Wall clock time and date at job start Mon Mar 30 2020 02:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00237 * 2 1 4 4 H 1.48491 * 109.47441 * 270.00717 * 3 2 1 5 5 H 1.48499 * 109.46573 * 30.00814 * 3 2 1 6 6 H 1.48504 * 109.46932 * 150.00278 * 3 2 1 7 7 C 1.37880 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00114 * 359.97438 * 7 2 1 9 9 S 1.76203 * 120.00029 * 179.97438 * 7 2 1 10 10 O 1.42097 * 106.40057 * 66.45702 * 9 7 2 11 11 O 1.42097 * 106.39984 * 293.53322 * 9 7 2 12 12 N 1.65596 * 107.21652 * 179.97438 * 9 7 2 13 13 C 1.47425 * 125.64997 * 270.03857 * 12 9 7 14 14 C 1.54915 * 104.83334 * 204.09565 * 13 12 9 15 15 C 1.55165 * 101.57980 * 322.99105 * 14 13 12 16 16 H 1.08993 * 110.71917 * 277.13865 * 15 14 13 17 17 O 1.42893 * 110.71605 * 153.86634 * 15 14 13 18 18 C 1.47022 * 125.64668 * 90.00099 * 12 9 7 19 19 H 0.96994 * 119.99866 * 359.97438 * 1 2 3 20 20 H 1.08997 * 110.36855 * 322.93307 * 13 12 9 21 21 H 1.08997 * 110.36655 * 85.26180 * 13 12 9 22 22 H 1.08995 * 111.00392 * 204.91661 * 14 13 12 23 23 H 1.09001 * 111.00387 * 81.05917 * 14 13 12 24 24 H 0.96701 * 114.00795 * 66.48111 * 17 15 14 25 25 H 1.08997 * 109.88723 * 59.55850 * 18 12 9 26 26 H 1.08998 * 109.88661 * 298.38831 * 18 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6525 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 16 3.7666 -1.1941 -0.0012 10 8 4.1683 -0.6499 1.2484 11 8 4.1673 -0.6496 -1.2510 12 7 4.2567 -2.7759 -0.0011 13 6 4.5107 -3.5966 1.1970 14 6 5.4920 -4.6976 0.7228 15 6 4.9686 -4.9855 -0.7093 16 1 4.1293 -5.6802 -0.6806 17 8 6.0169 -5.4908 -1.5385 18 6 4.5098 -3.5946 -1.1957 19 1 -0.4850 0.8400 0.0004 20 1 4.9681 -2.9927 1.9806 21 1 3.5830 -4.0437 1.5542 22 1 5.4174 -5.5846 1.3517 23 1 6.5155 -4.3238 0.6968 24 1 6.3411 -6.3629 -1.2752 25 1 5.2927 -3.1365 -1.8000 26 1 3.5950 -3.6897 -1.7806 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061712506.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:06 Heat of formation + Delta-G solvation = -154.975091 kcal Electronic energy + Delta-G solvation = -13828.684398 eV Core-core repulsion = 11226.107165 eV Total energy + Delta-G solvation = -2602.577233 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 221.055 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.76762 -37.76867 -36.56245 -36.53381 -35.22102 -31.02344 -29.44851 -28.59014 -23.46808 -22.14960 -20.75409 -19.52944 -18.80850 -18.40941 -17.33085 -16.61108 -15.89636 -15.48416 -15.25160 -14.98410 -14.94452 -14.52699 -13.84766 -13.51118 -13.42691 -13.03580 -12.80484 -12.67777 -12.52918 -12.38794 -11.84496 -11.66348 -11.37070 -11.25151 -10.85343 -9.86022 -9.00247 -7.56774 -0.00172 1.02284 1.12015 1.18932 1.86549 2.35776 2.40571 3.19460 3.32506 3.61014 3.70303 4.11765 4.18653 4.33922 4.58609 4.61934 4.84400 4.87634 4.97763 5.11143 5.25837 5.38437 5.63127 5.97534 6.49258 6.98131 8.17652 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.054288 B = 0.010043 C = 0.009884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.645343 B = 2787.473671 C = 2832.291843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.108 3.892 3 Si 0.824 3.176 4 H -0.239 1.239 5 H -0.215 1.215 6 H -0.229 1.229 7 C -1.038 5.038 8 H 0.105 0.895 9 S 2.712 3.288 10 O -1.021 7.021 11 O -1.028 7.028 12 N -1.015 6.015 13 C 0.102 3.898 14 C -0.147 4.147 15 C 0.107 3.893 16 H 0.101 0.899 17 O -0.574 6.574 18 C 0.113 3.887 19 H 0.292 0.708 20 H 0.076 0.924 21 H 0.079 0.921 22 H 0.125 0.875 23 H 0.081 0.919 24 H 0.403 0.597 25 H 0.062 0.938 26 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.672 -10.971 1.403 14.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.109 4.109 3 Si 0.641 3.359 4 H -0.163 1.163 5 H -0.137 1.137 6 H -0.152 1.152 7 C -1.171 5.171 8 H 0.124 0.876 9 S 2.814 3.186 10 O -1.011 7.011 11 O -1.018 7.018 12 N -0.856 5.856 13 C -0.022 4.022 14 C -0.186 4.186 15 C 0.046 3.954 16 H 0.118 0.882 17 O -0.383 6.383 18 C -0.013 4.013 19 H 0.103 0.897 20 H 0.095 0.905 21 H 0.097 0.903 22 H 0.143 0.857 23 H 0.099 0.901 24 H 0.255 0.745 25 H 0.080 0.920 26 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.947 -9.502 1.104 13.098 hybrid contribution -0.796 0.129 0.176 0.825 sum 8.151 -9.373 1.280 12.487 Atomic orbital electron populations 1.70005 1.07403 1.30586 1.40250 1.25178 0.95680 1.01474 0.88567 0.87500 0.82911 0.82803 0.82668 1.16273 1.13706 1.15196 1.31023 1.17911 1.01694 1.66446 0.87649 1.00096 0.75705 0.70524 0.72232 1.93418 1.85129 1.76726 1.45862 1.93365 1.85139 1.77077 1.46218 1.58212 1.84407 1.29222 1.13727 1.22256 1.00104 0.92870 0.86994 1.23483 0.99084 0.99237 0.96785 1.22689 0.90627 0.93039 0.89018 0.88175 1.86451 1.54660 1.40658 1.56543 1.21634 1.00809 0.91921 0.86921 0.89707 0.90539 0.90261 0.85723 0.90081 0.74547 0.91962 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.97 13.96 21.45 0.30 -49.67 15 2 C 0.11 6.32 5.47 84.65 0.46 6.78 15 3 Si 0.82 41.77 26.54 68.60 1.82 43.59 15 4 H -0.24 -11.80 7.11 99.48 0.71 -11.09 15 5 H -0.22 -9.50 7.11 99.48 0.71 -8.79 15 6 H -0.23 -11.96 5.61 99.48 0.56 -11.40 15 7 C -1.04 -59.92 10.29 67.73 0.70 -59.22 15 8 H 0.11 6.20 8.06 -2.91 -0.02 6.18 15 9 S 2.71 140.39 4.43 -56.49 -0.25 140.14 15 10 O -1.02 -55.55 15.34 -128.00 -1.96 -57.52 15 11 O -1.03 -57.03 16.42 -128.00 -2.10 -59.13 15 12 N -1.02 -40.68 3.70 -506.42 -1.87 -42.56 15 13 C 0.10 3.12 7.10 86.86 0.62 3.74 15 14 C -0.15 -3.05 6.81 31.99 0.22 -2.83 15 15 C 0.11 2.45 4.33 31.79 0.14 2.59 15 16 H 0.10 1.82 8.14 -2.39 -0.02 1.80 15 17 O -0.57 -11.92 13.39 -148.98 -1.99 -13.92 15 18 C 0.11 3.87 6.77 86.73 0.59 4.46 15 19 H 0.29 15.37 8.31 -92.71 -0.77 14.60 15 20 H 0.08 2.41 7.78 -2.39 -0.02 2.39 15 21 H 0.08 2.19 8.14 -2.39 -0.02 2.17 15 22 H 0.12 1.55 8.14 -2.39 -0.02 1.53 15 23 H 0.08 1.73 8.14 -2.39 -0.02 1.72 15 24 H 0.40 3.74 9.12 -74.06 -0.68 3.07 15 25 H 0.06 2.27 8.06 -2.39 -0.02 2.26 15 26 H 0.07 2.38 8.14 -2.39 -0.02 2.36 15 Total: -1.00 -73.78 236.39 -2.98 -76.76 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: 0.37 Total: 6.78 kcal Atomic # 6 Polarization: -47.20 SS G_CDS: 2.72 Total: -44.48 kcal Atomic # 7 Polarization: -90.65 SS G_CDS: -1.57 Total: -92.23 kcal Atomic # 8 Polarization: -124.51 SS G_CDS: -6.06 Total: -130.57 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 1.82 Total: 43.59 kcal Atomic # 16 Polarization: 140.39 SS G_CDS: -0.25 Total: 140.14 kcal Total: -73.78 -2.98 -76.76 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061712506.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.215 kcal (2) G-P(sol) polarization free energy of solvation -73.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds