Wall clock time and date at job start Mon Mar 30 2020 02:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86803 * 120.00074 * 2 1 4 4 H 1.48490 * 109.47275 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47238 * 300.00453 * 3 2 1 6 6 H 1.48504 * 109.46889 * 60.00103 * 3 2 1 7 7 C 1.38651 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99864 * 179.97438 * 7 2 1 9 9 O 1.34827 * 120.00088 * 359.97438 * 7 2 1 10 10 C 1.35747 * 116.99961 * 185.05511 * 9 7 2 11 11 C 1.38934 * 119.89691 * 174.42074 * 10 9 7 12 12 C 1.38208 * 119.70132 * 179.82405 * 11 10 9 13 13 C 1.37834 * 120.06380 * 0.06553 * 12 11 10 14 14 C 1.38977 * 120.89629 * 0.25114 * 13 12 11 15 15 C 1.38564 * 119.90114 * 354.44901 * 10 9 7 16 16 O 1.36143 * 111.23472 * 179.38982 * 14 13 12 17 17 C 1.43757 * 109.28710 * 18.65178 * 16 14 13 18 18 C 1.51664 * 132.09727 * 180.29592 * 13 12 11 19 19 H 1.09009 * 110.94253 * 282.42552 * 18 13 12 20 20 N 1.46897 * 110.94365 * 46.07548 * 18 13 12 21 21 H 0.97004 * 119.99944 * 0.02562 * 1 2 3 22 22 H 1.08005 * 120.15496 * 359.86516 * 11 10 9 23 23 H 1.07998 * 119.97525 * 180.02562 * 12 11 10 24 24 H 1.08000 * 119.90370 * 0.02562 * 15 10 9 25 25 H 1.09004 * 110.73858 * 214.06759 * 17 16 14 26 26 H 1.08996 * 110.74728 * 90.72338 * 17 16 14 27 27 H 1.00903 * 111.00550 * 176.98493 * 20 18 13 28 28 H 1.00904 * 111.00494 * 300.94133 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7095 1.3464 0.0006 5 1 1.8908 2.3965 -1.2125 6 1 1.8908 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0700 -3.5045 0.1055 11 6 1.4328 -4.7329 0.2285 12 6 2.1854 -5.8875 0.3326 13 6 3.5618 -5.8183 0.3155 14 6 4.2136 -4.5963 0.1996 15 6 3.4539 -3.4355 0.0913 16 8 5.5656 -4.7550 0.2169 17 6 5.8872 -6.1226 -0.0876 18 6 4.6347 -6.8867 0.4030 19 1 4.7633 -7.2264 1.4308 20 7 4.3257 -8.0151 -0.4853 21 1 -0.4850 0.8401 -0.0004 22 1 0.3541 -4.7856 0.2422 23 1 1.6946 -6.8447 0.4280 24 1 3.9443 -2.4780 -0.0037 25 1 6.7736 -6.4420 0.4604 26 1 6.0258 -6.2570 -1.1604 27 1 5.0628 -8.7039 -0.4648 28 1 3.4369 -8.4296 -0.2477 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062803745.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:33 Heat of formation + Delta-G solvation = -52.060419 kcal Electronic energy + Delta-G solvation = -14496.062052 eV Core-core repulsion = 11898.336677 eV Total energy + Delta-G solvation = -2597.725375 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.05171 -40.15695 -37.22529 -35.55323 -34.25520 -31.24875 -30.31740 -28.73963 -27.38336 -24.08222 -23.04914 -21.95592 -20.01066 -19.10701 -17.59372 -17.52003 -17.16833 -16.45357 -16.03125 -15.58494 -15.35454 -15.18993 -14.97150 -14.55638 -14.07521 -13.50359 -13.21593 -13.10861 -12.73377 -12.50217 -12.13370 -12.01681 -11.64218 -11.34886 -10.79452 -9.76373 -9.49578 -8.84692 -8.50986 -6.19968 0.48672 0.55217 1.34245 1.41924 1.52635 2.15128 2.32743 2.71798 3.06308 3.38871 3.49128 3.63344 3.79524 4.11601 4.18148 4.40839 4.52200 4.57748 4.73754 4.78289 4.98834 5.11531 5.36471 5.50983 5.59889 5.73227 5.98184 6.15888 6.28100 6.63965 6.93362 7.69058 8.71593 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.049518 B = 0.007174 C = 0.006340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.317380 B = 3902.023092 C = 4415.295482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.017 4.017 3 Si 1.018 2.982 4 H -0.257 1.257 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.419 4.419 8 H 0.097 0.903 9 O -0.219 6.219 10 C 0.151 3.849 11 C -0.224 4.224 12 C -0.009 4.009 13 C -0.244 4.244 14 C 0.137 3.863 15 C -0.270 4.270 16 O -0.326 6.326 17 C 0.050 3.950 18 C 0.124 3.876 19 H 0.074 0.926 20 N -0.837 5.837 21 H 0.275 0.725 22 H 0.129 0.871 23 H 0.160 0.840 24 H 0.115 0.885 25 H 0.136 0.864 26 H 0.085 0.915 27 H 0.358 0.642 28 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.837 -13.458 1.234 16.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.215 4.215 3 Si 0.837 3.163 4 H -0.180 1.180 5 H -0.189 1.189 6 H -0.190 1.190 7 C -0.495 4.495 8 H 0.115 0.885 9 O -0.124 6.124 10 C 0.099 3.901 11 C -0.243 4.243 12 C -0.027 4.027 13 C -0.246 4.246 14 C 0.092 3.908 15 C -0.290 4.290 16 O -0.240 6.240 17 C -0.024 4.024 18 C 0.013 3.987 19 H 0.092 0.908 20 N -0.372 5.372 21 H 0.084 0.916 22 H 0.147 0.853 23 H 0.177 0.823 24 H 0.133 0.867 25 H 0.154 0.846 26 H 0.103 0.897 27 H 0.173 0.827 28 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 9.636 -12.593 0.672 15.871 hybrid contribution 0.059 0.409 0.762 0.867 sum 9.695 -12.184 1.435 15.636 Atomic orbital electron populations 1.70173 1.07866 1.28949 1.48204 1.26560 0.96883 1.02560 0.95518 0.84542 0.78027 0.74840 0.78858 1.18024 1.18945 1.18955 1.21840 0.92453 0.81481 1.53743 0.88544 1.83976 1.35289 1.12429 1.80754 1.19419 0.89762 0.88434 0.92460 1.20408 1.00386 0.89765 1.13781 1.20111 0.91142 0.97585 0.93899 1.20650 0.95055 0.94038 1.14888 1.19231 0.83135 0.94333 0.94138 1.20149 0.92831 0.97668 1.18353 1.86757 1.18911 1.32407 1.85907 1.24203 0.98540 0.76999 1.02682 1.21210 0.91088 0.90634 0.95781 0.90828 1.58562 1.08998 1.12845 1.56786 0.91583 0.85347 0.82278 0.86683 0.84623 0.89661 0.82663 0.82987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.24 13.67 21.61 0.30 -55.94 15 2 C -0.02 -0.97 5.49 84.83 0.47 -0.51 15 3 Si 1.02 43.81 29.55 68.60 2.03 45.84 15 4 H -0.26 -10.47 7.11 99.48 0.71 -9.77 15 5 H -0.26 -10.81 7.11 99.48 0.71 -10.10 15 6 H -0.26 -10.81 7.11 99.48 0.71 -10.11 15 7 C -0.42 -25.17 9.48 67.92 0.64 -24.53 15 8 H 0.10 5.49 5.19 -2.91 -0.02 5.47 15 9 O -0.22 -13.41 9.75 -22.67 -0.22 -13.64 15 10 C 0.15 7.81 6.64 22.51 0.15 7.96 15 11 C -0.22 -9.62 10.01 22.43 0.22 -9.39 15 12 C -0.01 -0.31 10.00 22.17 0.22 -0.09 15 13 C -0.24 -8.30 5.91 -19.48 -0.12 -8.42 15 14 C 0.14 5.63 7.03 22.67 0.16 5.79 15 15 C -0.27 -13.15 9.19 22.57 0.21 -12.95 15 16 O -0.33 -11.65 11.10 -95.17 -1.06 -12.71 15 17 C 0.05 1.21 7.73 72.56 0.56 1.77 15 18 C 0.12 2.91 4.26 45.06 0.19 3.10 15 19 H 0.07 1.48 8.14 -2.38 -0.02 1.46 15 20 N -0.84 -14.93 9.32 -168.09 -1.57 -16.49 15 21 H 0.28 15.37 8.31 -92.70 -0.77 14.60 15 22 H 0.13 5.25 8.06 -2.91 -0.02 5.23 15 23 H 0.16 3.88 8.06 -2.91 -0.02 3.86 15 24 H 0.12 5.86 5.60 -2.91 -0.02 5.85 15 25 H 0.14 2.16 8.14 -2.38 -0.02 2.14 15 26 H 0.09 1.99 8.10 -2.39 -0.02 1.98 15 27 H 0.36 4.12 9.08 -89.69 -0.81 3.31 15 28 H 0.36 5.46 9.03 -89.69 -0.81 4.65 15 Total: -1.00 -73.42 248.16 1.78 -71.64 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -0.41 Total: 18.56 kcal Atomic # 6 Polarization: -39.97 SS G_CDS: 2.71 Total: -37.26 kcal Atomic # 7 Polarization: -71.17 SS G_CDS: -1.27 Total: -72.44 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -1.28 Total: -26.35 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -73.42 1.78 -71.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062803745.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.582 kcal (2) G-P(sol) polarization free energy of solvation -73.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds