Wall clock time and date at job start Mon Mar 30 2020 03:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86801 * 120.00214 * 2 1 4 4 H 1.48497 * 109.47065 * 270.00268 * 3 2 1 5 5 H 1.48504 * 109.46827 * 29.99946 * 3 2 1 6 6 H 1.48496 * 109.47214 * 150.00096 * 3 2 1 7 7 C 1.39942 * 119.99848 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99961 * 197.86265 * 7 2 1 9 9 C 1.41399 * 120.00311 * 17.86071 * 7 2 1 10 10 C 1.40731 * 120.23956 * 24.39515 * 9 7 2 11 11 C 1.37599 * 119.74154 * 179.97438 * 10 9 7 12 12 C 1.38661 * 120.25041 * 0.02562 * 11 10 9 13 13 C 1.38607 * 120.49876 * 359.97262 * 12 11 10 14 14 C 1.50701 * 119.87698 * 179.72639 * 13 12 11 15 15 H 1.09000 * 109.47302 * 160.00728 * 14 13 12 16 16 N 1.46901 * 109.46947 * 40.00237 * 14 13 12 17 17 C 1.50701 * 109.47125 * 280.00662 * 14 13 12 18 18 O 1.20828 * 120.00392 * 99.99500 * 17 14 13 19 19 O 1.34229 * 120.00152 * 279.99662 * 17 14 13 20 20 C 1.37643 * 120.25308 * 0.02562 * 13 12 11 21 21 H 0.97000 * 119.99625 * 0.02562 * 1 2 3 22 22 H 1.07997 * 120.13353 * 359.95636 * 10 9 7 23 23 H 1.07999 * 119.87406 * 179.97438 * 11 10 9 24 24 H 1.07994 * 119.74718 * 180.02562 * 12 11 10 25 25 H 1.00903 * 110.99789 * 300.00049 * 16 14 13 26 26 H 1.00895 * 110.99898 * 63.95205 * 16 14 13 27 27 H 0.96695 * 117.00709 * 180.02562 * 19 17 14 28 28 H 1.08001 * 120.13380 * 179.97438 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4397 2.6526 0.7001 6 1 3.5399 1.4401 0.7000 7 6 2.0080 -1.2119 -0.0005 8 1 3.0489 -1.2346 0.2863 9 6 1.3521 -2.4068 -0.3766 10 6 0.2209 -2.3615 -1.2126 11 6 -0.4091 -3.5306 -1.5727 12 6 0.0663 -4.7500 -1.1146 13 6 1.1796 -4.8065 -0.2908 14 6 1.6805 -6.1389 0.2039 15 1 2.7190 -6.0418 0.5207 16 7 1.5890 -7.1287 -0.8777 17 6 0.8396 -6.5902 1.3702 18 8 -0.0381 -7.4036 1.2034 19 8 1.0657 -6.0885 2.5946 20 6 1.8257 -3.6498 0.0821 21 1 -0.4849 0.8401 -0.0004 22 1 -0.1515 -1.4129 -1.5700 23 1 -1.2776 -3.4983 -2.2138 24 1 -0.4342 -5.6626 -1.4026 25 1 0.6353 -7.2369 -1.1890 26 1 2.1944 -6.8816 -1.6461 27 1 0.5010 -6.4084 3.3113 28 1 2.6927 -3.6960 0.7244 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072191079.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:48 Heat of formation + Delta-G solvation = -100.320278 kcal Electronic energy + Delta-G solvation = -14512.287587 eV Core-core repulsion = 11912.469508 eV Total energy + Delta-G solvation = -2599.818079 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.41889 -39.53699 -37.22516 -36.33002 -34.85172 -31.83407 -30.84979 -27.44977 -27.17996 -23.24754 -22.67734 -21.48878 -19.39750 -18.89042 -17.97790 -17.40721 -16.71972 -16.49472 -15.84095 -15.47244 -15.27296 -14.75293 -14.42703 -13.97395 -13.52834 -13.31621 -12.94065 -12.85508 -12.56535 -12.47684 -12.19285 -11.79234 -11.64948 -11.33320 -11.05163 -9.95326 -9.46237 -9.26753 -8.66939 -6.38264 0.78953 0.93703 1.28974 1.39179 1.50950 1.52204 2.11694 2.20389 2.68931 3.57817 3.80274 3.94164 4.12512 4.38104 4.50779 4.56164 5.00221 5.07729 5.22899 5.37726 5.57530 5.60456 5.84855 5.94561 6.04848 6.09593 6.28558 6.44517 6.64134 6.89917 6.96884 7.01713 8.30316 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.042528 B = 0.007487 C = 0.007079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.233436 B = 3738.720196 C = 3954.163931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.035 3.965 3 Si 0.983 3.017 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.256 1.256 7 C -0.496 4.496 8 H 0.080 0.920 9 C 0.078 3.922 10 C -0.185 4.185 11 C -0.108 4.108 12 C -0.230 4.230 13 C -0.099 4.099 14 C 0.153 3.847 15 H 0.129 0.871 16 N -0.819 5.819 17 C 0.497 3.503 18 O -0.539 6.539 19 O -0.510 6.510 20 C -0.211 4.211 21 H 0.288 0.712 22 H 0.102 0.898 23 H 0.110 0.890 24 H 0.110 0.890 25 H 0.350 0.650 26 H 0.365 0.635 27 H 0.426 0.574 28 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.900 -4.810 0.683 5.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.180 4.180 3 Si 0.804 3.196 4 H -0.187 1.187 5 H -0.195 1.195 6 H -0.180 1.180 7 C -0.525 4.525 8 H 0.098 0.902 9 C 0.076 3.924 10 C -0.204 4.204 11 C -0.127 4.127 12 C -0.250 4.250 13 C -0.101 4.101 14 C 0.040 3.960 15 H 0.147 0.853 16 N -0.352 5.352 17 C 0.340 3.660 18 O -0.429 6.429 19 O -0.323 6.323 20 C -0.231 4.231 21 H 0.099 0.901 22 H 0.120 0.880 23 H 0.128 0.872 24 H 0.128 0.872 25 H 0.164 0.836 26 H 0.181 0.819 27 H 0.287 0.713 28 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.986 -5.285 0.897 6.136 hybrid contribution -0.774 1.464 -0.059 1.657 sum 2.211 -3.822 0.838 4.494 Atomic orbital electron populations 1.69877 1.09120 1.30646 1.35545 1.26774 0.95434 1.04629 0.91126 0.85188 0.79139 0.75822 0.79501 1.18729 1.19461 1.17976 1.19868 0.98539 0.92341 1.41799 0.90202 1.17977 0.91888 0.93187 0.89368 1.21368 1.00155 0.97091 1.01804 1.20920 0.99004 0.92928 0.99818 1.20422 1.00429 0.96770 1.07376 1.19879 0.97080 0.93786 0.99318 1.19727 0.99596 0.87783 0.88915 0.85330 1.58807 1.15464 1.46914 1.14021 1.23368 0.81853 0.76579 0.84206 1.90631 1.33169 1.33593 1.85480 1.84525 1.61991 1.66726 1.19035 1.21041 1.04104 0.92033 1.05905 0.90100 0.88049 0.87223 0.87202 0.83576 0.81935 0.71286 0.87551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.69 10.95 21.83 0.24 -42.45 15 2 C 0.04 1.75 5.14 85.26 0.44 2.18 15 3 Si 0.98 37.27 29.60 68.60 2.03 39.30 15 4 H -0.26 -9.68 7.11 99.48 0.71 -8.97 15 5 H -0.27 -9.80 7.11 99.48 0.71 -9.09 15 6 H -0.26 -9.40 7.11 99.48 0.71 -8.69 15 7 C -0.50 -26.00 9.05 23.46 0.21 -25.79 15 8 H 0.08 4.00 7.91 -2.91 -0.02 3.98 15 9 C 0.08 4.10 5.58 -21.29 -0.12 3.98 15 10 C -0.18 -9.54 8.70 22.73 0.20 -9.35 15 11 C -0.11 -4.93 10.02 22.22 0.22 -4.71 15 12 C -0.23 -9.59 9.30 22.46 0.21 -9.38 15 13 C -0.10 -4.00 4.92 -19.92 -0.10 -4.09 15 14 C 0.15 5.05 3.49 43.42 0.15 5.20 15 15 H 0.13 3.82 8.00 -2.39 -0.02 3.80 15 16 N -0.82 -23.59 8.81 -174.95 -1.54 -25.14 15 17 C 0.50 17.00 7.55 71.24 0.54 17.54 15 18 O -0.54 -20.41 17.01 21.96 0.37 -20.04 15 19 O -0.51 -14.93 13.42 -51.40 -0.69 -15.62 15 20 C -0.21 -9.76 9.41 22.73 0.21 -9.55 15 21 H 0.29 13.47 8.30 -92.71 -0.77 12.70 15 22 H 0.10 5.51 6.15 -2.91 -0.02 5.49 15 23 H 0.11 4.43 8.06 -2.91 -0.02 4.41 15 24 H 0.11 4.07 6.63 -2.91 -0.02 4.05 15 25 H 0.35 10.42 6.91 -89.69 -0.62 9.80 15 26 H 0.36 9.10 9.06 -89.70 -0.81 8.29 15 27 H 0.43 8.16 9.10 -74.06 -0.67 7.48 15 28 H 0.11 4.62 8.03 -2.91 -0.02 4.59 15 Total: -1.00 -61.57 252.43 1.50 -60.07 By element: Atomic # 1 Polarization: 38.73 SS G_CDS: -0.88 Total: 37.85 kcal Atomic # 6 Polarization: -35.94 SS G_CDS: 1.97 Total: -33.98 kcal Atomic # 7 Polarization: -66.28 SS G_CDS: -1.30 Total: -67.59 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -0.32 Total: -35.66 kcal Atomic # 14 Polarization: 37.27 SS G_CDS: 2.03 Total: 39.30 kcal Total: -61.57 1.50 -60.07 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072191079.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.250 kcal (2) G-P(sol) polarization free energy of solvation -61.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds