Wall clock time and date at job start Mon Mar 30 2020 02:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30859 * 1 3 3 Si 1.86798 * 119.99888 * 2 1 4 4 H 1.48493 * 109.47366 * 270.00054 * 3 2 1 5 5 H 1.48504 * 109.47062 * 30.00155 * 3 2 1 6 6 H 1.48492 * 109.47238 * 149.99725 * 3 2 1 7 7 C 1.39867 * 119.99942 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00114 * 179.97438 * 7 2 1 9 9 C 1.41397 * 120.00446 * 359.97438 * 7 2 1 10 10 N 1.32601 * 126.15340 * 359.69517 * 9 7 2 11 11 N 1.28845 * 108.53277 * 180.25888 * 10 9 7 12 12 H 0.97001 * 125.67585 * 179.97438 * 11 10 9 13 13 C 1.34840 * 108.64866 * 359.97438 * 11 10 9 14 14 C 1.50701 * 126.07332 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.47138 * 125.00258 * 14 13 11 16 16 F 1.39902 * 109.47413 * 59.99606 * 15 14 13 17 17 F 1.39896 * 109.47289 * 180.02562 * 15 14 13 18 18 F 1.39906 * 109.46799 * 299.99827 * 15 14 13 19 19 N 1.30773 * 107.85283 * 0.02562 * 13 11 10 20 20 H 0.96999 * 120.00423 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47003 * 245.00168 * 14 13 11 22 22 H 1.09000 * 109.47052 * 4.99948 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.4900 2.0465 -1.4000 5 1 1.4400 2.6527 0.7001 6 1 3.5400 1.4403 0.7001 7 6 2.0079 -1.2113 -0.0005 8 1 3.0879 -1.2113 -0.0010 9 6 1.3010 -2.4359 -0.0005 10 7 -0.0173 -2.5781 0.0056 11 7 -0.2935 -3.8366 0.0089 12 1 -1.1843 -4.2203 0.0139 13 6 0.8621 -4.5316 0.0042 14 6 0.9947 -6.0327 0.0053 15 6 1.8582 -6.4693 -1.1798 16 9 3.1266 -5.8889 -1.0716 17 9 1.9809 -7.8628 -1.1792 18 9 1.2562 -6.0551 -2.3729 19 7 1.8471 -3.6715 -0.0014 20 1 -0.4851 0.8400 0.0004 21 1 1.4637 -6.3554 0.9349 22 1 0.0065 -6.4849 -0.0791 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070584250.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:23 Heat of formation + Delta-G solvation = -80.566047 kcal Electronic energy + Delta-G solvation = -14915.621589 eV Core-core repulsion = 11671.263034 eV Total energy + Delta-G solvation = -3244.358555 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.047 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.72962 -47.31353 -47.08745 -41.33465 -33.65187 -32.64705 -31.47422 -28.22061 -25.92764 -23.46050 -20.87880 -20.12883 -18.30928 -18.14175 -17.20514 -16.66448 -16.41146 -14.68156 -14.48860 -14.16962 -14.05980 -13.64602 -13.33809 -13.32765 -13.26777 -12.92301 -12.57536 -11.75576 -11.16223 -11.11776 -10.52584 -10.18572 -10.03094 -9.45959 -8.83801 -8.43367 -7.76559 -6.40613 -4.34697 2.78857 3.14511 3.22739 3.28066 3.36636 3.97504 4.10450 4.15406 4.29096 4.41006 4.57044 5.03979 5.24789 5.48397 5.63985 6.51435 7.02608 7.45753 8.14561 8.20825 8.59559 8.86480 9.11782 10.17427 10.59575 Molecular weight = 221.05amu Principal moments of inertia in cm(-1) A = 0.057779 B = 0.007731 C = 0.007218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.488250 B = 3621.108496 C = 3878.468785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.072 3.928 3 Si 0.917 3.083 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.435 4.435 8 H 0.087 0.913 9 C 0.322 3.678 10 N -0.336 5.336 11 N -0.430 5.430 12 H 0.421 0.579 13 C 0.143 3.857 14 C -0.065 4.065 15 C 0.461 3.539 16 F -0.163 7.163 17 F -0.192 7.192 18 F -0.184 7.184 19 N -0.528 5.528 20 H 0.271 0.729 21 H 0.124 0.876 22 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.576 -10.282 -0.261 10.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.147 4.147 3 Si 0.742 3.258 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.478 4.478 8 H 0.105 0.895 9 C 0.063 3.937 10 N -0.174 5.174 11 N -0.150 5.150 12 H 0.262 0.738 13 C -0.134 4.134 14 C -0.106 4.106 15 C 0.406 3.594 16 F -0.144 7.144 17 F -0.174 7.174 18 F -0.165 7.165 19 N -0.259 5.259 20 H 0.081 0.919 21 H 0.142 0.858 22 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.718 -9.663 -0.282 9.694 hybrid contribution -0.162 0.221 -0.192 0.334 sum -0.880 -9.443 -0.474 9.495 Atomic orbital electron populations 1.69943 1.06888 1.27785 1.36461 1.25737 0.94876 1.00625 0.93453 0.86186 0.80092 0.80706 0.78850 1.19773 1.20572 1.18771 1.18249 0.93885 0.86385 1.49242 0.89495 1.20938 0.85665 0.90897 0.96163 1.75481 1.17635 0.92422 1.31814 1.45105 1.07700 1.05625 1.56570 0.73789 1.23398 0.85814 0.93907 1.10302 1.20880 1.01605 0.90747 0.97374 1.20250 0.80625 0.73970 0.84586 1.93271 1.41234 1.83889 1.96008 1.93153 1.96342 1.31056 1.96847 1.93186 1.83355 1.90090 1.49899 1.71370 1.29121 1.00648 1.24780 0.91854 0.85799 0.86865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -22.01 11.94 55.54 0.66 -21.35 14 2 C 0.07 1.97 5.49 -17.36 -0.10 1.88 14 3 Si 0.92 20.11 29.56 -169.99 -5.02 15.09 14 4 H -0.27 -5.89 7.11 56.52 0.40 -5.48 14 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 14 6 H -0.26 -5.68 7.11 56.52 0.40 -5.28 14 7 C -0.44 -12.63 9.50 -37.77 -0.36 -12.99 14 8 H 0.09 2.44 7.84 -52.49 -0.41 2.03 14 9 C 0.32 9.32 7.64 -157.66 -1.20 8.11 14 10 N -0.34 -9.22 10.55 30.88 0.33 -8.89 14 11 N -0.43 -9.28 6.93 32.68 0.23 -9.05 14 12 H 0.42 6.98 8.96 -190.21 -1.71 5.28 14 13 C 0.14 2.99 7.22 -155.37 -1.12 1.87 14 14 C -0.07 -0.93 5.89 -27.89 -0.16 -1.09 14 15 C 0.46 7.26 3.15 37.15 0.12 7.38 14 16 F -0.16 -3.05 16.38 2.25 0.04 -3.01 14 17 F -0.19 -2.63 17.32 2.25 0.04 -2.59 14 18 F -0.18 -3.21 17.02 2.25 0.04 -3.17 14 19 N -0.53 -13.70 10.61 -9.95 -0.11 -13.81 14 20 H 0.27 6.97 8.30 -40.82 -0.34 6.64 14 21 H 0.12 1.50 8.14 -51.93 -0.42 1.08 14 22 H 0.11 1.14 8.14 -51.93 -0.42 0.72 14 LS Contribution 221.92 15.07 3.34 3.34 Total: -1.00 -33.49 221.92 -5.38 -38.87 By element: Atomic # 1 Polarization: 1.50 SS G_CDS: -2.10 Total: -0.59 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -2.83 Total: 5.16 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: 1.11 Total: -53.10 kcal Atomic # 9 Polarization: -8.88 SS G_CDS: 0.11 Total: -8.77 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -33.49 -5.38 -38.87 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070584250.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.701 kcal (2) G-P(sol) polarization free energy of solvation -33.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds