.82781 0.83044 0.84913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.49 12.99 55.43 0.72 -23.77 15 2 C 0.08 2.22 5.42 -17.82 -0.10 2.12 15 3 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 15 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 6 H -0.27 -6.14 7.11 56.52 0.40 -5.73 15 7 C -0.55 -14.76 8.78 -34.44 -0.30 -15.06 15 8 H 0.06 1.66 7.55 -52.49 -0.40 1.26 15 9 C 0.18 4.56 3.54 -27.12 -0.10 4.46 15 10 H 0.05 1.43 8.14 -51.93 -0.42 1.01 15 11 C 0.02 0.43 7.35 37.92 0.28 0.71 15 12 O -0.39 -8.18 11.45 -59.27 -0.68 -8.85 15 13 C 0.26 5.49 4.22 36.01 0.15 5.64 15 14 H 0.07 1.46 8.14 -51.93 -0.42 1.04 15 15 C -0.04 -0.76 5.61 -104.32 -0.59 -1.35 15 16 C -0.13 -2.39 9.46 -39.44 -0.37 -2.77 15 17 C 0.09 1.38 11.18 -17.55 -0.20 1.18 15 18 N -0.49 -7.90 10.36 -13.25 -0.14 -8.03 15 19 C 0.08 1.22 11.18 -17.55 -0.20 1.02 15 20 C -0.15 -2.42 9.78 -39.44 -0.39 -2.80 15 21 O -0.36 -8.99 9.20 -59.27 -0.55 -9.54 15 22 H 0.26 7.09 8.31 -40.82 -0.34 6.75 15 23 H 0.09 1.61 8.14 -51.93 -0.42 1.19 15 24 H 0.07 1.30 7.69 -51.92 -0.40 0.90 15 25 H 0.15 2.98 7.15 -52.49 -0.38 2.60 15 26 H 0.15 2.00 8.06 -52.49 -0.42 1.58 15 27 H 0.15 1.66 8.06 -52.49 -0.42 1.24 15 28 H 0.13 1.80 8.06 -52.49 -0.42 1.38 15 LS Contribution 250.69 15.07 3.78 3.78 Total: -1.00 -29.94 250.69 -6.53 -36.47 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -2.84 Total: 1.28 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -1.80 Total: -6.84 kcal Atomic # 7 Polarization: -32.38 SS G_CDS: 0.58 Total: -31.80 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -1.22 Total: -18.39 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -29.94 -6.53 -36.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058521189.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.847 kcal (2) G-P(sol) polarization free energy of solvation -29.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds