Wall clock time and date at job start Mon Mar 30 2020 02:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33059 * 126.01026 * 2 1 4 4 C 1.32807 * 108.64974 * 179.87180 * 3 2 1 5 5 C 1.39797 * 125.80036 * 180.15814 * 4 3 2 6 6 H 1.08002 * 120.00505 * 180.28376 * 5 4 3 7 7 C 1.40339 * 120.00012 * 0.27689 * 5 4 3 8 8 N 1.30623 * 119.99957 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00117 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47201 * 60.00197 * 9 7 5 11 11 H 1.48504 * 109.47149 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47361 * 300.00053 * 9 7 5 13 13 O 1.34954 * 108.40186 * 0.39776 * 4 3 2 14 14 C 1.34592 * 107.60770 * 359.75761 * 13 4 3 15 15 C 1.50698 * 126.32205 * 179.97438 * 14 13 4 16 16 F 1.39893 * 109.47346 * 270.02628 * 15 14 13 17 17 F 1.39897 * 109.46823 * 30.02614 * 15 14 13 18 18 F 1.39897 * 109.47133 * 150.02275 * 15 14 13 19 19 H 1.09001 * 109.46953 * 269.68580 * 1 2 3 20 20 H 1.09000 * 109.47318 * 29.68178 * 1 2 3 21 21 H 1.09000 * 109.47161 * 149.68809 * 1 2 3 22 22 H 0.97000 * 120.00074 * 180.02562 * 8 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2894 1.0763 0.0000 4 6 3.5569 0.6801 0.0028 5 6 4.6757 1.5182 0.0069 6 1 5.6688 1.0936 0.0043 7 6 4.5086 2.9116 0.0141 8 7 3.3077 3.4254 0.0176 9 14 6.0036 4.0317 0.0188 10 1 6.8186 3.7745 -1.1956 11 1 5.5603 5.4490 0.0270 12 1 6.8204 3.7620 1.2294 13 8 3.5815 -0.6692 -0.0043 14 6 2.3062 -1.0997 -0.0061 15 6 1.8488 -2.5355 -0.0140 16 9 1.7071 -2.9726 -1.3353 17 9 2.7956 -3.3301 0.6411 18 9 0.6189 -2.6367 0.6451 19 1 -0.3633 -0.0056 1.0277 20 1 -0.3634 0.8928 -0.5089 21 1 -0.3633 -0.8872 -0.5187 22 1 3.1921 4.3884 0.0223 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074275335.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:51 Heat of formation + Delta-G solvation = -148.094941 kcal Electronic energy + Delta-G solvation = -15109.393682 eV Core-core repulsion = 11829.814103 eV Total energy + Delta-G solvation = -3279.579579 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.040 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.46939 -47.04189 -46.94187 -41.26461 -34.16126 -33.50959 -30.56818 -27.67487 -27.25212 -23.28673 -21.00463 -19.83910 -17.90224 -17.85054 -17.47504 -17.07005 -15.50832 -14.88627 -14.16048 -13.93009 -13.83917 -13.48158 -13.27438 -13.17197 -13.10065 -12.48077 -12.30990 -12.07680 -11.74619 -11.45368 -11.15343 -10.69112 -10.57178 -9.86955 -9.22065 -8.52871 -7.77708 -6.95552 -4.99845 2.53007 2.92294 2.95921 2.99675 3.20351 3.68939 4.06293 4.14676 4.84513 5.05618 5.15946 5.49553 5.75979 5.88053 6.25751 6.42282 6.65945 6.83455 7.32297 7.59023 7.86446 8.21514 8.44715 9.61086 9.95822 Molecular weight = 221.04amu Principal moments of inertia in cm(-1) A = 0.052751 B = 0.008651 C = 0.007804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.666107 B = 3236.014687 C = 3586.894100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.111 3.889 3 N -0.532 5.532 4 C 0.350 3.650 5 C -0.417 4.417 6 H 0.100 0.900 7 C 0.072 3.928 8 N -0.712 5.712 9 Si 0.935 3.065 10 H -0.260 1.260 11 H -0.273 1.273 12 H -0.260 1.260 13 O -0.228 6.228 14 C -0.329 4.329 15 C 0.576 3.424 16 F -0.187 7.187 17 F -0.186 7.186 18 F -0.176 7.176 19 H 0.070 0.930 20 H 0.072 0.928 21 H 0.062 0.938 22 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.703 -3.202 0.045 3.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.022 4.022 3 N -0.262 5.262 4 C 0.171 3.829 5 C -0.450 4.450 6 H 0.118 0.882 7 C -0.155 4.155 8 N -0.335 5.335 9 Si 0.757 3.243 10 H -0.184 1.184 11 H -0.197 1.197 12 H -0.184 1.184 13 O -0.126 6.126 14 C -0.384 4.384 15 C 0.522 3.478 16 F -0.168 7.168 17 F -0.167 7.167 18 F -0.158 7.158 19 H 0.089 0.911 20 H 0.091 0.909 21 H 0.081 0.919 22 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.967 -2.385 0.042 3.092 hybrid contribution 0.739 -0.515 0.004 0.901 sum -1.227 -2.900 0.046 3.150 Atomic orbital electron populations 1.20169 0.88645 1.02191 1.02157 1.21666 0.96677 0.88754 0.95149 1.71508 0.99393 1.25573 1.29679 1.22325 0.93699 0.76082 0.90781 1.18347 0.91368 0.89386 1.45884 0.88232 1.25998 0.98149 0.98247 0.93142 1.69960 1.22834 1.14194 1.26487 0.85930 0.80075 0.77942 0.80343 1.18433 1.19738 1.18437 1.84371 1.26042 1.24923 1.77302 1.21401 0.85356 0.92016 1.39613 1.16601 0.74094 0.83939 0.73196 1.93176 1.95681 1.91069 1.36902 1.93137 1.65207 1.76883 1.81494 1.93125 1.44822 1.96521 1.81311 0.91104 0.90912 0.91921 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.44 9.39 36.01 0.34 -1.10 14 2 C 0.11 2.77 7.07 -82.88 -0.59 2.18 14 3 N -0.53 -14.98 9.43 -9.64 -0.09 -15.07 14 4 C 0.35 9.90 7.74 -16.55 -0.13 9.78 14 5 C -0.42 -10.95 9.45 -38.21 -0.36 -11.31 14 6 H 0.10 2.40 7.85 -52.49 -0.41 1.99 14 7 C 0.07 1.75 5.50 -17.28 -0.10 1.66 14 8 N -0.71 -18.22 11.88 55.57 0.66 -17.56 14 9 Si 0.93 17.45 29.56 -169.99 -5.03 12.42 14 10 H -0.26 -4.76 7.11 56.52 0.40 -4.36 14 11 H -0.27 -4.90 7.11 56.52 0.40 -4.50 14 12 H -0.26 -4.76 7.11 56.52 0.40 -4.36 14 13 O -0.23 -6.29 10.81 3.10 0.03 -6.26 14 14 C -0.33 -8.21 6.73 -35.13 -0.24 -8.44 14 15 C 0.58 12.16 3.41 36.00 0.12 12.28 14 16 F -0.19 -3.78 17.30 2.25 0.04 -3.74 14 17 F -0.19 -3.88 17.30 2.25 0.04 -3.84 14 18 F -0.18 -3.34 15.25 2.25 0.03 -3.31 14 19 H 0.07 1.26 8.14 -51.93 -0.42 0.83 14 20 H 0.07 1.36 8.14 -51.93 -0.42 0.93 14 21 H 0.06 1.08 7.12 -51.93 -0.37 0.71 14 22 H 0.29 6.49 8.29 -40.82 -0.34 6.15 14 LS Contribution 221.67 15.07 3.34 3.34 Total: -1.00 -28.89 221.67 -2.68 -31.57 By element: Atomic # 1 Polarization: -1.85 SS G_CDS: -0.76 Total: -2.61 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -0.95 Total: 5.04 kcal Atomic # 7 Polarization: -33.20 SS G_CDS: 0.57 Total: -32.63 kcal Atomic # 8 Polarization: -6.29 SS G_CDS: 0.03 Total: -6.26 kcal Atomic # 9 Polarization: -10.99 SS G_CDS: 0.11 Total: -10.88 kcal Atomic # 14 Polarization: 17.45 SS G_CDS: -5.03 Total: 12.42 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -28.89 -2.68 -31.57 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074275335.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.527 kcal (2) G-P(sol) polarization free energy of solvation -28.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds