Wall clock time and date at job start Mon Mar 30 2020 02:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35264 * 128.03815 * 2 1 4 4 O 1.34042 * 106.68964 * 180.25544 * 3 2 1 5 5 N 1.20902 * 111.86584 * 359.72479 * 4 3 2 6 6 C 1.31059 * 111.41481 * 359.97438 * 5 4 3 7 7 C 1.48148 * 126.94972 * 180.02562 * 6 5 4 8 8 N 1.31592 * 126.40946 * 0.36544 * 7 6 5 9 9 C 1.35558 * 105.54305 * 180.10628 * 8 7 6 10 10 C 1.41795 * 126.45371 * 179.84543 * 9 8 7 11 11 H 1.08000 * 119.99274 * 359.71077 * 10 9 8 12 12 C 1.39943 * 120.00064 * 179.71187 * 10 9 8 13 13 N 1.30749 * 120.00163 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99680 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47414 * 59.99826 * 14 12 10 16 16 H 1.48500 * 109.47052 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.47035 * 299.99833 * 14 12 10 18 18 N 1.31914 * 107.09794 * 359.58372 * 9 8 7 19 19 O 1.21279 * 110.07299 * 0.26035 * 18 9 8 20 20 H 1.08994 * 109.47221 * 270.17995 * 1 2 3 21 21 H 1.09003 * 109.47031 * 30.18467 * 1 2 3 22 22 H 1.09002 * 109.47001 * 150.18210 * 1 2 3 23 23 H 1.07993 * 126.65023 * 359.93814 * 3 2 1 24 24 H 0.96998 * 119.99988 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3405 1.0653 0.0000 4 8 3.5889 0.5774 -0.0057 5 7 3.5999 -0.6316 -0.0037 6 6 2.3842 -1.1211 0.0041 7 6 2.0003 -2.5520 0.0093 8 7 2.8208 -3.5808 0.0137 9 6 2.0263 -4.6791 0.0150 10 6 2.4565 -6.0302 0.0163 11 1 3.5116 -6.2608 0.0117 12 6 1.5141 -7.0647 0.0236 13 7 0.2368 -6.7854 0.0287 14 14 2.0810 -8.8446 0.0262 15 1 2.9038 -9.1003 1.2356 16 1 0.8972 -9.7411 0.0336 17 1 2.8927 -9.1073 -1.1894 18 7 0.7774 -4.2543 0.0204 19 8 0.7501 -3.0418 0.0173 20 1 -0.3633 0.0032 1.0276 21 1 -0.3633 0.8883 -0.5167 22 1 -0.3633 -0.8916 -0.5110 23 1 2.0553 2.1069 -0.0009 24 1 -0.4165 -7.5024 0.0341 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074275259.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:09 Heat of formation + Delta-G solvation = 120.038347 kcal Electronic energy + Delta-G solvation = -14246.029123 eV Core-core repulsion = 11552.226167 eV Total energy + Delta-G solvation = -2693.802956 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -44.82074 -43.36226 -35.01686 -34.58314 -33.20193 -32.03640 -30.00623 -28.03068 -26.63388 -24.06795 -22.15165 -21.03746 -20.72546 -18.32872 -17.53287 -16.73609 -16.19505 -15.78250 -15.10859 -14.47308 -13.71854 -13.18580 -13.11274 -12.98732 -12.14830 -11.50479 -11.33856 -11.13451 -10.98396 -10.86425 -10.47915 -10.24839 -10.22529 -9.30715 -9.25198 -9.15550 -8.09611 -6.69880 -4.72336 1.46231 1.84007 3.01076 3.08895 3.12670 3.27930 3.30922 3.57954 3.94043 4.00652 4.45446 4.96239 5.01458 5.24909 5.44328 5.66772 5.71994 5.75311 5.89886 6.29165 6.44476 6.72958 7.19287 7.56523 8.23310 8.35123 8.42075 8.76847 10.17027 10.32163 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.066522 B = 0.006959 C = 0.006322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.810904 B = 4022.588372 C = 4428.249805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.173 4.173 3 C -0.074 4.074 4 O 0.114 5.886 5 N -0.322 5.322 6 C 0.112 3.888 7 C 0.176 3.824 8 N -0.483 5.483 9 C 0.291 3.709 10 C -0.431 4.431 11 H 0.094 0.906 12 C 0.069 3.931 13 N -0.772 5.772 14 Si 0.928 3.072 15 H -0.264 1.264 16 H -0.278 1.278 17 H -0.264 1.264 18 N -0.412 5.412 19 O 0.038 5.962 20 H 0.077 0.923 21 H 0.072 0.928 22 H 0.082 0.918 23 H 0.220 0.780 24 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.768 11.918 -0.048 11.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.178 4.178 3 C -0.155 4.155 4 O 0.042 5.958 5 N -0.024 5.024 6 C -0.046 4.046 7 C -0.044 4.044 8 N -0.227 5.227 9 C 0.040 3.960 10 C -0.472 4.472 11 H 0.112 0.888 12 C -0.152 4.152 13 N -0.401 5.401 14 Si 0.752 3.248 15 H -0.188 1.188 16 H -0.202 1.202 17 H -0.188 1.188 18 N -0.139 5.139 19 O -0.005 6.005 20 H 0.095 0.905 21 H 0.091 0.909 22 H 0.101 0.899 23 H 0.236 0.764 24 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.106 10.634 -0.044 10.635 hybrid contribution -0.620 -0.531 0.014 0.816 sum -0.726 10.104 -0.030 10.130 Atomic orbital electron populations 1.20180 0.86741 1.03720 1.03181 1.21412 0.99001 0.90517 1.06845 1.25611 0.83030 1.00930 1.05923 1.84852 1.29063 1.15352 1.66556 1.74284 1.20542 0.90562 1.17034 1.19886 0.89031 0.89983 1.05742 1.24202 0.84206 0.91519 1.04457 1.72271 1.31447 0.97673 1.21273 1.22273 0.82876 0.94519 0.96303 1.18437 0.95050 0.85334 1.48357 0.88766 1.25865 0.94381 1.01926 0.93039 1.69846 1.01309 1.34998 1.33920 0.86052 0.78839 0.79997 0.79944 1.18841 1.20243 1.18844 1.75570 1.19577 0.86050 1.32691 1.85360 1.28726 1.18263 1.68199 0.90481 0.90913 0.89890 0.76386 0.90912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 10.21 36.01 0.37 -0.60 14 2 C -0.17 -2.52 6.35 -104.10 -0.66 -3.18 14 3 C -0.07 -0.82 12.24 29.67 0.36 -0.46 14 4 O 0.11 1.67 11.18 17.18 0.19 1.86 14 5 N -0.32 -6.20 12.12 33.29 0.40 -5.79 14 6 C 0.11 2.24 7.28 -82.55 -0.60 1.64 14 7 C 0.18 4.37 8.30 -13.74 -0.11 4.26 14 8 N -0.48 -13.58 11.62 -11.37 -0.13 -13.71 14 9 C 0.29 8.70 7.67 -157.67 -1.21 7.49 14 10 C -0.43 -12.49 9.52 -37.58 -0.36 -12.84 14 11 H 0.09 2.60 7.85 -52.49 -0.41 2.18 14 12 C 0.07 1.87 5.49 -17.37 -0.10 1.77 14 13 N -0.77 -21.72 11.97 55.54 0.67 -21.05 14 14 Si 0.93 19.69 29.56 -169.99 -5.02 14.66 14 15 H -0.26 -5.48 7.11 56.52 0.40 -5.08 14 16 H -0.28 -5.66 7.11 56.52 0.40 -5.26 14 17 H -0.26 -5.48 7.11 56.52 0.40 -5.08 14 18 N -0.41 -12.14 10.46 30.27 0.32 -11.82 14 19 O 0.04 0.98 10.17 16.45 0.17 1.15 14 20 H 0.08 0.85 8.14 -51.93 -0.42 0.43 14 21 H 0.07 0.62 8.14 -51.93 -0.42 0.19 14 22 H 0.08 1.18 7.18 -51.93 -0.37 0.80 14 23 H 0.22 1.17 8.06 -52.49 -0.42 0.74 14 24 H 0.28 7.12 8.29 -40.82 -0.34 6.78 14 LS Contribution 233.12 15.07 3.51 3.51 Total: -1.00 -34.02 233.12 -3.39 -37.42 By element: Atomic # 1 Polarization: -3.11 SS G_CDS: -1.19 Total: -4.30 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -2.31 Total: -1.92 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: 1.25 Total: -52.38 kcal Atomic # 8 Polarization: 2.65 SS G_CDS: 0.36 Total: 3.01 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -34.02 -3.39 -37.42 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074275259.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.455 kcal (2) G-P(sol) polarization free energy of solvation -34.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds