Wall clock time and date at job start Mon Mar 30 2020 02:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41123 * 126.71154 * 2 1 4 4 C 1.36677 * 103.87885 * 180.26404 * 3 2 1 5 5 C 1.48049 * 126.91722 * 179.97438 * 4 3 2 6 6 N 1.31384 * 126.22187 * 359.68450 * 5 4 3 7 7 O 1.21264 * 110.50471 * 179.86726 * 6 5 4 8 8 C 1.34748 * 109.79073 * 0.40375 * 7 6 5 9 9 C 1.40389 * 126.66562 * 179.73158 * 8 7 6 10 10 H 1.07998 * 120.00282 * 174.34777 * 9 8 7 11 11 C 1.40423 * 119.99985 * 354.34942 * 9 8 7 12 12 N 1.30524 * 120.00052 * 6.01049 * 11 9 8 13 13 Si 1.86804 * 120.00020 * 186.00599 * 11 9 8 14 14 H 1.48502 * 109.46704 * 94.98434 * 13 11 9 15 15 H 1.48497 * 109.47173 * 214.98094 * 13 11 9 16 16 H 1.48496 * 109.47247 * 334.98707 * 13 11 9 17 17 N 1.33153 * 106.67203 * 359.74867 * 8 7 6 18 18 O 1.34505 * 106.17051 * 359.97438 * 4 3 2 19 19 N 1.20892 * 111.46332 * 0.02562 * 18 4 3 20 20 H 1.09003 * 109.47200 * 269.71623 * 1 2 3 21 21 H 1.09006 * 109.47107 * 29.71133 * 1 2 3 22 22 H 1.09000 * 109.47369 * 149.71289 * 1 2 3 23 23 H 1.07995 * 128.06298 * 0.22269 * 3 2 1 24 24 H 0.96995 * 120.00051 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3506 1.1313 0.0000 4 6 3.6103 0.6010 -0.0061 5 6 4.8892 1.3468 -0.0093 6 7 5.0259 2.6535 -0.0126 7 8 6.1997 2.9578 -0.0120 8 6 6.9595 1.8450 -0.0171 9 6 8.3622 1.7877 -0.0234 10 1 8.8642 0.8355 0.0651 11 6 9.1127 2.9684 -0.1446 12 7 8.5123 4.1273 -0.1334 13 14 10.9702 2.8804 -0.3219 14 1 11.3325 2.9219 -1.7614 15 1 11.5894 4.0346 0.3778 16 1 11.4652 1.6149 0.2769 17 7 6.1215 0.8103 -0.0153 18 8 3.4543 -0.7350 -0.0086 19 7 2.2855 -1.0438 -0.0053 20 1 -0.3634 -0.0051 1.0277 21 1 -0.3634 0.8926 -0.5094 22 1 -0.3634 -0.8874 -0.5183 23 1 2.0670 2.1734 0.0033 24 1 9.0307 4.9428 -0.2168 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074275251.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:55 Heat of formation + Delta-G solvation = 85.049467 kcal Electronic energy + Delta-G solvation = -14053.048993 eV Core-core repulsion = 11357.728806 eV Total energy + Delta-G solvation = -2695.320187 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -45.97752 -45.23259 -36.19068 -36.13028 -35.85414 -33.52721 -31.74648 -29.59733 -28.61608 -25.40853 -24.36016 -23.19214 -21.68563 -20.01351 -18.80344 -18.27901 -17.98355 -17.38077 -16.74583 -16.05496 -15.24872 -14.56124 -14.20218 -14.11139 -13.79668 -13.59813 -13.39204 -13.10967 -12.65152 -12.47792 -12.26970 -11.95805 -11.72871 -11.25037 -11.11451 -10.88751 -10.07548 -9.01774 -7.19965 -0.21766 0.91021 1.08789 1.43133 1.55479 1.61583 1.64196 2.04540 2.15974 2.90291 2.97103 3.12158 3.16614 3.74746 3.87387 4.18022 4.48681 4.71818 4.76071 4.85136 4.89579 5.02787 5.22074 5.69537 5.93597 6.10321 6.35602 7.00974 7.94937 8.06585 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.091628 B = 0.006103 C = 0.005743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 305.509496 B = 4586.974570 C = 4873.953044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.034 3.966 3 C -0.189 4.189 4 C 0.052 3.948 5 C 0.220 3.780 6 N -0.446 5.446 7 O 0.032 5.968 8 C 0.274 3.726 9 C -0.420 4.420 10 H 0.127 0.873 11 C 0.030 3.970 12 N -0.786 5.786 13 Si 1.024 2.976 14 H -0.255 1.255 15 H -0.256 1.256 16 H -0.248 1.248 17 N -0.627 5.627 18 O 0.084 5.916 19 N -0.381 5.381 20 H 0.101 0.899 21 H 0.108 0.892 22 H 0.087 0.913 23 H 0.197 0.803 24 H 0.310 0.690 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.501 -0.728 -0.240 5.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.125 4.125 3 C -0.212 4.212 4 C -0.013 4.013 5 C -0.052 4.052 6 N -0.180 5.180 7 O -0.016 6.016 8 C 0.088 3.912 9 C -0.457 4.457 10 H 0.145 0.855 11 C -0.193 4.193 12 N -0.413 5.413 13 Si 0.840 3.160 14 H -0.179 1.179 15 H -0.180 1.180 16 H -0.171 1.171 17 N -0.373 5.373 18 O 0.023 5.977 19 N -0.091 5.091 20 H 0.119 0.881 21 H 0.127 0.873 22 H 0.106 0.894 23 H 0.214 0.786 24 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.404 -1.707 -0.244 6.632 hybrid contribution 0.882 0.928 -0.030 1.280 sum -5.522 -0.780 -0.274 5.583 Atomic orbital electron populations 1.20438 0.81552 1.05584 1.05199 1.24265 1.01077 0.87067 1.00123 1.22918 0.88771 1.02678 1.06876 1.20649 0.91938 0.83607 1.05104 1.22105 0.91173 0.88322 1.03555 1.74580 0.99765 1.13735 1.29885 1.85483 1.09885 1.34040 1.72159 1.24696 0.96267 0.78236 0.92022 1.19263 0.84428 0.97792 1.44213 0.85523 1.27400 1.08788 0.92740 0.90366 1.69662 1.42621 1.00464 1.28547 0.84565 0.71030 0.80344 0.80087 1.17940 1.18010 1.17079 1.72514 0.97945 1.28849 1.37978 1.84956 1.22200 1.21707 1.68853 1.73798 0.88904 1.25171 1.21263 0.88081 0.87349 0.89430 0.78571 0.87816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.26 10.47 71.24 0.75 -0.51 14 2 C 0.03 1.03 7.31 43.51 0.32 1.34 14 3 C -0.19 -6.60 11.08 22.61 0.25 -6.35 14 4 C 0.05 2.31 7.43 24.51 0.18 2.49 14 5 C 0.22 11.75 8.05 137.26 1.11 12.85 14 6 N -0.45 -24.47 12.19 -56.06 -0.68 -25.15 14 7 O 0.03 1.87 9.73 64.29 0.63 2.50 14 8 C 0.27 15.73 7.80 85.07 0.66 16.39 14 9 C -0.42 -21.65 9.48 23.33 0.22 -21.43 14 10 H 0.13 6.10 7.86 -2.91 -0.02 6.08 14 11 C 0.03 1.38 5.50 85.42 0.47 1.85 14 12 N -0.79 -38.01 12.08 21.90 0.26 -37.75 14 13 Si 1.02 32.80 29.57 68.60 2.03 34.83 14 14 H -0.26 -7.86 7.11 99.48 0.71 -7.15 14 15 H -0.26 -7.60 7.11 99.48 0.71 -6.89 14 16 H -0.25 -7.64 7.11 99.48 0.71 -6.94 14 17 N -0.63 -36.02 11.64 -305.16 -3.55 -39.57 14 18 O 0.08 3.67 11.22 67.18 0.75 4.42 14 19 N -0.38 -14.29 12.05 -48.93 -0.59 -14.88 14 20 H 0.10 1.46 8.14 -2.39 -0.02 1.44 14 21 H 0.11 1.41 8.14 -2.38 -0.02 1.40 14 22 H 0.09 1.41 8.14 -2.39 -0.02 1.39 14 23 H 0.20 5.87 8.06 -2.91 -0.02 5.85 14 24 H 0.31 12.91 8.29 -92.71 -0.77 12.14 14 Total: -1.00 -65.70 235.55 4.05 -61.65 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: 1.25 Total: 7.32 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: 3.96 Total: 6.64 kcal Atomic # 7 Polarization: -112.79 SS G_CDS: -4.56 Total: -117.35 kcal Atomic # 8 Polarization: 5.54 SS G_CDS: 1.38 Total: 6.92 kcal Atomic # 14 Polarization: 32.80 SS G_CDS: 2.03 Total: 34.83 kcal Total: -65.70 4.05 -61.65 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074275251.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.695 kcal (2) G-P(sol) polarization free energy of solvation -65.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds