Wall clock time and date at job start Mon Mar 30 2020 02:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.75699 * 124.97028 * 2 1 4 4 C 1.76371 * 90.74776 * 179.97438 * 3 2 1 5 5 C 1.36472 * 140.88718 * 180.02562 * 4 3 2 6 6 C 1.46366 * 106.48681 * 179.97438 * 5 4 3 7 7 C 1.41325 * 127.00780 * 179.73781 * 6 5 4 8 8 H 1.07998 * 120.00384 * 180.02562 * 7 6 5 9 9 C 1.39639 * 119.99970 * 0.02666 * 7 6 5 10 10 N 1.31075 * 119.99986 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00043 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47231 * 89.99896 * 11 9 7 13 13 H 1.48500 * 109.47159 * 210.00275 * 11 9 7 14 14 H 1.48506 * 109.47264 * 329.99841 * 11 9 7 15 15 C 1.39130 * 105.98679 * 0.02562 * 6 5 4 16 16 N 1.36177 * 109.32310 * 0.02562 * 4 3 2 17 17 C 1.30660 * 124.96519 * 179.97438 * 2 1 3 18 18 C 1.50699 * 121.73272 * 0.04141 * 17 2 1 19 19 H 1.09003 * 109.46775 * 0.02602 * 1 2 3 20 20 H 1.08999 * 109.47071 * 120.02542 * 1 2 3 21 21 H 1.08994 * 109.47374 * 240.02635 * 1 2 3 22 22 H 1.08000 * 126.75854 * 359.95670 * 5 4 3 23 23 H 0.97000 * 119.99868 * 179.97438 * 10 9 7 24 24 H 1.07995 * 125.81759 * 179.97438 * 15 6 5 25 25 H 1.09001 * 109.47062 * 89.97881 * 18 17 2 26 26 H 1.09006 * 109.47141 * 209.96914 * 18 17 2 27 27 H 1.08998 * 109.47475 * 329.97859 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5140 1.4398 0.0000 4 6 3.9724 0.4478 0.0008 5 6 5.3321 0.5642 0.0016 6 6 5.8656 -0.7988 0.0024 7 6 7.2266 -1.1796 -0.0017 8 1 7.4947 -2.2257 -0.0010 9 6 8.2248 -0.2031 -0.0067 10 7 7.8995 1.0666 -0.0080 11 14 10.0237 -0.7064 -0.0114 12 1 10.4959 -0.8424 -1.4127 13 1 10.8292 0.3292 0.6842 14 1 10.1759 -2.0061 0.6906 15 6 4.7598 -1.6431 0.0014 16 7 3.6222 -0.8682 0.0004 17 6 2.2558 -1.0708 0.0005 18 6 1.6596 -2.4548 0.0002 19 1 -0.3633 1.0277 -0.0005 20 1 -0.3633 -0.5142 -0.8897 21 1 -0.3634 -0.5134 0.8902 22 1 5.9023 1.4814 0.0014 23 1 8.5929 1.7449 -0.0111 24 1 4.7890 -2.7227 0.0012 25 1 1.5162 -2.7884 -1.0276 26 1 2.3333 -3.1407 0.5140 27 1 0.6984 -2.4366 0.5137 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075396230.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:09 Heat of formation + Delta-G solvation = 59.438018 kcal Electronic energy + Delta-G solvation = -12448.876758 eV Core-core repulsion = 10298.739190 eV Total energy + Delta-G solvation = -2150.137569 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 221.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.19644 -35.67238 -33.35149 -30.29814 -29.17394 -27.33100 -26.56042 -23.66393 -20.60686 -19.34930 -17.98552 -17.28188 -16.13168 -14.92876 -14.72430 -13.93987 -13.59336 -13.08898 -12.85495 -12.49514 -12.33660 -12.02889 -11.80799 -11.42383 -11.24842 -11.03025 -10.99013 -10.18671 -10.11399 -9.79251 -9.61703 -9.12232 -8.58090 -7.19615 -6.53219 -5.99937 -4.15978 2.06533 2.38600 2.81802 3.06042 3.14874 3.18930 3.64735 3.98128 4.09586 4.21544 5.24415 5.43968 5.53168 5.67294 5.70970 5.73973 5.83886 6.02722 6.11101 6.42855 6.69870 7.14640 7.16161 7.36429 7.62738 8.05737 8.17019 8.58851 8.75879 9.06543 9.08644 10.41604 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.057619 B = 0.007780 C = 0.006889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.830234 B = 3598.179512 C = 4063.559184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C -0.260 4.260 3 S 0.025 5.975 4 C -0.060 4.060 5 C -0.141 4.141 6 C 0.082 3.918 7 C -0.436 4.436 8 H 0.075 0.925 9 C 0.071 3.929 10 N -0.817 5.817 11 Si 0.917 3.083 12 H -0.271 1.271 13 H -0.279 1.279 14 H -0.265 1.265 15 C -0.194 4.194 16 N -0.391 5.391 17 C 0.104 3.896 18 C -0.091 4.091 19 H 0.061 0.939 20 H 0.063 0.937 21 H 0.063 0.937 22 H 0.165 0.835 23 H 0.275 0.725 24 H 0.138 0.862 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.692 -1.989 0.005 8.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.380 4.380 3 S 0.281 5.719 4 C -0.276 4.276 5 C -0.178 4.178 6 C 0.075 3.925 7 C -0.468 4.468 8 H 0.093 0.907 9 C -0.144 4.144 10 N -0.445 5.445 11 Si 0.742 3.258 12 H -0.197 1.197 13 H -0.204 1.204 14 H -0.189 1.189 15 C -0.317 4.317 16 N -0.066 5.066 17 C -0.009 4.009 18 C -0.150 4.150 19 H 0.080 0.920 20 H 0.082 0.918 21 H 0.082 0.918 22 H 0.182 0.818 23 H 0.086 0.914 24 H 0.156 0.844 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.052 -0.518 0.008 9.067 hybrid contribution 1.168 -1.596 -0.015 1.978 sum -7.884 -2.114 -0.008 8.162 Atomic orbital electron populations 1.19965 0.87742 1.01964 1.01497 1.22526 0.99334 0.94352 1.21816 1.83773 0.93928 1.07242 1.86926 1.23307 0.97990 0.86064 1.20230 1.22575 0.86829 0.99772 1.08587 1.18302 0.91557 0.89464 0.93195 1.18784 0.88957 0.93873 1.45177 0.90678 1.25809 1.01382 0.94465 0.92710 1.69751 1.34819 1.00726 1.39199 0.86178 0.81526 0.79143 0.78936 1.19688 1.20395 1.18874 1.21714 0.81653 0.94446 1.33896 1.41744 1.02448 1.06320 1.56064 1.18844 0.82485 0.96829 1.02736 1.20533 1.00527 0.91300 1.02642 0.91952 0.91821 0.91796 0.81832 0.91379 0.84431 0.90860 0.91240 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.70 9.31 36.01 0.34 -0.36 15 2 C -0.26 -4.80 6.39 -35.93 -0.23 -5.03 15 3 S 0.02 0.51 23.35 -107.50 -2.51 -2.00 15 4 C -0.06 -1.53 7.71 -16.26 -0.13 -1.66 15 5 C -0.14 -3.89 9.94 -36.95 -0.37 -4.26 15 6 C 0.08 2.30 6.07 -105.12 -0.64 1.66 15 7 C -0.44 -11.93 9.40 -37.89 -0.36 -12.29 15 8 H 0.08 1.95 7.84 -52.49 -0.41 1.54 15 9 C 0.07 1.83 5.49 -17.35 -0.10 1.73 15 10 N -0.82 -21.73 10.40 55.53 0.58 -21.15 15 11 Si 0.92 19.32 29.56 -169.99 -5.02 14.30 15 12 H -0.27 -5.65 7.11 56.52 0.40 -5.24 15 13 H -0.28 -5.75 7.11 56.52 0.40 -5.35 15 14 H -0.26 -5.49 7.11 56.52 0.40 -5.09 15 15 C -0.19 -4.98 11.83 -14.61 -0.17 -5.15 15 16 N -0.39 -9.48 3.10 -57.18 -0.18 -9.66 15 17 C 0.10 2.08 6.74 -81.37 -0.55 1.53 15 18 C -0.09 -1.36 9.81 36.01 0.35 -1.00 15 19 H 0.06 0.76 8.14 -51.93 -0.42 0.34 15 20 H 0.06 0.74 8.14 -51.93 -0.42 0.32 15 21 H 0.06 0.74 7.81 -51.93 -0.41 0.33 15 22 H 0.16 4.62 6.00 -52.49 -0.31 4.31 15 23 H 0.28 6.69 8.30 -40.82 -0.34 6.35 15 24 H 0.14 3.20 8.06 -52.49 -0.42 2.78 15 25 H 0.07 1.00 8.14 -51.93 -0.42 0.57 15 26 H 0.07 1.05 8.13 -51.93 -0.42 0.63 15 27 H 0.08 0.93 7.13 -51.93 -0.37 0.55 15 LS Contribution 248.11 15.07 3.74 3.74 Total: -1.00 -29.56 248.11 -7.99 -37.55 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -2.75 Total: 2.04 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: -1.84 Total: -24.82 kcal Atomic # 7 Polarization: -31.21 SS G_CDS: 0.40 Total: -30.81 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.02 Total: 14.30 kcal Atomic # 16 Polarization: 0.51 SS G_CDS: -2.51 Total: -2.00 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -29.56 -7.99 -37.55 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075396230.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.990 kcal (2) G-P(sol) polarization free energy of solvation -29.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds