Wall clock time and date at job start Mon Mar 30 2020 03:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86801 * 120.00214 * 2 1 4 4 H 1.48497 * 109.47065 * 270.00268 * 3 2 1 5 5 H 1.48504 * 109.46827 * 29.99946 * 3 2 1 6 6 H 1.48496 * 109.47214 * 150.00096 * 3 2 1 7 7 C 1.39942 * 119.99848 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99961 * 197.86265 * 7 2 1 9 9 C 1.41399 * 120.00311 * 17.86071 * 7 2 1 10 10 C 1.40731 * 120.23956 * 24.39515 * 9 7 2 11 11 C 1.37599 * 119.74154 * 179.97438 * 10 9 7 12 12 C 1.38661 * 120.25041 * 0.02562 * 11 10 9 13 13 C 1.38607 * 120.49876 * 359.97262 * 12 11 10 14 14 C 1.50701 * 119.87698 * 179.72639 * 13 12 11 15 15 H 1.09000 * 109.47302 * 160.00728 * 14 13 12 16 16 N 1.46901 * 109.46947 * 40.00237 * 14 13 12 17 17 C 1.50701 * 109.47125 * 280.00662 * 14 13 12 18 18 O 1.20828 * 120.00392 * 99.99500 * 17 14 13 19 19 O 1.34229 * 120.00152 * 279.99662 * 17 14 13 20 20 C 1.37643 * 120.25308 * 0.02562 * 13 12 11 21 21 H 0.97000 * 119.99625 * 0.02562 * 1 2 3 22 22 H 1.07997 * 120.13353 * 359.95636 * 10 9 7 23 23 H 1.07999 * 119.87406 * 179.97438 * 11 10 9 24 24 H 1.07994 * 119.74718 * 180.02562 * 12 11 10 25 25 H 1.00903 * 110.99789 * 300.00049 * 16 14 13 26 26 H 1.00895 * 110.99898 * 63.95205 * 16 14 13 27 27 H 0.96695 * 117.00709 * 180.02562 * 19 17 14 28 28 H 1.08001 * 120.13380 * 179.97438 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4397 2.6526 0.7001 6 1 3.5399 1.4401 0.7000 7 6 2.0080 -1.2119 -0.0005 8 1 3.0489 -1.2346 0.2863 9 6 1.3521 -2.4068 -0.3766 10 6 0.2209 -2.3615 -1.2126 11 6 -0.4091 -3.5306 -1.5727 12 6 0.0663 -4.7500 -1.1146 13 6 1.1796 -4.8065 -0.2908 14 6 1.6805 -6.1389 0.2039 15 1 2.7190 -6.0418 0.5207 16 7 1.5890 -7.1287 -0.8777 17 6 0.8396 -6.5902 1.3702 18 8 -0.0381 -7.4036 1.2034 19 8 1.0657 -6.0885 2.5946 20 6 1.8257 -3.6498 0.0821 21 1 -0.4849 0.8401 -0.0004 22 1 -0.1515 -1.4129 -1.5700 23 1 -1.2776 -3.4983 -2.2138 24 1 -0.4342 -5.6626 -1.4026 25 1 0.6353 -7.2369 -1.1890 26 1 2.1944 -6.8816 -1.6461 27 1 0.5010 -6.4084 3.3113 28 1 2.6927 -3.6960 0.7244 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072191079.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:48 Heat of formation + Delta-G solvation = -80.130175 kcal Electronic energy + Delta-G solvation = -14511.412079 eV Core-core repulsion = 11912.469508 eV Total energy + Delta-G solvation = -2598.942571 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.98868 -37.82214 -35.84657 -34.71308 -33.16393 -30.01113 -29.19927 -25.96037 -25.33873 -21.65922 -20.87827 -19.90026 -17.92052 -17.20302 -16.60152 -15.63613 -15.15752 -14.84212 -14.38919 -13.90747 -13.70229 -13.17426 -12.79856 -12.32052 -11.83300 -11.69652 -11.26528 -11.23865 -11.14440 -10.73204 -10.58707 -10.18801 -9.99432 -9.54485 -9.25072 -8.57062 -7.62333 -7.47927 -6.85728 -4.46748 2.44937 2.68810 2.85480 3.02343 3.05791 3.12048 3.43627 3.86403 4.49051 5.03155 5.49620 5.51398 5.53792 5.72450 6.21370 6.28638 6.80263 6.82932 6.93038 7.04045 7.16356 7.25906 7.41688 7.61244 7.72695 7.90676 7.92356 8.12687 8.29630 8.50973 8.77465 8.83240 10.09234 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.042528 B = 0.007487 C = 0.007079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.233436 B = 3738.720196 C = 3954.163931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.076 3.924 3 Si 0.910 3.090 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.261 1.261 7 C -0.461 4.461 8 H 0.080 0.920 9 C 0.108 3.892 10 C -0.157 4.157 11 C -0.103 4.103 12 C -0.232 4.232 13 C -0.109 4.109 14 C 0.150 3.850 15 H 0.111 0.889 16 N -0.828 5.828 17 C 0.497 3.503 18 O -0.519 6.519 19 O -0.511 6.511 20 C -0.199 4.199 21 H 0.282 0.718 22 H 0.120 0.880 23 H 0.090 0.910 24 H 0.088 0.912 25 H 0.350 0.650 26 H 0.354 0.646 27 H 0.404 0.596 28 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.332 -4.269 0.471 4.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.490 4.490 8 H 0.098 0.902 9 C 0.105 3.895 10 C -0.176 4.176 11 C -0.122 4.122 12 C -0.252 4.252 13 C -0.111 4.111 14 C 0.037 3.963 15 H 0.129 0.871 16 N -0.360 5.360 17 C 0.339 3.661 18 O -0.407 6.407 19 O -0.321 6.321 20 C -0.219 4.219 21 H 0.093 0.907 22 H 0.137 0.863 23 H 0.108 0.892 24 H 0.106 0.894 25 H 0.165 0.835 26 H 0.168 0.832 27 H 0.262 0.738 28 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.416 -4.724 0.673 5.349 hybrid contribution -0.559 1.425 -0.019 1.530 sum 1.857 -3.300 0.654 3.843 Atomic orbital electron populations 1.69820 1.07661 1.29403 1.34830 1.25930 0.94727 1.01451 0.92134 0.86280 0.80508 0.80412 0.79368 1.19227 1.20281 1.18515 1.19599 0.98236 0.91158 1.40048 0.90214 1.17608 0.91211 0.91938 0.88701 1.21413 0.99047 0.96893 1.00268 1.20646 0.98625 0.93073 0.99855 1.20118 1.00490 0.96501 1.08096 1.19589 0.98094 0.92709 1.00677 1.19715 0.98836 0.89374 0.88336 0.87071 1.58797 1.15293 1.48099 1.13836 1.23361 0.82350 0.76885 0.83505 1.90634 1.32430 1.32613 1.84977 1.84573 1.61471 1.67108 1.18988 1.20852 1.03496 0.91974 1.05560 0.90736 0.86262 0.89160 0.89431 0.83459 0.83227 0.73828 0.88407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.06 10.95 55.55 0.61 -19.45 15 2 C 0.08 1.85 5.14 -17.34 -0.09 1.76 15 3 Si 0.91 18.15 29.60 -169.99 -5.03 13.12 15 4 H -0.27 -5.27 7.11 56.52 0.40 -4.87 15 5 H -0.28 -5.44 7.11 56.52 0.40 -5.04 15 6 H -0.26 -5.14 7.11 56.52 0.40 -4.74 15 7 C -0.46 -11.85 9.05 -37.74 -0.34 -12.19 15 8 H 0.08 1.96 7.91 -52.49 -0.42 1.55 15 9 C 0.11 2.78 5.58 -106.82 -0.60 2.19 15 10 C -0.16 -3.97 8.70 -38.87 -0.34 -4.31 15 11 C -0.10 -2.38 10.02 -39.66 -0.40 -2.78 15 12 C -0.23 -5.03 9.30 -39.29 -0.37 -5.39 15 13 C -0.11 -2.29 4.92 -104.70 -0.52 -2.81 15 14 C 0.15 2.66 3.49 -70.01 -0.24 2.42 15 15 H 0.11 1.81 8.00 -51.93 -0.42 1.40 15 16 N -0.83 -13.05 8.81 -6.65 -0.06 -13.11 15 17 C 0.50 9.09 7.55 36.01 0.27 9.37 15 18 O -0.52 -10.42 17.01 -18.75 -0.32 -10.74 15 19 O -0.51 -8.10 13.42 -39.25 -0.53 -8.63 15 20 C -0.20 -4.64 9.41 -38.87 -0.37 -5.01 15 21 H 0.28 6.48 8.30 -40.82 -0.34 6.14 15 22 H 0.12 3.12 6.15 -52.49 -0.32 2.80 15 23 H 0.09 1.86 8.06 -52.49 -0.42 1.44 15 24 H 0.09 1.74 6.63 -52.49 -0.35 1.39 15 25 H 0.35 5.71 6.91 -39.29 -0.27 5.44 15 26 H 0.35 4.90 9.06 -39.29 -0.36 4.55 15 27 H 0.40 4.38 9.10 45.56 0.41 4.80 15 28 H 0.10 2.15 8.03 -52.49 -0.42 1.73 15 LS Contribution 252.43 15.07 3.80 3.80 Total: -1.00 -28.98 252.43 -6.20 -35.17 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -1.69 Total: 16.58 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -2.98 Total: -16.75 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: 0.55 Total: -32.56 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.85 Total: -19.36 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.03 Total: 13.12 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -28.98 -6.20 -35.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072191079.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.958 kcal (2) G-P(sol) polarization free energy of solvation -28.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds