Wall clock time and date at job start Mon Mar 30 2020 02:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00237 * 2 1 4 4 H 1.48491 * 109.47441 * 270.00717 * 3 2 1 5 5 H 1.48499 * 109.46573 * 30.00814 * 3 2 1 6 6 H 1.48504 * 109.46932 * 150.00278 * 3 2 1 7 7 C 1.37880 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00114 * 359.97438 * 7 2 1 9 9 S 1.76203 * 120.00029 * 179.97438 * 7 2 1 10 10 O 1.42097 * 106.40057 * 66.45702 * 9 7 2 11 11 O 1.42097 * 106.39984 * 293.53322 * 9 7 2 12 12 N 1.65596 * 107.21652 * 179.97438 * 9 7 2 13 13 C 1.47425 * 125.64997 * 270.03857 * 12 9 7 14 14 C 1.54915 * 104.83334 * 204.09565 * 13 12 9 15 15 C 1.55165 * 101.57980 * 322.99105 * 14 13 12 16 16 H 1.08993 * 110.71917 * 277.13865 * 15 14 13 17 17 O 1.42893 * 110.71605 * 153.86634 * 15 14 13 18 18 C 1.47022 * 125.64668 * 90.00099 * 12 9 7 19 19 H 0.96994 * 119.99866 * 359.97438 * 1 2 3 20 20 H 1.08997 * 110.36855 * 322.93307 * 13 12 9 21 21 H 1.08997 * 110.36655 * 85.26180 * 13 12 9 22 22 H 1.08995 * 111.00392 * 204.91661 * 14 13 12 23 23 H 1.09001 * 111.00387 * 81.05917 * 14 13 12 24 24 H 0.96701 * 114.00795 * 66.48111 * 17 15 14 25 25 H 1.08997 * 109.88723 * 59.55850 * 18 12 9 26 26 H 1.08998 * 109.88661 * 298.38831 * 18 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6525 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 16 3.7666 -1.1941 -0.0012 10 8 4.1683 -0.6499 1.2484 11 8 4.1673 -0.6496 -1.2510 12 7 4.2567 -2.7759 -0.0011 13 6 4.5107 -3.5966 1.1970 14 6 5.4920 -4.6976 0.7228 15 6 4.9686 -4.9855 -0.7093 16 1 4.1293 -5.6802 -0.6806 17 8 6.0169 -5.4908 -1.5385 18 6 4.5098 -3.5946 -1.1957 19 1 -0.4850 0.8400 0.0004 20 1 4.9681 -2.9927 1.9806 21 1 3.5830 -4.0437 1.5542 22 1 5.4174 -5.5846 1.3517 23 1 6.5155 -4.3238 0.6968 24 1 6.3411 -6.3629 -1.2752 25 1 5.2927 -3.1365 -1.8000 26 1 3.5950 -3.6897 -1.7806 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061712506.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:06 Heat of formation + Delta-G solvation = -124.502129 kcal Electronic energy + Delta-G solvation = -13827.362992 eV Core-core repulsion = 11226.107165 eV Total energy + Delta-G solvation = -2601.255826 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 221.055 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.59480 -35.66856 -35.41640 -34.44458 -33.02787 -29.76488 -28.18138 -26.39205 -22.09711 -21.04195 -18.76654 -17.91912 -17.22128 -16.77008 -15.43095 -14.85766 -14.33550 -13.98762 -13.80454 -13.46423 -13.10007 -12.82965 -12.45179 -11.87402 -11.45386 -11.39386 -11.21068 -10.82339 -10.66031 -10.62405 -10.47366 -9.94914 -9.81464 -9.21034 -9.14249 -8.25613 -6.80682 -5.34418 1.94404 3.07075 3.18182 3.26819 3.95105 4.04053 4.28737 4.58827 4.74137 4.84889 5.12831 5.41808 5.46291 5.65239 5.80505 5.93721 5.96115 6.16910 6.19196 6.26608 6.65662 7.18828 7.48638 7.61718 8.21366 8.70060 10.31797 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.054288 B = 0.010043 C = 0.009884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.645343 B = 2787.473671 C = 2832.291843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.152 3.848 3 Si 0.802 3.198 4 H -0.246 1.246 5 H -0.254 1.254 6 H -0.220 1.220 7 C -1.016 5.016 8 H 0.121 0.879 9 S 2.692 3.308 10 O -1.003 7.003 11 O -1.004 7.004 12 N -1.012 6.012 13 C 0.121 3.879 14 C -0.164 4.164 15 C 0.093 3.907 16 H 0.074 0.926 17 O -0.561 6.561 18 C 0.131 3.869 19 H 0.281 0.719 20 H 0.082 0.918 21 H 0.066 0.934 22 H 0.079 0.921 23 H 0.082 0.918 24 H 0.378 0.622 25 H 0.076 0.924 26 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.716 -9.712 0.966 12.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.067 4.067 3 Si 0.621 3.379 4 H -0.169 1.169 5 H -0.178 1.178 6 H -0.142 1.142 7 C -1.150 5.150 8 H 0.139 0.861 9 S 2.795 3.205 10 O -0.993 6.993 11 O -0.995 6.995 12 N -0.849 5.849 13 C -0.005 4.005 14 C -0.203 4.203 15 C 0.033 3.967 16 H 0.091 0.909 17 O -0.366 6.366 18 C 0.005 3.995 19 H 0.091 0.909 20 H 0.101 0.899 21 H 0.084 0.916 22 H 0.098 0.902 23 H 0.100 0.900 24 H 0.224 0.776 25 H 0.094 0.906 26 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.016 -8.237 0.656 11.512 hybrid contribution -0.522 -0.131 0.331 0.631 sum 7.494 -8.368 0.987 11.276 Atomic orbital electron populations 1.69988 1.06581 1.29063 1.39632 1.24438 0.94806 0.98834 0.88613 0.87865 0.83592 0.84484 0.81919 1.16925 1.17812 1.14180 1.30530 1.15661 1.02160 1.66651 0.86120 1.00999 0.77110 0.69172 0.73178 1.93454 1.85425 1.75108 1.45332 1.93406 1.85364 1.75309 1.45380 1.58635 1.85137 1.30100 1.10998 1.21815 0.98107 0.92154 0.88446 1.23494 1.00598 0.99264 0.96918 1.22866 0.89364 0.95381 0.89114 0.90855 1.86507 1.54928 1.38605 1.56520 1.21337 1.01060 0.89324 0.87829 0.90878 0.89933 0.91597 0.90209 0.89964 0.77560 0.90552 0.90860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -24.02 13.96 55.43 0.77 -23.25 15 2 C 0.15 4.44 5.47 -17.82 -0.10 4.34 15 3 Si 0.80 20.81 26.54 -169.99 -4.51 16.30 15 4 H -0.25 -6.23 7.11 56.52 0.40 -5.83 15 5 H -0.25 -6.02 7.11 56.52 0.40 -5.62 15 6 H -0.22 -5.80 5.61 56.52 0.32 -5.48 15 7 C -1.02 -28.83 10.29 30.60 0.31 -28.51 15 8 H 0.12 3.45 8.06 -52.49 -0.42 3.03 15 9 S 2.69 69.23 4.43 -107.50 -0.48 68.75 15 10 O -1.00 -27.22 15.34 -57.17 -0.88 -28.10 15 11 O -1.00 -27.61 16.42 -57.17 -0.94 -28.54 15 12 N -1.01 -20.55 3.70 -111.42 -0.41 -20.96 15 13 C 0.12 1.96 7.10 -2.53 -0.02 1.94 15 14 C -0.16 -2.01 6.81 -24.57 -0.17 -2.18 15 15 C 0.09 1.22 4.33 -24.89 -0.11 1.11 15 16 H 0.07 0.82 8.14 -51.93 -0.42 0.40 15 17 O -0.56 -6.78 13.39 -35.23 -0.47 -7.26 15 18 C 0.13 2.30 6.77 -3.06 -0.02 2.28 15 19 H 0.28 7.41 8.31 -40.82 -0.34 7.07 15 20 H 0.08 1.35 7.78 -51.93 -0.40 0.95 15 21 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15 22 H 0.08 0.72 8.14 -51.93 -0.42 0.30 15 23 H 0.08 1.02 8.14 -51.93 -0.42 0.60 15 24 H 0.38 2.57 9.12 45.56 0.42 2.99 15 25 H 0.08 1.40 8.06 -51.93 -0.42 0.98 15 26 H 0.07 1.26 8.14 -51.93 -0.42 0.84 15 LS Contribution 236.39 15.07 3.56 3.56 Total: -1.00 -34.11 236.39 -5.61 -39.72 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -2.16 Total: 0.79 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: -0.10 Total: -21.01 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: 0.36 Total: -44.21 kcal Atomic # 8 Polarization: -61.61 SS G_CDS: -2.29 Total: -63.90 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.51 Total: 16.30 kcal Atomic # 16 Polarization: 69.23 SS G_CDS: -0.48 Total: 68.75 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -34.11 -5.61 -39.72 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061712506.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.781 kcal (2) G-P(sol) polarization free energy of solvation -34.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds