Wall clock time and date at job start Mon Mar 30 2020 02:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99607 * 2 1 4 4 H 1.48497 * 109.47408 * 269.99890 * 3 2 1 5 5 H 1.48497 * 109.47141 * 30.00048 * 3 2 1 6 6 H 1.48508 * 109.47055 * 149.99690 * 3 2 1 7 7 C 1.37871 * 120.00395 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00024 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00284 * 180.02562 * 7 2 1 10 10 C 1.50698 * 109.47293 * 180.02562 * 9 7 2 11 11 N 1.29738 * 126.28997 * 269.95672 * 10 9 7 12 12 O 1.41353 * 109.74033 * 180.02562 * 11 10 9 13 13 C 1.34898 * 109.32273 * 359.97438 * 12 11 10 14 14 C 1.38965 * 133.32641 * 179.97438 * 13 12 11 15 15 C 1.37758 * 119.96602 * 180.02562 * 14 13 12 16 16 C 1.38998 * 120.58412 * 359.97438 * 15 14 13 17 17 F 1.35099 * 119.84111 * 180.02562 * 16 15 14 18 18 C 1.37799 * 120.31738 * 0.02562 * 16 15 14 19 19 C 1.39724 * 119.65576 * 359.97438 * 18 16 15 20 20 H 0.96996 * 120.00356 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.47244 * 59.99800 * 9 7 2 22 22 H 1.09007 * 109.46998 * 300.00005 * 9 7 2 23 23 H 1.07996 * 120.01341 * 359.74254 * 14 13 12 24 24 H 1.07999 * 119.70557 * 179.97438 * 15 14 13 25 25 H 1.07995 * 120.17371 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0139 -2.6147 0.0010 11 7 4.2703 -3.3386 1.0467 12 8 4.7224 -4.6159 0.6439 13 6 4.7436 -4.6775 -0.7035 14 6 5.0961 -5.6727 -1.6071 15 6 5.0113 -5.4341 -2.9612 16 6 4.5744 -4.2031 -3.4364 17 9 4.4966 -3.9855 -4.7675 18 6 4.2204 -3.2036 -2.5563 19 6 4.3019 -3.4330 -1.1805 20 1 -0.4850 0.8400 -0.0004 21 1 3.8745 -0.6799 0.8911 22 1 3.8752 -0.6802 -0.8889 23 1 5.4406 -6.6311 -1.2478 24 1 5.2867 -6.2104 -3.6597 25 1 3.8809 -2.2482 -2.9281 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075579494.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:29 Heat of formation + Delta-G solvation = 10.525234 kcal Electronic energy + Delta-G solvation = -14051.829338 eV Core-core repulsion = 11333.357576 eV Total energy + Delta-G solvation = -2718.471762 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.78224 -41.37322 -37.23742 -34.63752 -32.60655 -30.54083 -29.52361 -29.02689 -23.70259 -23.14686 -22.46150 -19.72334 -17.94868 -17.07923 -16.97308 -16.34302 -15.74905 -15.18315 -14.79251 -14.44282 -14.08997 -13.47546 -13.16160 -12.74144 -12.36134 -12.12678 -11.70223 -11.37981 -11.19603 -10.99988 -10.70339 -10.37077 -9.92440 -9.54392 -8.83921 -8.76538 -8.25938 -6.25039 -4.28901 0.74029 1.19806 2.50147 2.92551 3.17728 3.26916 3.27131 3.55930 4.18528 4.25067 4.50503 4.61908 4.73702 4.93455 5.09141 5.35478 5.56855 5.82279 5.95423 6.03243 6.06338 6.37549 6.61831 6.70747 6.80198 7.36284 7.73031 8.24060 8.75567 9.30467 10.87161 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.030819 B = 0.008723 C = 0.007440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.316400 B = 3209.250122 C = 3762.434269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.078 3.922 3 Si 0.876 3.124 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.526 4.526 8 H 0.077 0.923 9 C 0.046 3.954 10 C 0.182 3.818 11 N -0.295 5.295 12 O -0.109 6.109 13 C 0.072 3.928 14 C -0.105 4.105 15 C -0.101 4.101 16 C 0.057 3.943 17 F -0.138 7.138 18 C -0.060 4.060 19 C -0.158 4.158 20 H 0.269 0.731 21 H 0.050 0.950 22 H 0.047 0.953 23 H 0.144 0.856 24 H 0.147 0.853 25 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.393 -7.173 -6.359 14.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.125 4.125 3 Si 0.702 3.298 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.564 4.564 8 H 0.095 0.905 9 C 0.007 3.993 10 C 0.002 3.998 11 N -0.042 5.042 12 O -0.115 6.115 13 C 0.017 3.983 14 C -0.125 4.125 15 C -0.121 4.121 16 C 0.037 3.963 17 F -0.117 7.117 18 C -0.081 4.081 19 C -0.161 4.161 20 H 0.079 0.921 21 H 0.068 0.932 22 H 0.065 0.935 23 H 0.162 0.838 24 H 0.165 0.835 25 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 10.295 -7.244 -5.039 13.559 hybrid contribution 0.157 0.933 -1.012 1.386 sum 10.452 -6.311 -6.051 13.627 Atomic orbital electron populations 1.69865 1.06263 1.27468 1.48954 1.24892 0.94794 0.98966 0.93876 0.86828 0.80522 0.83470 0.78957 1.19710 1.20746 1.18697 1.20649 0.86929 0.95328 1.53533 0.90519 1.18573 0.98255 0.83054 0.99372 1.25150 0.88453 0.98479 0.87727 1.79981 1.18304 0.88066 1.17835 1.89150 1.75025 1.30969 1.16323 1.20356 0.96814 0.95179 0.85937 1.19715 1.04467 0.98282 0.89993 1.20957 0.99695 0.96090 0.95310 1.17265 1.06291 0.95107 0.77594 1.91497 1.94569 1.95289 1.30363 1.20722 0.96754 0.99905 0.90692 1.20666 1.07243 0.93601 0.94635 0.92119 0.93189 0.93550 0.83806 0.83542 0.83127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.17 13.96 55.43 0.77 -25.40 15 2 C 0.08 2.16 5.47 -17.82 -0.10 2.06 15 3 Si 0.88 20.03 27.47 -169.99 -4.67 15.36 15 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 15 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 6 H -0.26 -5.71 6.54 56.52 0.37 -5.34 15 7 C -0.53 -14.35 9.65 -34.44 -0.33 -14.68 15 8 H 0.08 2.33 7.98 -52.49 -0.42 1.91 15 9 C 0.05 1.05 4.64 -29.04 -0.13 0.91 15 10 C 0.18 3.94 6.65 -80.12 -0.53 3.41 15 11 N -0.29 -6.51 12.81 34.91 0.45 -6.06 15 12 O -0.11 -2.15 12.07 7.46 0.09 -2.06 15 13 C 0.07 1.25 7.48 -38.50 -0.29 0.96 15 14 C -0.10 -1.36 10.06 -39.49 -0.40 -1.76 15 15 C -0.10 -1.20 9.99 -39.48 -0.39 -1.59 15 16 C 0.06 0.81 7.29 -39.46 -0.29 0.52 15 17 F -0.14 -1.95 17.26 2.25 0.04 -1.91 15 18 C -0.06 -0.98 10.08 -39.19 -0.39 -1.38 15 19 C -0.16 -2.97 6.32 -105.16 -0.66 -3.63 15 20 H 0.27 7.35 8.31 -40.82 -0.34 7.01 15 21 H 0.05 1.14 7.20 -51.93 -0.37 0.76 15 22 H 0.05 0.97 7.57 -51.92 -0.39 0.58 15 23 H 0.14 1.40 8.06 -52.49 -0.42 0.98 15 24 H 0.15 1.23 8.06 -52.49 -0.42 0.81 15 25 H 0.15 2.37 8.06 -52.49 -0.42 1.94 15 LS Contribution 237.18 15.07 3.57 3.57 Total: -1.00 -29.79 237.18 -4.89 -34.68 By element: Atomic # 1 Polarization: -1.39 SS G_CDS: -1.62 Total: -3.01 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -3.52 Total: -15.18 kcal Atomic # 7 Polarization: -32.67 SS G_CDS: 1.22 Total: -31.45 kcal Atomic # 8 Polarization: -2.15 SS G_CDS: 0.09 Total: -2.06 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.04 Total: -1.91 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.67 Total: 15.36 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -29.79 -4.89 -34.68 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075579494.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.207 kcal (2) G-P(sol) polarization free energy of solvation -29.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds