Wall clock time and date at job start Mon Mar 30 2020 02:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47132 * 119.99654 * 3 2 1 6 6 H 1.48501 * 109.47173 * 239.99775 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.08002 * 119.99701 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99783 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47517 * 60.00191 * 9 7 2 11 11 N 1.46899 * 109.47148 * 299.99699 * 9 7 2 12 12 C 1.50701 * 109.46833 * 180.02562 * 9 7 2 13 13 C 1.38255 * 119.93260 * 79.72808 * 12 9 7 14 14 C 1.38237 * 120.14132 * 179.69186 * 13 12 9 15 15 C 1.38543 * 120.03176 * 0.58799 * 14 13 12 16 16 C 1.39264 * 119.82717 * 359.69072 * 15 14 13 17 17 C 1.38245 * 119.92523 * 260.00278 * 12 9 7 18 18 O 1.36505 * 108.64099 * 179.97438 * 16 15 14 19 19 C 1.43986 * 105.48475 * 342.72180 * 18 16 15 20 20 O 1.36500 * 131.53418 * 179.68610 * 15 14 13 21 21 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 22 22 H 1.00903 * 111.00162 * 176.04804 * 11 9 7 23 23 H 1.00898 * 111.00359 * 299.99874 * 11 9 7 24 24 H 1.07995 * 119.92660 * 359.97232 * 13 12 9 25 25 H 1.08000 * 119.98392 * 180.27404 * 14 13 12 26 26 H 1.07996 * 119.98516 * 359.97438 * 17 12 9 27 27 H 1.09003 * 110.57030 * 268.55875 * 19 18 16 28 28 H 1.08996 * 110.57809 * 145.67980 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6963 1.2126 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0053 9 6 1.2509 -2.4991 -0.0125 10 1 0.6246 -2.5525 -0.9029 11 7 0.4059 -2.5829 1.1863 12 6 2.2301 -3.6446 -0.0171 13 6 2.8399 -4.0358 1.1604 14 6 3.7340 -5.0900 1.1622 15 6 4.0305 -5.7498 -0.0194 16 6 3.4207 -5.3521 -1.2066 17 6 2.5211 -4.2984 -1.2000 18 8 3.8739 -6.1488 -2.2181 19 6 5.0706 -6.7692 -1.7121 20 8 4.8654 -6.7960 -0.2870 21 1 -0.4850 0.8401 0.0040 22 1 -0.1581 -3.4195 1.1734 23 1 0.9636 -2.5357 2.0258 24 1 2.6138 -3.5194 2.0816 25 1 4.2055 -5.3963 2.0843 26 1 2.0464 -3.9881 -2.1191 27 1 5.9470 -6.1712 -1.9619 28 1 5.1722 -7.7815 -2.1033 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071500586.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:19 Heat of formation + Delta-G solvation = -32.056738 kcal Electronic energy + Delta-G solvation = -14610.559393 eV Core-core repulsion = 12013.701443 eV Total energy + Delta-G solvation = -2596.857950 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.79165 -37.91083 -35.97390 -34.14230 -31.53394 -30.17850 -28.78058 -26.09200 -25.39121 -23.04700 -22.41142 -20.53337 -17.56674 -17.12696 -16.99313 -16.24024 -15.89278 -14.54257 -14.47147 -14.10978 -13.55850 -13.48323 -13.35799 -12.70123 -12.65127 -12.22308 -11.80064 -11.34666 -10.88393 -10.83383 -10.55601 -10.47691 -9.79712 -9.22650 -8.46214 -8.30670 -7.59196 -7.11223 -5.90629 -4.06278 1.65233 1.73389 3.06723 3.34291 3.39182 3.41835 3.70891 4.13446 4.48206 4.81096 4.90539 4.99154 5.33646 5.47999 5.54959 5.76489 5.80436 5.97518 6.26306 6.47923 6.54731 6.80308 6.93087 6.94937 7.49323 7.55338 7.87393 8.13367 8.58012 8.95990 9.10107 9.62641 11.13524 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.043749 B = 0.007353 C = 0.007080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.856192 B = 3807.113124 C = 3953.587890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.085 3.915 3 Si 0.886 3.114 4 H -0.288 1.288 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.533 4.533 8 H 0.054 0.946 9 C 0.257 3.743 10 H 0.050 0.950 11 N -0.808 5.808 12 C -0.059 4.059 13 C -0.114 4.114 14 C -0.099 4.099 15 C -0.003 4.003 16 C 0.026 3.974 17 C -0.100 4.100 18 O -0.315 6.315 19 C 0.214 3.786 20 O -0.317 6.317 21 H 0.257 0.743 22 H 0.300 0.700 23 H 0.318 0.682 24 H 0.134 0.866 25 H 0.125 0.875 26 H 0.131 0.869 27 H 0.077 0.923 28 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.000 -10.199 -0.449 12.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.122 4.122 3 Si 0.714 3.286 4 H -0.213 1.213 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.572 4.572 8 H 0.072 0.928 9 C 0.147 3.853 10 H 0.068 0.932 11 N -0.334 5.334 12 C -0.062 4.062 13 C -0.133 4.133 14 C -0.118 4.118 15 C -0.046 4.046 16 C -0.018 4.018 17 C -0.119 4.119 18 O -0.232 6.232 19 C 0.102 3.898 20 O -0.234 6.234 21 H 0.067 0.933 22 H 0.110 0.890 23 H 0.131 0.869 24 H 0.151 0.849 25 H 0.143 0.857 26 H 0.149 0.851 27 H 0.094 0.906 28 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.479 -9.596 -0.796 11.606 hybrid contribution 1.358 -0.126 0.043 1.365 sum 7.837 -9.721 -0.753 12.510 Atomic orbital electron populations 1.70092 1.05680 1.25936 1.46300 1.24941 0.94655 0.98555 0.94093 0.86790 0.79715 0.83539 0.78583 1.21327 1.20296 1.20355 1.20775 0.92230 0.89281 1.54925 0.92764 1.18220 0.87340 0.88429 0.91321 0.93206 1.59214 1.27870 1.42097 1.04212 1.21693 0.97345 0.96412 0.90760 1.20794 0.96847 0.96268 0.99343 1.19999 1.00721 0.96086 0.94947 1.19646 0.97630 0.91648 0.95717 1.19873 1.00878 0.95323 0.85696 1.20121 0.98938 0.92848 0.99994 1.87310 1.40848 1.57742 1.37260 1.25464 0.88041 0.99675 0.76631 1.87275 1.65054 1.46651 1.24458 0.93297 0.88970 0.86879 0.84854 0.85694 0.85116 0.90585 0.85930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.02 12.77 55.43 0.71 -23.32 15 2 C 0.08 2.30 5.39 -17.82 -0.10 2.21 15 3 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 15 4 H -0.29 -6.77 7.11 56.52 0.40 -6.36 15 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 7 C -0.53 -14.17 8.70 -34.44 -0.30 -14.47 15 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 15 9 C 0.26 6.10 2.85 -70.02 -0.20 5.90 15 10 H 0.05 1.30 8.00 -51.93 -0.42 0.88 15 11 N -0.81 -18.08 8.36 -6.65 -0.06 -18.14 15 12 C -0.06 -1.21 4.88 -104.61 -0.51 -1.72 15 13 C -0.11 -2.08 9.28 -39.58 -0.37 -2.44 15 14 C -0.10 -1.66 10.06 -39.47 -0.40 -2.06 15 15 C 0.00 -0.05 7.15 -39.09 -0.28 -0.33 15 16 C 0.03 0.48 7.15 -39.09 -0.28 0.20 15 17 C -0.10 -1.96 9.68 -39.46 -0.38 -2.34 15 18 O -0.32 -5.27 11.40 -45.71 -0.52 -5.79 15 19 C 0.21 2.75 8.89 101.05 0.90 3.65 15 20 O -0.32 -5.07 11.40 -45.69 -0.52 -5.59 15 21 H 0.26 7.02 8.31 -40.82 -0.34 6.68 15 22 H 0.30 5.99 9.06 -39.29 -0.36 5.64 15 23 H 0.32 6.68 7.34 -39.29 -0.29 6.39 15 24 H 0.13 2.28 6.66 -52.49 -0.35 1.93 15 25 H 0.13 1.76 8.06 -52.49 -0.42 1.34 15 26 H 0.13 2.48 8.03 -52.49 -0.42 2.06 15 27 H 0.08 0.83 8.14 -51.93 -0.42 0.41 15 28 H 0.12 1.11 8.14 -51.93 -0.42 0.68 15 LS Contribution 248.31 15.07 3.74 3.74 Total: -1.00 -29.89 248.31 -6.22 -36.11 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -2.64 Total: 8.48 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -1.91 Total: -11.41 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.65 Total: -41.45 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: -1.04 Total: -11.38 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -29.89 -6.22 -36.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071500586.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.055 kcal (2) G-P(sol) polarization free energy of solvation -29.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds