Wall clock time and date at job start Mon Mar 30 2020 02:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.30658 * 121.73096 * 2 1 4 4 S 1.75700 * 110.06392 * 179.97438 * 3 2 1 5 5 C 1.76373 * 90.74616 * 359.97438 * 4 3 2 6 6 C 1.36471 * 140.88740 * 180.02562 * 5 4 3 7 7 C 1.46361 * 106.48453 * 179.97438 * 6 5 4 8 8 C 1.41335 * 127.00723 * 179.97438 * 7 6 5 9 9 H 1.07998 * 119.99988 * 162.20928 * 8 7 6 10 10 C 1.39634 * 119.99617 * 342.21376 * 8 7 6 11 11 N 1.31073 * 120.00255 * 336.98766 * 10 8 7 12 12 Si 1.86801 * 119.99916 * 156.71694 * 10 8 7 13 13 H 1.48501 * 109.47527 * 180.27197 * 12 10 8 14 14 H 1.48506 * 109.46757 * 300.27164 * 12 10 8 15 15 H 1.48498 * 109.47131 * 60.26906 * 12 10 8 16 16 C 1.39131 * 105.98958 * 0.26293 * 7 6 5 17 17 C 1.50693 * 125.81418 * 179.73890 * 16 7 6 18 18 N 1.36166 * 109.32490 * 0.02562 * 5 4 3 19 19 H 1.09002 * 109.46994 * 90.02831 * 1 2 3 20 20 H 1.09005 * 109.46977 * 210.02695 * 1 2 3 21 21 H 1.09000 * 109.47284 * 330.02473 * 1 2 3 22 22 H 1.07998 * 124.97335 * 359.97438 * 3 2 1 23 23 H 1.08001 * 126.76123 * 359.97438 * 6 5 4 24 24 H 0.96993 * 119.99928 * 353.69873 * 11 10 8 25 25 H 1.09009 * 109.47181 * 90.02433 * 17 16 7 26 26 H 1.09003 * 109.47426 * 210.01952 * 17 16 7 27 27 H 1.09002 * 109.47594 * 330.02284 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1941 1.1113 0.0000 4 16 3.9148 0.7560 0.0007 5 6 3.5807 -0.9758 0.0018 6 6 4.2254 -2.1786 0.0032 7 6 3.1846 -3.2077 0.0038 8 6 3.3733 -4.6084 0.0048 9 1 2.5627 -5.2622 0.2909 10 6 4.6076 -5.1468 -0.3643 11 7 5.4249 -4.4549 -1.1202 12 14 5.0975 -6.8502 0.2256 13 1 6.4473 -7.1853 -0.2951 14 1 5.1202 -6.8723 1.7103 15 1 4.1145 -7.8471 -0.2693 16 6 1.9717 -2.5261 -0.0034 17 6 0.6044 -3.1594 -0.0111 18 7 2.2336 -1.1748 0.0010 19 1 -0.3633 -0.0005 -1.0277 20 1 -0.3633 -0.8898 0.5143 21 1 -0.3634 0.8902 0.5134 22 1 1.7670 2.1032 -0.0004 23 1 5.2934 -2.3396 0.0037 24 1 5.1370 -3.6094 -1.4984 25 1 0.2685 -3.3115 1.0147 26 1 -0.0963 -2.5049 -0.5295 27 1 0.6517 -4.1200 -0.5241 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075396203.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:06 Heat of formation + Delta-G solvation = 37.601150 kcal Electronic energy + Delta-G solvation = -12706.167742 eV Core-core repulsion = 10555.083256 eV Total energy + Delta-G solvation = -2151.084486 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 221.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.23760 -37.23277 -35.00407 -32.64993 -30.57978 -28.86838 -27.87706 -25.79711 -22.79533 -21.77436 -19.51321 -18.88838 -18.40197 -16.43002 -15.85009 -15.56852 -15.30784 -14.88902 -14.38074 -14.25867 -14.08470 -13.58159 -13.39163 -13.26454 -12.80311 -12.71768 -12.00945 -11.94414 -11.91255 -11.54366 -11.40598 -10.82788 -10.52346 -9.25655 -9.03025 -7.89201 -6.20042 0.35183 0.50790 1.05203 1.49565 1.55161 1.63120 1.83442 2.15373 2.19463 2.45094 3.31651 3.84800 4.21787 4.32347 4.48358 4.58540 4.63972 4.69018 4.84214 4.94378 4.97431 5.16524 5.23694 5.29263 5.71679 5.91394 6.13456 6.33063 6.70760 6.95124 7.16953 8.25896 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.040900 B = 0.009400 C = 0.007833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.424134 B = 2978.041667 C = 3573.849015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.075 3.925 3 C -0.258 4.258 4 S 0.061 5.939 5 C -0.054 4.054 6 C -0.238 4.238 7 C 0.041 3.959 8 C -0.544 4.544 9 H 0.072 0.928 10 C -0.002 4.002 11 N -0.849 5.849 12 Si 1.120 2.880 13 H -0.276 1.276 14 H -0.267 1.267 15 H -0.257 1.257 16 C -0.169 4.169 17 C -0.034 4.034 18 N -0.389 5.389 19 H 0.090 0.910 20 H 0.070 0.930 21 H 0.115 0.885 22 H 0.219 0.781 23 H 0.111 0.889 24 H 0.278 0.722 25 H 0.051 0.949 26 H 0.068 0.932 27 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.221 7.235 2.043 11.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.035 4.035 3 C -0.395 4.395 4 S 0.317 5.683 5 C -0.274 4.274 6 C -0.275 4.275 7 C 0.034 3.966 8 C -0.575 4.575 9 H 0.090 0.910 10 C -0.214 4.214 11 N -0.475 5.475 12 Si 0.938 3.062 13 H -0.201 1.201 14 H -0.192 1.192 15 H -0.181 1.181 16 C -0.274 4.274 17 C -0.091 4.091 18 N -0.064 5.064 19 H 0.108 0.892 20 H 0.088 0.912 21 H 0.134 0.866 22 H 0.236 0.764 23 H 0.129 0.871 24 H 0.090 0.910 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.052 7.162 1.997 9.587 hybrid contribution -1.813 0.393 -0.135 1.860 sum -7.865 7.555 1.863 11.064 Atomic orbital electron populations 1.20832 0.84686 1.05185 1.04392 1.19911 0.97575 0.83385 1.02640 1.24575 0.94298 1.02391 1.18243 1.83823 1.06881 0.92251 1.85354 1.23456 0.87858 0.99062 1.17000 1.21496 0.97534 0.89875 1.18622 1.18529 0.89524 0.92965 0.95566 1.19855 1.01310 0.90651 1.45701 0.90988 1.28280 0.92462 1.08763 0.91878 1.70636 1.39032 1.15197 1.22625 0.82970 0.76916 0.69230 0.77098 1.20141 1.19221 1.18099 1.20955 0.97128 0.78516 1.30833 1.19805 0.89520 0.99140 1.00647 1.42082 1.04255 1.05105 1.54957 0.89186 0.91152 0.86611 0.76389 0.87080 0.90968 0.93014 0.91363 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.20 9.32 71.23 0.66 -1.54 15 2 C 0.08 2.62 6.74 41.87 0.28 2.90 15 3 C -0.26 -7.92 10.76 68.13 0.73 -7.19 15 4 S 0.06 2.28 23.37 -56.49 -1.32 0.96 15 5 C -0.05 -2.69 7.71 83.61 0.64 -2.05 15 6 C -0.24 -13.44 9.09 23.97 0.22 -13.23 15 7 C 0.04 2.34 5.69 -20.19 -0.11 2.22 15 8 C -0.54 -31.05 8.91 23.37 0.21 -30.84 15 9 H 0.07 3.94 7.83 -2.91 -0.02 3.91 15 10 C 0.00 -0.09 5.30 85.14 0.45 0.36 15 11 N -0.85 -49.77 12.71 21.78 0.28 -49.49 15 12 Si 1.12 46.23 29.99 68.60 2.06 48.29 15 13 H -0.28 -11.28 7.11 99.48 0.71 -10.57 15 14 H -0.27 -10.46 7.11 99.48 0.71 -9.75 15 15 H -0.26 -9.58 7.11 99.48 0.71 -8.87 15 16 C -0.17 -8.43 7.23 41.86 0.30 -8.13 15 17 C -0.03 -1.34 9.19 71.23 0.65 -0.68 15 18 N -0.39 -17.94 3.10 -321.89 -1.00 -18.94 15 19 H 0.09 1.92 8.14 -2.39 -0.02 1.90 15 20 H 0.07 1.79 6.20 -2.38 -0.01 1.78 15 21 H 0.12 1.89 8.10 -2.39 -0.02 1.87 15 22 H 0.22 4.44 8.06 -2.91 -0.02 4.42 15 23 H 0.11 6.53 7.00 -2.91 -0.02 6.51 15 24 H 0.28 17.06 6.18 -92.71 -0.57 16.48 15 25 H 0.05 1.90 8.14 -2.38 -0.02 1.88 15 26 H 0.07 2.26 6.39 -2.39 -0.02 2.25 15 27 H 0.06 2.39 7.85 -2.39 -0.02 2.37 15 Total: -1.00 -68.62 244.32 5.43 -63.18 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: 1.37 Total: 14.17 kcal Atomic # 6 Polarization: -62.22 SS G_CDS: 4.04 Total: -58.18 kcal Atomic # 7 Polarization: -67.71 SS G_CDS: -0.72 Total: -68.43 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.06 Total: 48.29 kcal Atomic # 16 Polarization: 2.28 SS G_CDS: -1.32 Total: 0.96 kcal Total: -68.62 5.43 -63.18 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075396203.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.784 kcal (2) G-P(sol) polarization free energy of solvation -68.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds