Wall clock time and date at job start Mon Mar 30 2020 03:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 120.00035 * 2 1 4 4 H 1.48494 * 109.47149 * 270.00118 * 3 2 1 5 5 H 1.48501 * 109.46926 * 29.99784 * 3 2 1 6 6 H 1.48498 * 109.47229 * 149.99677 * 3 2 1 7 7 C 1.37873 * 120.00284 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00524 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99796 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.28173 * 59.30126 * 9 7 2 11 11 C 1.54450 * 110.32059 * 181.41738 * 9 7 2 12 12 O 1.44833 * 102.89788 * 140.79971 * 11 9 7 13 13 C 1.44385 * 103.23367 * 323.38819 * 12 11 9 14 14 H 1.09005 * 110.11080 * 280.04157 * 13 12 11 15 15 C 1.50704 * 110.11242 * 158.39947 * 13 12 11 16 16 C 1.38648 * 120.78762 * 241.16933 * 15 13 12 17 17 C 1.38208 * 119.16138 * 179.75383 * 16 15 13 18 18 N 1.31871 * 120.76035 * 0.53726 * 17 16 15 19 19 C 1.31868 * 121.72817 * 359.74000 * 18 17 16 20 20 C 1.38204 * 120.76638 * 359.97438 * 19 18 17 21 21 O 1.43888 * 110.32233 * 297.18295 * 9 7 2 22 22 H 0.97001 * 120.00053 * 359.97438 * 1 2 3 23 23 H 1.08999 * 110.72906 * 259.15442 * 11 9 7 24 24 H 1.09010 * 110.73082 * 22.26835 * 11 9 7 25 25 H 1.07999 * 120.41842 * 0.02562 * 16 15 13 26 26 H 1.07998 * 119.61841 * 180.29390 * 17 16 15 27 27 H 1.07998 * 119.61749 * 179.97438 * 19 18 17 28 28 H 1.07996 * 120.42247 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6098 -2.5652 -0.8795 11 6 2.2369 -3.6876 0.0346 12 8 1.5825 -4.6241 0.9248 13 6 0.9718 -3.7681 1.9142 14 1 1.7144 -3.4539 2.6477 15 6 -0.1593 -4.4918 2.5983 16 6 -1.4576 -4.0108 2.5240 17 6 -2.4701 -4.7041 3.1599 18 7 -2.2107 -5.8040 3.8395 19 6 -0.9876 -6.2873 3.9362 20 6 0.0745 -5.6512 3.3219 21 8 0.4679 -2.6240 1.2000 22 1 -0.4850 0.8401 0.0004 23 1 2.3566 -4.1191 -0.9591 24 1 3.2011 -3.3773 0.4376 25 1 -1.6755 -3.1082 1.9725 26 1 -3.4847 -4.3386 3.1028 27 1 -0.8138 -7.1907 4.5020 28 1 1.0739 -6.0522 3.4044 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058521189.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:42 Heat of formation + Delta-G solvation = -73.154119 kcal Electronic energy + Delta-G solvation = -14727.676335 eV Core-core repulsion = 12129.036269 eV Total energy + Delta-G solvation = -2598.640066 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.46799 -40.40032 -35.86650 -34.85513 -33.89476 -32.12281 -30.84242 -27.24390 -26.17173 -24.41439 -23.05307 -22.68678 -18.89956 -18.51272 -17.86372 -17.06191 -16.58277 -16.44119 -16.39795 -16.17774 -15.06020 -14.71167 -14.59050 -14.18941 -14.01584 -13.58482 -13.15988 -12.80117 -12.58983 -12.44438 -12.30354 -11.48408 -11.14088 -10.77536 -10.70455 -10.52869 -10.16329 -10.08284 -8.22287 -6.46239 0.14612 0.20350 1.41101 1.42081 1.52755 2.36716 2.67688 2.89165 2.97434 3.29299 3.58059 3.93721 3.99607 4.14854 4.17628 4.22667 4.31208 4.37191 4.63145 4.68286 4.90133 4.90949 5.05569 5.31692 5.44845 5.62185 5.74321 6.00491 6.38517 6.74548 6.96149 7.31820 8.85469 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.043901 B = 0.007793 C = 0.006992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.645369 B = 3592.301908 C = 4003.634051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.028 3.972 3 Si 0.966 3.034 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.569 4.569 8 H 0.073 0.927 9 C 0.172 3.828 10 H 0.022 0.978 11 C 0.031 3.969 12 O -0.390 6.390 13 C 0.258 3.742 14 H 0.078 0.922 15 C -0.064 4.064 16 C -0.153 4.153 17 C 0.092 3.908 18 N -0.499 5.499 19 C 0.095 3.905 20 C -0.150 4.150 21 O -0.386 6.386 22 H 0.265 0.735 23 H 0.113 0.887 24 H 0.079 0.921 25 H 0.124 0.876 26 H 0.179 0.821 27 H 0.195 0.805 28 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.135 -8.423 5.292 10.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.176 4.176 3 Si 0.790 3.210 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.187 1.187 7 C -0.606 4.606 8 H 0.092 0.908 9 C 0.117 3.883 10 H 0.040 0.960 11 C -0.045 4.045 12 O -0.311 6.311 13 C 0.163 3.837 14 H 0.095 0.905 15 C -0.072 4.072 16 C -0.173 4.173 17 C -0.064 4.064 18 N -0.208 5.208 19 C -0.062 4.062 20 C -0.170 4.170 21 O -0.307 6.307 22 H 0.073 0.927 23 H 0.131 0.869 24 H 0.097 0.903 25 H 0.142 0.858 26 H 0.197 0.803 27 H 0.212 0.788 28 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.116 -8.859 5.744 10.559 hybrid contribution 1.082 1.702 -0.735 2.146 sum 1.198 -7.157 5.009 8.818 Atomic orbital electron populations 1.70158 1.07824 1.27859 1.47823 1.25947 0.95584 1.03231 0.92798 0.85461 0.78676 0.78262 0.78633 1.19379 1.21044 1.18695 1.21636 0.93465 0.91190 1.54293 0.90850 1.21048 0.88755 0.94177 0.84319 0.95998 1.24407 0.96583 0.88395 0.95118 1.89273 1.70147 1.30751 1.40973 1.22859 0.90191 0.80696 0.89982 0.90472 1.20377 0.94416 0.95942 0.96499 1.22098 0.93284 1.01626 1.00301 1.23044 1.00106 0.90707 0.92518 1.67729 1.23887 1.12497 1.16731 1.23286 0.86856 0.99716 0.96354 1.22166 1.02714 0.94598 0.97493 1.89161 1.59422 1.45253 1.36876 0.92656 0.86942 0.90329 0.85764 0.80350 0.78804 0.82548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.78 12.99 21.45 0.28 -52.50 15 2 C 0.03 1.51 5.42 84.65 0.46 1.96 15 3 Si 0.97 42.29 29.54 68.60 2.03 44.32 15 4 H -0.27 -11.28 7.11 99.48 0.71 -10.58 15 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 15 6 H -0.26 -11.01 7.11 99.48 0.71 -10.30 15 7 C -0.57 -30.62 8.78 25.60 0.22 -30.40 15 8 H 0.07 3.72 7.55 -2.91 -0.02 3.69 15 9 C 0.17 8.82 3.54 30.34 0.11 8.93 15 10 H 0.02 1.24 8.14 -2.39 -0.02 1.22 15 11 C 0.03 1.26 7.35 72.47 0.53 1.79 15 12 O -0.39 -15.95 11.45 -126.00 -1.44 -17.39 15 13 C 0.26 10.87 4.22 71.24 0.30 11.17 15 14 H 0.08 3.12 8.14 -2.38 -0.02 3.10 15 15 C -0.06 -2.36 5.61 -19.67 -0.11 -2.47 15 16 C -0.15 -5.67 9.46 22.36 0.21 -5.46 15 17 C 0.09 2.85 11.18 84.68 0.95 3.79 15 18 N -0.50 -14.83 10.36 -195.84 -2.03 -16.86 15 19 C 0.09 2.43 11.18 84.68 0.95 3.38 15 20 C -0.15 -4.34 9.78 22.36 0.22 -4.12 15 21 O -0.39 -20.00 9.20 -126.00 -1.16 -21.16 15 22 H 0.26 14.62 8.31 -92.71 -0.77 13.85 15 23 H 0.11 3.96 8.14 -2.39 -0.02 3.94 15 24 H 0.08 2.98 7.69 -2.38 -0.02 2.97 15 25 H 0.12 5.23 7.15 -2.91 -0.02 5.21 15 26 H 0.18 4.43 8.06 -2.91 -0.02 4.41 15 27 H 0.20 3.28 8.06 -2.91 -0.02 3.26 15 28 H 0.16 3.72 8.06 -2.91 -0.02 3.70 15 Total: -1.00 -64.94 250.69 2.67 -62.26 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 1.16 Total: 12.76 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: 3.84 Total: -11.43 kcal Atomic # 7 Polarization: -67.61 SS G_CDS: -1.75 Total: -69.36 kcal Atomic # 8 Polarization: -35.95 SS G_CDS: -2.60 Total: -38.55 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -64.94 2.67 -62.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058521189.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.890 kcal (2) G-P(sol) polarization free energy of solvation -64.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds