Wall clock time and date at job start Mon Mar 30 2020 02:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30859 * 1 3 3 Si 1.86798 * 119.99888 * 2 1 4 4 H 1.48493 * 109.47366 * 270.00054 * 3 2 1 5 5 H 1.48504 * 109.47062 * 30.00155 * 3 2 1 6 6 H 1.48492 * 109.47238 * 149.99725 * 3 2 1 7 7 C 1.39867 * 119.99942 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00114 * 179.97438 * 7 2 1 9 9 C 1.41397 * 120.00446 * 359.97438 * 7 2 1 10 10 N 1.32601 * 126.15340 * 359.69517 * 9 7 2 11 11 N 1.28845 * 108.53277 * 180.25888 * 10 9 7 12 12 H 0.97001 * 125.67585 * 179.97438 * 11 10 9 13 13 C 1.34840 * 108.64866 * 359.97438 * 11 10 9 14 14 C 1.50701 * 126.07332 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.47138 * 125.00258 * 14 13 11 16 16 F 1.39902 * 109.47413 * 59.99606 * 15 14 13 17 17 F 1.39896 * 109.47289 * 180.02562 * 15 14 13 18 18 F 1.39906 * 109.46799 * 299.99827 * 15 14 13 19 19 N 1.30773 * 107.85283 * 0.02562 * 13 11 10 20 20 H 0.96999 * 120.00423 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47003 * 245.00168 * 14 13 11 22 22 H 1.09000 * 109.47052 * 4.99948 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.4900 2.0465 -1.4000 5 1 1.4400 2.6527 0.7001 6 1 3.5400 1.4403 0.7001 7 6 2.0079 -1.2113 -0.0005 8 1 3.0879 -1.2113 -0.0010 9 6 1.3010 -2.4359 -0.0005 10 7 -0.0173 -2.5781 0.0056 11 7 -0.2935 -3.8366 0.0089 12 1 -1.1843 -4.2203 0.0139 13 6 0.8621 -4.5316 0.0042 14 6 0.9947 -6.0327 0.0053 15 6 1.8582 -6.4693 -1.1798 16 9 3.1266 -5.8889 -1.0716 17 9 1.9809 -7.8628 -1.1792 18 9 1.2562 -6.0551 -2.3729 19 7 1.8471 -3.6715 -0.0014 20 1 -0.4851 0.8400 0.0004 21 1 1.4637 -6.3554 0.9349 22 1 0.0065 -6.4849 -0.0791 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070584250.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:23 Heat of formation + Delta-G solvation = -104.144506 kcal Electronic energy + Delta-G solvation = -14916.644028 eV Core-core repulsion = 11671.263034 eV Total energy + Delta-G solvation = -3245.380994 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.047 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -51.00183 -48.54769 -48.43847 -43.20199 -35.59204 -34.20435 -33.35196 -29.99458 -27.91979 -24.83360 -22.79508 -21.87364 -19.69426 -19.43864 -18.71369 -18.51805 -18.05671 -16.50841 -16.21953 -15.52399 -15.38989 -15.03409 -14.91925 -14.65562 -14.58874 -14.51788 -13.87654 -13.10167 -12.96483 -12.87221 -12.60994 -11.95861 -11.87698 -11.37787 -10.74976 -10.39461 -9.72269 -8.41688 -6.45501 1.25350 1.42777 1.44227 1.59332 1.92257 2.31602 2.34505 2.48214 2.87486 3.12375 3.20511 3.52475 3.69300 4.09941 4.40909 4.70989 5.14783 5.41892 6.22315 6.28136 6.71026 6.88600 7.07841 8.24062 8.60449 Molecular weight = 221.05amu Principal moments of inertia in cm(-1) A = 0.057779 B = 0.007731 C = 0.007218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.488250 B = 3621.108496 C = 3878.468785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.028 3.972 3 Si 0.996 3.004 4 H -0.265 1.265 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.477 4.477 8 H 0.079 0.921 9 C 0.290 3.710 10 N -0.372 5.372 11 N -0.423 5.423 12 H 0.443 0.557 13 C 0.167 3.833 14 C -0.060 4.060 15 C 0.461 3.539 16 F -0.185 7.185 17 F -0.175 7.175 18 F -0.196 7.196 19 N -0.567 5.567 20 H 0.278 0.722 21 H 0.155 0.845 22 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.877 -11.082 0.029 11.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.188 4.188 3 Si 0.816 3.184 4 H -0.190 1.190 5 H -0.192 1.192 6 H -0.183 1.183 7 C -0.519 4.519 8 H 0.097 0.903 9 C 0.029 3.971 10 N -0.209 5.209 11 N -0.144 5.144 12 H 0.288 0.712 13 C -0.111 4.111 14 C -0.100 4.100 15 C 0.406 3.594 16 F -0.166 7.166 17 F -0.157 7.157 18 F -0.178 7.178 19 N -0.298 5.298 20 H 0.088 0.912 21 H 0.173 0.827 22 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -1.057 -10.502 0.008 10.555 hybrid contribution -0.117 0.263 -0.293 0.411 sum -1.175 -10.239 -0.285 10.310 Atomic orbital electron populations 1.70029 1.08449 1.29182 1.36841 1.26689 0.95822 1.04051 0.92263 0.85011 0.78644 0.75551 0.79184 1.19008 1.19154 1.18335 1.18576 0.93926 0.88002 1.51410 0.90261 1.21256 0.86537 0.92073 0.97222 1.75316 1.17383 0.95354 1.32875 1.44957 1.09220 1.04382 1.55891 0.71171 1.24297 0.84380 0.96333 1.06108 1.21244 1.04681 0.86009 0.98033 1.20399 0.79874 0.74577 0.84530 1.93237 1.42884 1.84428 1.96079 1.93188 1.96220 1.29515 1.96757 1.93169 1.83422 1.90340 1.50864 1.71331 1.31138 1.00515 1.26864 0.91198 0.82728 0.81634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.57 11.94 21.81 0.26 -46.31 14 2 C 0.03 1.53 5.49 85.23 0.47 2.00 14 3 Si 1.00 41.58 29.56 68.60 2.03 43.61 14 4 H -0.27 -10.68 7.11 99.48 0.71 -9.98 14 5 H -0.27 -10.46 7.11 99.48 0.71 -9.76 14 6 H -0.26 -10.53 7.11 99.48 0.71 -9.83 14 7 C -0.48 -28.51 9.50 23.44 0.22 -28.29 14 8 H 0.08 4.63 7.84 -2.91 -0.02 4.61 14 9 C 0.29 17.11 7.64 134.85 1.03 18.14 14 10 N -0.37 -20.58 10.55 -56.21 -0.59 -21.17 14 11 N -0.42 -17.73 6.93 -50.51 -0.35 -18.09 14 12 H 0.44 13.76 8.96 -219.80 -1.97 11.79 14 13 C 0.17 6.71 7.22 138.11 1.00 7.71 14 14 C -0.06 -1.48 5.89 29.85 0.18 -1.30 14 15 C 0.46 13.37 3.15 71.98 0.23 13.60 14 16 F -0.18 -6.73 16.38 44.97 0.74 -5.99 14 17 F -0.18 -4.22 17.32 44.97 0.78 -3.44 14 18 F -0.20 -6.49 17.02 44.97 0.77 -5.73 14 19 N -0.57 -29.56 10.61 -185.39 -1.97 -31.53 14 20 H 0.28 14.40 8.30 -92.71 -0.77 13.63 14 21 H 0.15 3.04 8.14 -2.39 -0.02 3.02 14 22 H 0.17 2.40 8.14 -2.39 -0.02 2.38 14 Total: -1.00 -75.02 221.92 4.10 -70.92 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -0.68 Total: 5.87 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: 3.12 Total: 11.85 kcal Atomic # 7 Polarization: -114.44 SS G_CDS: -2.65 Total: -117.09 kcal Atomic # 9 Polarization: -17.44 SS G_CDS: 2.28 Total: -15.16 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Total: -75.02 4.10 -70.92 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070584250.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.225 kcal (2) G-P(sol) polarization free energy of solvation -75.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds