Wall clock time and date at job start Mon Mar 30 2020 02:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47132 * 119.99654 * 3 2 1 6 6 H 1.48501 * 109.47173 * 239.99775 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.08002 * 119.99701 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99783 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47517 * 60.00191 * 9 7 2 11 11 N 1.46899 * 109.47148 * 299.99699 * 9 7 2 12 12 C 1.50701 * 109.46833 * 180.02562 * 9 7 2 13 13 C 1.38255 * 119.93260 * 79.72808 * 12 9 7 14 14 C 1.38237 * 120.14132 * 179.69186 * 13 12 9 15 15 C 1.38543 * 120.03176 * 0.58799 * 14 13 12 16 16 C 1.39264 * 119.82717 * 359.69072 * 15 14 13 17 17 C 1.38245 * 119.92523 * 260.00278 * 12 9 7 18 18 O 1.36505 * 108.64099 * 179.97438 * 16 15 14 19 19 C 1.43986 * 105.48475 * 342.72180 * 18 16 15 20 20 O 1.36500 * 131.53418 * 179.68610 * 15 14 13 21 21 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 22 22 H 1.00903 * 111.00162 * 176.04804 * 11 9 7 23 23 H 1.00898 * 111.00359 * 299.99874 * 11 9 7 24 24 H 1.07995 * 119.92660 * 359.97232 * 13 12 9 25 25 H 1.08000 * 119.98392 * 180.27404 * 14 13 12 26 26 H 1.07996 * 119.98516 * 359.97438 * 17 12 9 27 27 H 1.09003 * 110.57030 * 268.55875 * 19 18 16 28 28 H 1.08996 * 110.57809 * 145.67980 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6963 1.2126 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0053 9 6 1.2509 -2.4991 -0.0125 10 1 0.6246 -2.5525 -0.9029 11 7 0.4059 -2.5829 1.1863 12 6 2.2301 -3.6446 -0.0171 13 6 2.8399 -4.0358 1.1604 14 6 3.7340 -5.0900 1.1622 15 6 4.0305 -5.7498 -0.0194 16 6 3.4207 -5.3521 -1.2066 17 6 2.5211 -4.2984 -1.2000 18 8 3.8739 -6.1488 -2.2181 19 6 5.0706 -6.7692 -1.7121 20 8 4.8654 -6.7960 -0.2870 21 1 -0.4850 0.8401 0.0040 22 1 -0.1581 -3.4195 1.1734 23 1 0.9636 -2.5357 2.0258 24 1 2.6138 -3.5194 2.0816 25 1 4.2055 -5.3963 2.0843 26 1 2.0464 -3.9881 -2.1191 27 1 5.9470 -6.1712 -1.9619 28 1 5.1722 -7.7815 -2.1033 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071500586.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:19 Heat of formation + Delta-G solvation = -53.120476 kcal Electronic energy + Delta-G solvation = -14611.472785 eV Core-core repulsion = 12013.701443 eV Total energy + Delta-G solvation = -2597.771342 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.06462 -39.39750 -37.23461 -35.91146 -33.48436 -31.61087 -30.23203 -27.96527 -26.61854 -24.69157 -23.81552 -22.14963 -18.89652 -18.63737 -18.37878 -17.96810 -17.19234 -16.44437 -16.12365 -15.40968 -15.15899 -14.93108 -14.78249 -14.30584 -13.95912 -13.70562 -13.39793 -13.18039 -12.69290 -12.58153 -12.14867 -11.97181 -11.58201 -11.10312 -10.52424 -9.76400 -9.10728 -8.76842 -7.96033 -6.17821 0.22493 0.30344 1.47381 1.47658 1.55030 1.82046 2.47672 2.57340 2.71636 3.28164 3.53883 3.85327 4.02112 4.19370 4.27347 4.29351 4.37690 4.48765 4.64165 5.07802 5.11301 5.26401 5.34645 5.48670 5.75956 5.81925 6.15431 6.21849 6.66958 7.13149 7.28979 7.54691 9.06989 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.043749 B = 0.007353 C = 0.007080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.856192 B = 3807.113124 C = 3953.587890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.038 3.962 3 Si 0.947 3.053 4 H -0.286 1.286 5 H -0.271 1.271 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.048 0.952 9 C 0.263 3.737 10 H 0.015 0.985 11 N -0.818 5.818 12 C -0.078 4.078 13 C -0.112 4.112 14 C -0.092 4.092 15 C 0.000 4.000 16 C 0.020 3.980 17 C -0.116 4.116 18 O -0.328 6.328 19 C 0.204 3.796 20 O -0.321 6.321 21 H 0.256 0.744 22 H 0.313 0.687 23 H 0.327 0.673 24 H 0.144 0.856 25 H 0.158 0.842 26 H 0.123 0.877 27 H 0.099 0.901 28 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.788 -11.145 0.132 14.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.166 4.166 3 Si 0.773 3.227 4 H -0.212 1.212 5 H -0.196 1.196 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.066 0.934 9 C 0.153 3.847 10 H 0.032 0.968 11 N -0.345 5.345 12 C -0.080 4.080 13 C -0.130 4.130 14 C -0.110 4.110 15 C -0.044 4.044 16 C -0.025 4.025 17 C -0.135 4.135 18 O -0.245 6.245 19 C 0.094 3.906 20 O -0.238 6.238 21 H 0.065 0.935 22 H 0.125 0.875 23 H 0.141 0.859 24 H 0.161 0.839 25 H 0.176 0.824 26 H 0.141 0.859 27 H 0.116 0.884 28 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 8.288 -10.559 -0.219 13.425 hybrid contribution 0.876 0.027 -0.193 0.897 sum 9.164 -10.532 -0.412 13.966 Atomic orbital electron populations 1.70216 1.07005 1.26499 1.47705 1.25646 0.95388 1.01676 0.93937 0.85817 0.78478 0.79737 0.78649 1.21178 1.19610 1.20134 1.21079 0.92122 0.90810 1.54216 0.93394 1.17834 0.87490 0.88992 0.90421 0.96758 1.59001 1.28243 1.43206 1.04089 1.21296 0.98147 0.96393 0.92206 1.20875 0.96726 0.96701 0.98710 1.20266 0.99709 0.94958 0.96056 1.19853 0.97317 0.91702 0.95566 1.19865 1.00638 0.95149 0.86810 1.20055 0.99924 0.93946 0.99590 1.87291 1.42394 1.57498 1.37327 1.26099 0.87194 1.02296 0.75060 1.87269 1.64486 1.45765 1.26270 0.93511 0.87522 0.85941 0.83853 0.82399 0.85920 0.88390 0.81730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.69 12.77 21.45 0.27 -50.41 15 2 C 0.04 2.05 5.39 84.66 0.46 2.51 15 3 Si 0.95 43.11 29.54 68.60 2.03 45.14 15 4 H -0.29 -12.86 7.11 99.48 0.71 -12.15 15 5 H -0.27 -11.96 7.11 99.48 0.71 -11.25 15 6 H -0.28 -12.35 7.11 99.48 0.71 -11.64 15 7 C -0.54 -29.24 8.70 25.60 0.22 -29.01 15 8 H 0.05 2.58 7.74 -2.91 -0.02 2.55 15 9 C 0.26 12.79 2.85 43.42 0.12 12.91 15 10 H 0.01 0.79 8.00 -2.39 -0.02 0.77 15 11 N -0.82 -36.95 8.36 -174.96 -1.46 -38.41 15 12 C -0.08 -3.19 4.88 -19.86 -0.10 -3.29 15 13 C -0.11 -3.92 9.28 22.27 0.21 -3.71 15 14 C -0.09 -2.84 10.06 22.34 0.22 -2.61 15 15 C 0.00 -0.01 7.15 22.59 0.16 0.15 15 16 C 0.02 0.70 7.15 22.59 0.16 0.87 15 17 C -0.12 -4.60 9.68 22.35 0.22 -4.39 15 18 O -0.33 -10.39 11.40 -76.11 -0.87 -11.26 15 19 C 0.20 4.57 8.89 113.37 1.01 5.57 15 20 O -0.32 -9.21 11.40 -76.05 -0.87 -10.08 15 21 H 0.26 14.17 8.31 -92.70 -0.77 13.40 15 22 H 0.31 12.63 9.06 -89.69 -0.81 11.81 15 23 H 0.33 13.64 7.34 -89.70 -0.66 12.98 15 24 H 0.14 4.67 6.66 -2.91 -0.02 4.65 15 25 H 0.16 3.83 8.06 -2.91 -0.02 3.80 15 26 H 0.12 4.90 8.03 -2.91 -0.02 4.87 15 27 H 0.10 1.79 8.14 -2.39 -0.02 1.77 15 28 H 0.17 2.26 8.14 -2.39 -0.02 2.24 15 Total: -1.00 -63.75 248.31 1.52 -62.24 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: -0.27 Total: 23.80 kcal Atomic # 6 Polarization: -23.70 SS G_CDS: 2.68 Total: -21.02 kcal Atomic # 7 Polarization: -87.63 SS G_CDS: -1.19 Total: -88.82 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -1.74 Total: -21.34 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -63.75 1.52 -62.24 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071500586.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.115 kcal (2) G-P(sol) polarization free energy of solvation -63.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds