Wall clock time and date at job start Mon Mar 30 2020 02:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86803 * 120.00074 * 2 1 4 4 H 1.48490 * 109.47275 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47238 * 300.00453 * 3 2 1 6 6 H 1.48504 * 109.46889 * 60.00103 * 3 2 1 7 7 C 1.38651 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99864 * 179.97438 * 7 2 1 9 9 O 1.34827 * 120.00088 * 359.97438 * 7 2 1 10 10 C 1.35747 * 116.99961 * 185.05511 * 9 7 2 11 11 C 1.38934 * 119.89691 * 174.42074 * 10 9 7 12 12 C 1.38208 * 119.70132 * 179.82405 * 11 10 9 13 13 C 1.37834 * 120.06380 * 0.06553 * 12 11 10 14 14 C 1.38977 * 120.89629 * 0.25114 * 13 12 11 15 15 C 1.38564 * 119.90114 * 354.44901 * 10 9 7 16 16 O 1.36143 * 111.23472 * 179.38982 * 14 13 12 17 17 C 1.43757 * 109.28710 * 18.65178 * 16 14 13 18 18 C 1.51664 * 132.09727 * 180.29592 * 13 12 11 19 19 H 1.09009 * 110.94253 * 282.42552 * 18 13 12 20 20 N 1.46897 * 110.94365 * 46.07548 * 18 13 12 21 21 H 0.97004 * 119.99944 * 0.02562 * 1 2 3 22 22 H 1.08005 * 120.15496 * 359.86516 * 11 10 9 23 23 H 1.07998 * 119.97525 * 180.02562 * 12 11 10 24 24 H 1.08000 * 119.90370 * 0.02562 * 15 10 9 25 25 H 1.09004 * 110.73858 * 214.06759 * 17 16 14 26 26 H 1.08996 * 110.74728 * 90.72338 * 17 16 14 27 27 H 1.00903 * 111.00550 * 176.98493 * 20 18 13 28 28 H 1.00904 * 111.00494 * 300.94133 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7095 1.3464 0.0006 5 1 1.8908 2.3965 -1.2125 6 1 1.8908 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0700 -3.5045 0.1055 11 6 1.4328 -4.7329 0.2285 12 6 2.1854 -5.8875 0.3326 13 6 3.5618 -5.8183 0.3155 14 6 4.2136 -4.5963 0.1996 15 6 3.4539 -3.4355 0.0913 16 8 5.5656 -4.7550 0.2169 17 6 5.8872 -6.1226 -0.0876 18 6 4.6347 -6.8867 0.4030 19 1 4.7633 -7.2264 1.4308 20 7 4.3257 -8.0151 -0.4853 21 1 -0.4850 0.8401 -0.0004 22 1 0.3541 -4.7856 0.2422 23 1 1.6946 -6.8447 0.4280 24 1 3.9443 -2.4780 -0.0037 25 1 6.7736 -6.4420 0.4604 26 1 6.0258 -6.2570 -1.1604 27 1 5.0628 -8.7039 -0.4648 28 1 3.4369 -8.4296 -0.2477 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062803745.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:33 Heat of formation + Delta-G solvation = -27.624472 kcal Electronic energy + Delta-G solvation = -14495.002430 eV Core-core repulsion = 11898.336677 eV Total energy + Delta-G solvation = -2596.665753 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.56098 -38.34144 -35.55365 -34.36647 -32.24312 -29.62550 -28.79637 -27.45446 -25.40660 -22.50305 -21.48255 -20.50124 -18.14818 -17.34541 -16.29359 -16.14176 -15.47614 -15.11484 -14.43626 -13.92133 -13.79512 -13.54408 -13.42688 -12.98748 -12.41470 -11.81538 -11.67239 -11.58266 -11.07301 -10.99376 -10.53395 -10.38640 -10.14626 -9.43548 -8.91822 -8.73432 -7.78534 -7.17060 -6.47327 -4.06425 2.16953 2.21324 3.13021 3.15195 3.21110 3.71590 3.96961 4.33145 4.59488 4.80699 5.00759 5.07562 5.24422 5.26083 5.57969 5.70139 5.80170 6.09343 6.23313 6.31432 6.63776 6.96345 7.03552 7.09479 7.18266 7.31418 7.38167 7.44347 7.86958 7.98516 8.98370 9.65258 10.70239 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.049518 B = 0.007174 C = 0.006340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.317380 B = 3902.023092 C = 4415.295482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.394 4.394 8 H 0.095 0.905 9 O -0.169 6.169 10 C 0.184 3.816 11 C -0.214 4.214 12 C -0.021 4.021 13 C -0.261 4.261 14 C 0.149 3.851 15 C -0.250 4.250 16 O -0.310 6.310 17 C 0.058 3.942 18 C 0.116 3.884 19 H 0.050 0.950 20 N -0.834 5.834 21 H 0.270 0.730 22 H 0.123 0.877 23 H 0.112 0.888 24 H 0.134 0.866 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.337 0.663 28 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.836 -10.991 0.944 13.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.164 4.164 3 Si 0.766 3.234 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.470 4.470 8 H 0.112 0.888 9 O -0.072 6.072 10 C 0.130 3.870 11 C -0.234 4.234 12 C -0.040 4.040 13 C -0.263 4.263 14 C 0.104 3.896 15 C -0.270 4.270 16 O -0.224 6.224 17 C -0.018 4.018 18 C 0.004 3.996 19 H 0.068 0.932 20 N -0.365 5.365 21 H 0.080 0.920 22 H 0.141 0.859 23 H 0.130 0.870 24 H 0.151 0.849 25 H 0.112 0.888 26 H 0.099 0.901 27 H 0.149 0.851 28 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.596 -10.048 0.384 12.602 hybrid contribution 0.514 0.028 0.846 0.990 sum 8.110 -10.019 1.230 12.949 Atomic orbital electron populations 1.70051 1.05982 1.27697 1.45760 1.25308 0.95858 0.98890 0.96340 0.85627 0.79275 0.80182 0.78270 1.18964 1.20074 1.20087 1.21443 0.92027 0.80692 1.52827 0.88752 1.84013 1.33959 1.11448 1.77734 1.18900 0.88942 0.88209 0.90998 1.20087 0.99599 0.89870 1.13827 1.19649 0.91074 0.96895 0.96359 1.19974 0.94167 0.93159 1.19045 1.19125 0.81747 0.94349 0.94384 1.20165 0.92787 0.97029 1.17067 1.86767 1.20355 1.29168 1.86133 1.23765 0.96951 0.79561 1.01488 1.21226 0.93496 0.90938 0.93890 0.93233 1.58674 1.07530 1.12682 1.57653 0.91980 0.85880 0.87027 0.84880 0.88781 0.90077 0.85127 0.84072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.19 13.67 55.48 0.76 -24.43 15 2 C 0.04 1.12 5.49 -17.52 -0.10 1.03 15 3 Si 0.94 20.71 29.55 -169.99 -5.02 15.69 15 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 15 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 15 6 H -0.28 -5.91 7.11 56.52 0.40 -5.51 15 7 C -0.39 -11.14 9.48 30.89 0.29 -10.85 15 8 H 0.10 2.51 5.19 -52.48 -0.27 2.24 15 9 O -0.17 -4.85 9.75 0.07 0.00 -4.85 15 10 C 0.18 4.57 6.64 -39.20 -0.26 4.31 15 11 C -0.21 -4.59 10.01 -39.33 -0.39 -4.98 15 12 C -0.02 -0.39 10.00 -39.74 -0.40 -0.78 15 13 C -0.26 -4.83 5.91 -104.02 -0.62 -5.45 15 14 C 0.15 3.12 7.03 -38.97 -0.27 2.85 15 15 C -0.25 -5.88 9.19 -39.12 -0.36 -6.24 15 16 O -0.31 -5.87 11.10 -20.19 -0.22 -6.09 15 17 C 0.06 0.82 7.73 38.05 0.29 1.11 15 18 C 0.12 1.63 4.26 -67.50 -0.29 1.35 15 19 H 0.05 0.65 8.14 -51.92 -0.42 0.23 15 20 N -0.83 -9.63 9.32 -4.48 -0.04 -9.67 15 21 H 0.27 7.22 8.31 -40.82 -0.34 6.88 15 22 H 0.12 2.48 8.06 -52.48 -0.42 2.06 15 23 H 0.11 1.64 8.06 -52.49 -0.42 1.22 15 24 H 0.13 3.17 5.60 -52.49 -0.29 2.88 15 25 H 0.09 1.01 8.14 -51.93 -0.42 0.58 15 26 H 0.08 1.11 8.10 -51.93 -0.42 0.69 15 27 H 0.34 2.88 9.08 -39.29 -0.36 2.52 15 28 H 0.35 3.61 9.03 -39.29 -0.35 3.26 15 LS Contribution 248.16 15.07 3.74 3.74 Total: -1.00 -31.54 248.16 -5.41 -36.95 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -2.52 Total: 6.31 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -2.10 Total: -17.65 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: 0.72 Total: -34.10 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: -0.22 Total: -10.94 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -31.54 -5.41 -36.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062803745.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.331 kcal (2) G-P(sol) polarization free energy of solvation -31.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds