Wall clock time and date at job start Mon Mar 30 2020 02:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33059 * 126.01026 * 2 1 4 4 C 1.32807 * 108.64974 * 179.87180 * 3 2 1 5 5 C 1.39797 * 125.80036 * 180.15814 * 4 3 2 6 6 H 1.08002 * 120.00505 * 180.28376 * 5 4 3 7 7 C 1.40339 * 120.00012 * 0.27689 * 5 4 3 8 8 N 1.30623 * 119.99957 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00117 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47201 * 60.00197 * 9 7 5 11 11 H 1.48504 * 109.47149 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47361 * 300.00053 * 9 7 5 13 13 O 1.34954 * 108.40186 * 0.39776 * 4 3 2 14 14 C 1.34592 * 107.60770 * 359.75761 * 13 4 3 15 15 C 1.50698 * 126.32205 * 179.97438 * 14 13 4 16 16 F 1.39893 * 109.47346 * 270.02628 * 15 14 13 17 17 F 1.39897 * 109.46823 * 30.02614 * 15 14 13 18 18 F 1.39897 * 109.47133 * 150.02275 * 15 14 13 19 19 H 1.09001 * 109.46953 * 269.68580 * 1 2 3 20 20 H 1.09000 * 109.47318 * 29.68178 * 1 2 3 21 21 H 1.09000 * 109.47161 * 149.68809 * 1 2 3 22 22 H 0.97000 * 120.00074 * 180.02562 * 8 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2894 1.0763 0.0000 4 6 3.5569 0.6801 0.0028 5 6 4.6757 1.5182 0.0069 6 1 5.6688 1.0936 0.0043 7 6 4.5086 2.9116 0.0141 8 7 3.3077 3.4254 0.0176 9 14 6.0036 4.0317 0.0188 10 1 6.8186 3.7745 -1.1956 11 1 5.5603 5.4490 0.0270 12 1 6.8204 3.7620 1.2294 13 8 3.5815 -0.6692 -0.0043 14 6 2.3062 -1.0997 -0.0061 15 6 1.8488 -2.5355 -0.0140 16 9 1.7071 -2.9726 -1.3353 17 9 2.7956 -3.3301 0.6411 18 9 0.6189 -2.6367 0.6451 19 1 -0.3633 -0.0056 1.0277 20 1 -0.3634 0.8928 -0.5089 21 1 -0.3633 -0.8872 -0.5187 22 1 3.1921 4.3884 0.0223 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074275335.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:51 Heat of formation + Delta-G solvation = -167.874863 kcal Electronic energy + Delta-G solvation = -15110.251403 eV Core-core repulsion = 11829.814103 eV Total energy + Delta-G solvation = -3280.437301 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.040 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -51.13315 -48.67438 -48.61469 -43.24376 -36.07452 -35.42735 -32.46903 -29.45422 -29.08436 -25.09814 -22.95956 -21.70544 -19.73025 -19.54519 -19.26261 -18.87428 -17.34123 -16.88227 -15.88391 -15.55341 -15.49148 -15.12954 -14.98894 -14.82341 -14.81589 -14.11304 -14.04382 -13.74916 -13.42933 -13.03698 -12.98158 -12.49018 -12.03799 -11.68647 -11.09737 -10.55231 -9.73118 -8.78921 -6.99956 0.63276 1.35462 1.46202 1.49772 1.58442 2.11585 2.19678 2.36612 3.09000 3.12959 3.46464 3.70875 3.89042 4.21524 4.74634 4.83703 4.86859 5.01649 5.46238 5.66458 5.93099 6.25512 6.47973 7.61969 8.15791 Molecular weight = 221.04amu Principal moments of inertia in cm(-1) A = 0.052751 B = 0.008651 C = 0.007804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.666107 B = 3236.014687 C = 3586.894100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.097 3.903 3 N -0.566 5.566 4 C 0.314 3.686 5 C -0.440 4.440 6 H 0.111 0.889 7 C 0.029 3.971 8 N -0.749 5.749 9 Si 1.020 2.980 10 H -0.252 1.252 11 H -0.259 1.259 12 H -0.252 1.252 13 O -0.249 6.249 14 C -0.350 4.350 15 C 0.589 3.411 16 F -0.179 7.179 17 F -0.184 7.184 18 F -0.159 7.159 19 H 0.089 0.911 20 H 0.077 0.923 21 H 0.085 0.915 22 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.410 -2.690 0.084 3.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.035 4.035 3 N -0.297 5.297 4 C 0.137 3.863 5 C -0.473 4.473 6 H 0.129 0.871 7 C -0.195 4.195 8 N -0.372 5.372 9 Si 0.836 3.164 10 H -0.176 1.176 11 H -0.183 1.183 12 H -0.176 1.176 13 O -0.148 6.148 14 C -0.405 4.405 15 C 0.535 3.465 16 F -0.161 7.161 17 F -0.165 7.165 18 F -0.141 7.141 19 H 0.107 0.893 20 H 0.096 0.904 21 H 0.103 0.897 22 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.708 -1.908 0.080 2.562 hybrid contribution 0.598 -0.693 -0.007 0.915 sum -1.110 -2.601 0.074 2.829 Atomic orbital electron populations 1.20306 0.85052 1.03541 1.03730 1.22462 0.98967 0.88019 0.94062 1.71458 0.99830 1.27124 1.31326 1.22957 0.94727 0.76624 0.92041 1.18982 0.91559 0.90740 1.45974 0.87077 1.27196 1.01754 0.98846 0.91696 1.70020 1.25493 1.15415 1.26247 0.84706 0.75294 0.75656 0.80720 1.17588 1.18314 1.17582 1.84339 1.27574 1.24950 1.77895 1.22097 0.84675 0.94074 1.39616 1.16166 0.74539 0.82267 0.73566 1.93186 1.95660 1.90761 1.36450 1.93140 1.65373 1.76517 1.81498 1.93156 1.43586 1.96320 1.81000 0.89259 0.90430 0.89666 0.89152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.58 9.39 71.24 0.67 -1.92 14 2 C 0.10 4.86 7.07 41.84 0.30 5.16 14 3 N -0.57 -32.48 9.43 -297.40 -2.80 -35.28 14 4 C 0.31 18.23 7.74 84.92 0.66 18.89 14 5 C -0.44 -23.41 9.45 23.16 0.22 -23.19 14 6 H 0.11 5.40 7.85 -2.91 -0.02 5.38 14 7 C 0.03 1.40 5.50 85.38 0.47 1.87 14 8 N -0.75 -38.40 11.88 21.89 0.26 -38.14 14 9 Si 1.02 34.59 29.56 68.60 2.03 36.61 14 10 H -0.25 -8.19 7.11 99.48 0.71 -7.48 14 11 H -0.26 -8.16 7.11 99.48 0.71 -7.45 14 12 H -0.25 -8.18 7.11 99.48 0.71 -7.48 14 13 O -0.25 -14.00 10.81 -11.83 -0.13 -14.13 14 14 C -0.35 -17.52 6.73 25.15 0.17 -17.35 14 15 C 0.59 24.18 3.41 71.24 0.24 24.42 14 16 F -0.18 -6.98 17.30 44.97 0.78 -6.21 14 17 F -0.18 -7.50 17.30 44.97 0.78 -6.72 14 18 F -0.16 -5.70 15.25 44.97 0.69 -5.01 14 19 H 0.09 2.99 8.14 -2.39 -0.02 2.97 14 20 H 0.08 2.80 8.14 -2.39 -0.02 2.78 14 21 H 0.08 2.75 7.12 -2.39 -0.02 2.73 14 22 H 0.30 13.37 8.29 -92.71 -0.77 12.60 14 Total: -1.00 -62.52 221.67 5.59 -56.93 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: 1.27 Total: 4.05 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: 2.72 Total: 7.89 kcal Atomic # 7 Polarization: -70.87 SS G_CDS: -2.54 Total: -73.42 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.13 Total: -14.13 kcal Atomic # 9 Polarization: -20.18 SS G_CDS: 2.24 Total: -17.94 kcal Atomic # 14 Polarization: 34.59 SS G_CDS: 2.03 Total: 36.61 kcal Total: -62.52 5.59 -56.93 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074275335.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.949 kcal (2) G-P(sol) polarization free energy of solvation -62.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds