Wall clock time and date at job start Mon Mar 30 2020 02:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30513 * 1 3 3 Si 1.86792 * 120.00191 * 2 1 4 4 H 1.48501 * 109.47624 * 274.98072 * 3 2 1 5 5 H 1.48497 * 109.47327 * 34.98379 * 3 2 1 6 6 H 1.48503 * 109.47403 * 154.98250 * 3 2 1 7 7 C 1.40469 * 119.99754 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99770 * 186.00512 * 7 2 1 9 9 C 1.40333 * 119.99881 * 6.00096 * 7 2 1 10 10 N 1.33333 * 126.79262 * 174.33008 * 9 7 2 11 11 C 1.33568 * 105.51578 * 180.02562 * 10 9 7 12 12 C 1.50701 * 126.07259 * 180.02562 * 11 10 9 13 13 C 1.50708 * 109.47054 * 90.00260 * 12 11 10 14 14 N 1.30249 * 125.61740 * 89.99675 * 13 12 11 15 15 C 1.34478 * 108.70029 * 179.97438 * 14 13 12 16 16 C 1.34333 * 107.66834 * 0.02562 * 15 14 13 17 17 O 1.33963 * 125.61945 * 269.97604 * 13 12 11 18 18 N 1.30453 * 107.85335 * 0.26738 * 11 10 9 19 19 O 1.21280 * 110.68534 * 359.53666 * 18 11 10 20 20 H 0.96996 * 119.99586 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47239 * 330.00343 * 12 11 10 22 22 H 1.09005 * 109.47110 * 209.99793 * 12 11 10 23 23 H 1.07999 * 126.16802 * 179.97438 * 15 14 13 24 24 H 1.07995 * 126.44465 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3051 0.0000 0.0000 3 14 2.2391 1.6176 0.0000 4 1 2.3815 2.1072 -1.3948 5 1 1.4933 2.6199 0.8027 6 1 3.5854 1.4120 0.5921 7 6 2.0074 -1.2165 -0.0005 8 1 3.0829 -1.2191 0.0973 9 6 1.3115 -2.4284 -0.1281 10 7 1.8426 -3.6453 -0.2504 11 6 0.8044 -4.4807 -0.3416 12 6 0.8811 -5.9780 -0.4944 13 6 0.8989 -6.6218 0.8681 14 7 -0.1496 -6.9988 1.5426 15 6 0.2564 -7.5293 2.7097 16 6 1.5980 -7.4695 2.7400 17 8 1.9957 -6.9009 1.5849 18 7 -0.2876 -3.7698 -0.2801 19 8 -0.0258 -2.5926 -0.1521 20 1 -0.4849 0.8400 0.0004 21 1 1.7913 -6.2421 -1.0329 22 1 0.0136 -6.3313 -1.0519 23 1 -0.3813 -7.9304 3.4836 24 1 2.2376 -7.8125 3.5397 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074275253.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:05 Heat of formation + Delta-G solvation = 43.788679 kcal Electronic energy + Delta-G solvation = -14171.055566 eV Core-core repulsion = 11473.946177 eV Total energy + Delta-G solvation = -2697.109389 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -45.13985 -44.30612 -36.37452 -36.10114 -35.71966 -33.59316 -31.79446 -28.97723 -28.45586 -23.88465 -23.50634 -23.33811 -22.10489 -19.75118 -18.50060 -17.90409 -17.64207 -17.33788 -16.82892 -16.12148 -15.32410 -15.11201 -14.70018 -14.09031 -13.78272 -13.53217 -13.25377 -13.06867 -12.39422 -12.20313 -11.96594 -11.93658 -11.64212 -11.47638 -11.05448 -10.39476 -9.90516 -8.97859 -7.12601 0.39124 0.93988 1.40419 1.41574 1.61973 1.67554 1.77240 2.08404 2.15182 2.95560 3.13647 3.18431 3.43274 3.80534 4.10670 4.14881 4.38543 4.63704 4.77147 4.92288 4.93730 5.24321 5.40060 5.82503 6.02605 6.24338 6.41728 6.71582 8.04073 8.23568 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.054316 B = 0.006758 C = 0.006550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.375124 B = 4142.373063 C = 4273.793537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.027 3.973 3 Si 1.024 2.976 4 H -0.254 1.254 5 H -0.259 1.259 6 H -0.247 1.247 7 C -0.431 4.431 8 H 0.124 0.876 9 C 0.269 3.731 10 N -0.631 5.631 11 C 0.164 3.836 12 C 0.082 3.918 13 C 0.184 3.816 14 N -0.506 5.506 15 C -0.068 4.068 16 C -0.065 4.065 17 O -0.210 6.210 18 N -0.481 5.481 19 O 0.015 5.985 20 H 0.307 0.693 21 H 0.136 0.864 22 H 0.136 0.864 23 H 0.215 0.785 24 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.203 -5.871 3.551 8.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.195 4.195 3 Si 0.840 3.160 4 H -0.178 1.178 5 H -0.183 1.183 6 H -0.170 1.170 7 C -0.468 4.468 8 H 0.142 0.858 9 C 0.081 3.919 10 N -0.377 5.377 11 C -0.112 4.112 12 C 0.043 3.957 13 C -0.024 4.024 14 N -0.236 5.236 15 C -0.206 4.206 16 C -0.135 4.135 17 O -0.096 6.096 18 N -0.215 5.215 19 O -0.028 6.028 20 H 0.118 0.882 21 H 0.154 0.846 22 H 0.154 0.846 23 H 0.232 0.768 24 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 2.990 -6.261 3.243 7.659 hybrid contribution 0.578 0.605 0.426 0.938 sum 3.568 -5.656 3.668 7.628 Atomic orbital electron populations 1.69702 1.09828 1.33076 1.29528 1.27446 0.95913 1.05927 0.90208 0.84572 0.78736 0.72566 0.80123 1.17793 1.18281 1.16983 1.19165 0.96194 0.86163 1.45295 0.85846 1.24858 0.80106 0.95172 0.91809 1.72235 1.28987 0.99085 1.37362 1.25212 0.85884 0.98843 1.01229 1.18101 1.07877 0.82351 0.87347 1.25898 0.78992 1.00297 0.97171 1.70453 1.31030 1.15207 1.06936 1.23997 0.94963 1.04783 0.96855 1.26047 0.97591 1.00934 0.88914 1.84487 1.37740 1.59925 1.27430 1.74310 1.25433 0.91261 1.30475 1.85495 1.26352 1.19165 1.71814 0.88174 0.84611 0.84635 0.76830 0.71990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -40.75 12.09 21.91 0.26 -40.48 14 2 C 0.03 1.30 5.50 85.43 0.47 1.77 14 3 Si 1.02 34.39 29.57 68.60 2.03 36.42 14 4 H -0.25 -8.12 7.11 99.48 0.71 -7.41 14 5 H -0.26 -8.12 7.11 99.48 0.71 -7.41 14 6 H -0.25 -7.89 7.11 99.48 0.71 -7.18 14 7 C -0.43 -23.03 9.47 23.32 0.22 -22.80 14 8 H 0.12 6.13 7.86 -2.91 -0.02 6.11 14 9 C 0.27 15.84 7.81 85.06 0.66 16.51 14 10 N -0.63 -35.54 11.61 -305.21 -3.54 -39.09 14 11 C 0.16 8.47 7.41 138.61 1.03 9.50 14 12 C 0.08 3.19 6.47 29.10 0.19 3.38 14 13 C 0.18 7.15 7.58 88.35 0.67 7.82 14 14 N -0.51 -19.51 11.29 -303.83 -3.43 -22.94 14 15 C -0.07 -1.97 11.89 83.40 0.99 -0.98 14 16 C -0.07 -1.68 12.18 66.93 0.81 -0.87 14 17 O -0.21 -7.41 10.77 -3.65 -0.04 -7.45 14 18 N -0.48 -27.68 12.15 -56.62 -0.69 -28.37 14 19 O 0.02 0.93 9.77 64.21 0.63 1.56 14 20 H 0.31 13.67 8.29 -92.71 -0.77 12.90 14 21 H 0.14 4.43 8.14 -2.39 -0.02 4.41 14 22 H 0.14 4.66 8.14 -2.38 -0.02 4.64 14 23 H 0.22 4.35 8.06 -2.91 -0.02 4.33 14 24 H 0.26 3.55 8.06 -2.91 -0.02 3.53 14 Total: -1.00 -73.62 235.42 1.51 -72.11 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 1.24 Total: 13.91 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: 5.05 Total: 14.33 kcal Atomic # 7 Polarization: -123.48 SS G_CDS: -7.40 Total: -130.88 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: 0.59 Total: -5.89 kcal Atomic # 14 Polarization: 34.39 SS G_CDS: 2.03 Total: 36.42 kcal Total: -73.62 1.51 -72.11 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074275253.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.900 kcal (2) G-P(sol) polarization free energy of solvation -73.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds