Wall clock time and date at job start Mon Mar 30 2020 02:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30687 * 1 3 3 Si 1.86807 * 120.00241 * 2 1 4 4 H 1.48495 * 109.47039 * 269.99712 * 3 2 1 5 5 H 1.48499 * 109.46873 * 29.99370 * 3 2 1 6 6 H 1.48500 * 109.47250 * 149.99651 * 3 2 1 7 7 C 1.40120 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00373 * 180.02562 * 7 2 1 9 9 C 1.41178 * 119.99944 * 359.97438 * 7 2 1 10 10 N 1.31948 * 126.52632 * 359.97438 * 9 7 2 11 11 O 1.41315 * 109.37899 * 180.02562 * 10 9 7 12 12 C 1.35005 * 109.69634 * 0.02562 * 11 10 9 13 13 C 1.40215 * 107.53497 * 359.97438 * 12 11 10 14 14 C 1.39308 * 120.11148 * 179.97438 * 13 12 11 15 15 C 1.37833 * 119.88467 * 359.97438 * 14 13 12 16 16 C 1.39004 * 120.28833 * 359.97438 * 15 14 13 17 17 O 1.35957 * 119.80914 * 180.02562 * 16 15 14 18 18 C 1.38797 * 120.37673 * 0.02562 * 16 15 14 19 19 O 1.36041 * 120.09124 * 180.02562 * 18 16 15 20 20 H 0.96993 * 119.99847 * 0.02562 * 1 2 3 21 21 H 1.08003 * 120.06108 * 180.02562 * 14 13 12 22 22 H 1.08001 * 119.85448 * 179.97438 * 15 14 13 23 23 H 0.96695 * 114.00002 * 270.01717 * 17 16 15 24 24 H 0.96705 * 114.00218 * 269.97587 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6178 0.0000 4 1 2.4885 2.0464 -1.4000 5 1 1.4384 2.6527 0.6999 6 1 3.5385 1.4402 0.7001 7 6 2.0075 -1.2135 0.0005 8 1 3.0875 -1.2135 0.0010 9 6 1.3016 -2.4361 0.0016 10 7 -0.0093 -2.5861 0.0027 11 8 -0.3237 -3.9638 0.0042 12 6 0.8143 -4.6902 0.0046 13 6 1.8897 -3.7905 0.0028 14 6 3.1990 -4.2663 0.0033 15 6 3.4363 -5.6241 0.0061 16 6 2.3746 -6.5213 0.0089 17 8 2.6198 -7.8585 0.0122 18 6 1.0656 -6.0597 0.0085 19 8 0.0309 -6.9430 0.0118 20 1 -0.4849 0.8400 -0.0004 21 1 4.0268 -3.5726 0.0023 22 1 4.4515 -5.9924 0.0060 23 1 2.6905 -8.2476 -0.8702 24 1 -0.2691 -7.2007 -0.8706 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075579483.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:37 Heat of formation + Delta-G solvation = -65.806825 kcal Electronic energy + Delta-G solvation = -14339.482805 eV Core-core repulsion = 11605.328246 eV Total energy + Delta-G solvation = -2734.154558 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.052 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.03347 -39.97498 -37.89237 -36.62519 -36.04072 -33.15785 -30.39378 -29.57844 -28.36712 -23.86872 -23.54480 -22.31244 -19.94558 -19.21810 -18.62153 -17.76200 -17.17111 -16.74335 -16.56706 -15.97223 -15.29309 -15.07176 -14.59960 -14.10065 -13.37215 -13.18450 -13.10589 -12.79939 -12.53440 -12.17637 -11.93137 -11.84367 -11.48294 -11.14405 -10.76801 -9.45098 -9.29257 -8.72118 -6.97237 -0.12713 0.33228 1.31744 1.41287 1.59732 1.87061 2.17498 2.33919 2.53129 3.11031 3.23628 3.31892 3.90846 4.05142 4.14201 4.37720 4.85257 4.86159 5.09570 5.15157 5.22081 5.40569 5.70438 6.03562 6.41121 6.56809 6.60952 6.90893 7.44975 8.26861 Molecular weight = 221.05amu Principal moments of inertia in cm(-1) A = 0.051993 B = 0.008186 C = 0.007099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.407588 B = 3419.788738 C = 3943.317144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.014 3.986 3 Si 1.012 2.988 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.241 1.241 7 C -0.439 4.439 8 H 0.120 0.880 9 C 0.185 3.815 10 N -0.411 5.411 11 O -0.186 6.186 12 C 0.041 3.959 13 C -0.199 4.199 14 C -0.035 4.035 15 C -0.165 4.165 16 C 0.136 3.864 17 O -0.485 6.485 18 C 0.030 3.970 19 O -0.492 6.492 20 H 0.291 0.709 21 H 0.159 0.841 22 H 0.179 0.821 23 H 0.413 0.587 24 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.750 -6.517 -3.460 12.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.206 4.206 3 Si 0.830 3.170 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.164 1.164 7 C -0.478 4.478 8 H 0.138 0.862 9 C 0.030 3.970 10 N -0.189 5.189 11 O -0.180 6.180 12 C -0.014 4.014 13 C -0.203 4.203 14 C -0.054 4.054 15 C -0.184 4.184 16 C 0.089 3.911 17 O -0.298 6.298 18 C -0.017 4.017 19 O -0.303 6.303 20 H 0.102 0.898 21 H 0.176 0.824 22 H 0.196 0.804 23 H 0.273 0.727 24 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 8.331 -6.023 -2.253 10.525 hybrid contribution 0.034 0.226 -0.974 1.001 sum 8.366 -5.797 -3.228 10.677 Atomic orbital electron populations 1.69957 1.09859 1.31182 1.30997 1.27344 0.95766 1.05922 0.91544 0.84755 0.78872 0.73517 0.79873 1.18126 1.19685 1.16373 1.19509 0.95752 0.87537 1.44968 0.86243 1.21690 0.90615 0.92897 0.91777 1.81289 1.14074 0.80506 1.43045 1.89001 1.27816 1.18571 1.82624 1.21192 0.88951 0.93819 0.97483 1.21409 0.95800 0.91785 1.11272 1.20863 0.94052 0.96124 0.94355 1.21363 1.00141 0.91038 1.05823 1.18255 0.88968 0.84753 0.99126 1.84811 1.93141 1.16528 1.35355 1.17782 0.88506 0.83149 1.12298 1.84892 1.49579 1.61214 1.34582 0.89790 0.82383 0.80411 0.72725 0.74597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -44.25 11.97 21.85 0.26 -43.99 14 2 C 0.01 0.71 5.50 85.32 0.47 1.18 14 3 Si 1.01 36.08 29.56 68.60 2.03 38.11 14 4 H -0.26 -8.70 7.11 99.48 0.71 -8.00 14 5 H -0.27 -9.50 7.11 99.48 0.71 -8.80 14 6 H -0.24 -7.83 7.11 99.48 0.71 -7.12 14 7 C -0.44 -22.89 9.44 23.45 0.22 -22.67 14 8 H 0.12 5.35 7.85 -2.91 -0.02 5.32 14 9 C 0.18 10.55 6.95 42.34 0.29 10.84 14 10 N -0.41 -26.01 11.13 -48.36 -0.54 -26.55 14 11 O -0.19 -11.08 12.05 28.07 0.34 -10.75 14 12 C 0.04 2.05 7.39 22.99 0.17 2.22 14 13 C -0.20 -9.67 6.30 -20.05 -0.13 -9.80 14 14 C -0.03 -1.24 10.08 22.43 0.23 -1.02 14 15 C -0.17 -4.82 9.96 22.36 0.22 -4.60 14 16 C 0.14 4.34 6.71 22.59 0.15 4.49 14 17 O -0.49 -11.99 13.26 -78.76 -1.04 -13.03 14 18 C 0.03 1.20 6.73 22.65 0.15 1.35 14 19 O -0.49 -18.03 13.28 -79.62 -1.06 -19.08 14 20 H 0.29 14.55 8.29 -92.71 -0.77 13.78 14 21 H 0.16 4.71 8.06 -2.91 -0.02 4.68 14 22 H 0.18 3.56 8.06 -2.91 -0.02 3.53 14 23 H 0.41 5.24 9.06 -74.06 -0.67 4.56 14 24 H 0.40 10.08 9.07 -74.05 -0.67 9.41 14 Total: -1.00 -77.62 232.01 1.71 -75.91 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -0.06 Total: 17.38 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: 1.78 Total: -17.99 kcal Atomic # 7 Polarization: -70.26 SS G_CDS: -0.28 Total: -70.54 kcal Atomic # 8 Polarization: -41.10 SS G_CDS: -1.76 Total: -42.86 kcal Atomic # 14 Polarization: 36.08 SS G_CDS: 2.03 Total: 38.11 kcal Total: -77.62 1.71 -75.91 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075579483.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.102 kcal (2) G-P(sol) polarization free energy of solvation -77.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds