Wall clock time and date at job start Mon Mar 30 2020 02:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99607 * 2 1 4 4 H 1.48497 * 109.47408 * 269.99890 * 3 2 1 5 5 H 1.48497 * 109.47141 * 30.00048 * 3 2 1 6 6 H 1.48508 * 109.47055 * 149.99690 * 3 2 1 7 7 C 1.37871 * 120.00395 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00024 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00284 * 180.02562 * 7 2 1 10 10 C 1.50698 * 109.47293 * 180.02562 * 9 7 2 11 11 N 1.29738 * 126.28997 * 269.95672 * 10 9 7 12 12 O 1.41353 * 109.74033 * 180.02562 * 11 10 9 13 13 C 1.34898 * 109.32273 * 359.97438 * 12 11 10 14 14 C 1.38965 * 133.32641 * 179.97438 * 13 12 11 15 15 C 1.37758 * 119.96602 * 180.02562 * 14 13 12 16 16 C 1.38998 * 120.58412 * 359.97438 * 15 14 13 17 17 F 1.35099 * 119.84111 * 180.02562 * 16 15 14 18 18 C 1.37799 * 120.31738 * 0.02562 * 16 15 14 19 19 C 1.39724 * 119.65576 * 359.97438 * 18 16 15 20 20 H 0.96996 * 120.00356 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.47244 * 59.99800 * 9 7 2 22 22 H 1.09007 * 109.46998 * 300.00005 * 9 7 2 23 23 H 1.07996 * 120.01341 * 359.74254 * 14 13 12 24 24 H 1.07999 * 119.70557 * 179.97438 * 15 14 13 25 25 H 1.07995 * 120.17371 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0139 -2.6147 0.0010 11 7 4.2703 -3.3386 1.0467 12 8 4.7224 -4.6159 0.6439 13 6 4.7436 -4.6775 -0.7035 14 6 5.0961 -5.6727 -1.6071 15 6 5.0113 -5.4341 -2.9612 16 6 4.5744 -4.2031 -3.4364 17 9 4.4966 -3.9855 -4.7675 18 6 4.2204 -3.2036 -2.5563 19 6 4.3019 -3.4330 -1.1805 20 1 -0.4850 0.8400 -0.0004 21 1 3.8745 -0.6799 0.8911 22 1 3.8752 -0.6802 -0.8889 23 1 5.4406 -6.6311 -1.2478 24 1 5.2867 -6.2104 -3.6597 25 1 3.8809 -2.2482 -2.9281 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075579494.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:29 Heat of formation + Delta-G solvation = -8.304943 kcal Electronic energy + Delta-G solvation = -14052.645876 eV Core-core repulsion = 11333.357576 eV Total energy + Delta-G solvation = -2719.288300 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.92315 -42.78778 -38.47656 -36.33932 -34.55047 -31.82120 -31.09377 -30.57945 -25.51462 -24.53444 -23.72838 -21.28927 -19.22687 -19.14310 -18.33970 -17.54602 -17.13086 -16.47278 -16.32841 -16.10432 -15.34808 -14.95853 -14.57620 -14.18782 -14.11929 -13.68782 -13.15959 -12.91878 -12.72736 -12.46364 -12.37140 -11.97246 -11.80319 -11.46571 -10.86009 -10.11757 -9.51207 -8.37707 -6.48435 -0.51274 -0.01680 1.01327 1.37850 1.40283 1.50813 1.55726 2.30986 2.33844 2.91309 2.97658 3.15801 3.35829 3.49721 3.93215 4.10064 4.31188 4.52222 4.70691 4.78094 4.89595 4.91636 5.02195 5.05722 5.35077 5.58736 6.07999 6.23412 6.54854 7.15308 8.78588 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.030819 B = 0.008723 C = 0.007440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.316400 B = 3209.250122 C = 3762.434269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.020 3.980 3 Si 0.951 3.049 4 H -0.254 1.254 5 H -0.281 1.281 6 H -0.242 1.242 7 C -0.534 4.534 8 H 0.025 0.975 9 C 0.051 3.949 10 C 0.164 3.836 11 N -0.328 5.328 12 O -0.111 6.111 13 C 0.052 3.948 14 C -0.088 4.088 15 C -0.075 4.075 16 C 0.064 3.936 17 F -0.135 7.135 18 C -0.080 4.080 19 C -0.185 4.185 20 H 0.273 0.727 21 H 0.052 0.948 22 H 0.070 0.930 23 H 0.186 0.814 24 H 0.197 0.803 25 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.581 -7.920 -8.000 16.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.179 4.179 3 Si 0.772 3.228 4 H -0.178 1.178 5 H -0.207 1.207 6 H -0.166 1.166 7 C -0.573 4.573 8 H 0.044 0.956 9 C 0.013 3.987 10 C -0.016 4.016 11 N -0.074 5.074 12 O -0.120 6.120 13 C -0.002 4.002 14 C -0.107 4.107 15 C -0.095 4.095 16 C 0.045 3.955 17 F -0.113 7.113 18 C -0.101 4.101 19 C -0.188 4.188 20 H 0.082 0.918 21 H 0.070 0.930 22 H 0.088 0.912 23 H 0.204 0.796 24 H 0.214 0.786 25 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 12.493 -7.992 -6.689 16.269 hybrid contribution -0.545 0.970 -0.609 1.268 sum 11.948 -7.022 -7.298 15.663 Atomic orbital electron populations 1.70022 1.08451 1.28875 1.50530 1.25905 0.95635 1.03368 0.93010 0.85654 0.79561 0.77491 0.80077 1.17788 1.20659 1.16572 1.20767 0.89400 0.93574 1.53554 0.95640 1.18409 0.95203 0.84762 1.00356 1.25052 0.88967 0.98215 0.89353 1.79854 1.19203 0.89408 1.18956 1.89067 1.75282 1.29550 1.18087 1.20933 0.98024 0.96044 0.85156 1.20288 1.02361 0.98579 0.89487 1.21493 0.96641 0.95788 0.95544 1.17418 1.05290 0.95428 0.77361 1.91515 1.94436 1.95353 1.30036 1.20771 0.98130 1.00949 0.90220 1.20648 1.09280 0.94039 0.94855 0.91799 0.92979 0.91183 0.79650 0.78600 0.83465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.32 13.96 21.44 0.30 -57.02 15 2 C 0.02 1.12 5.47 84.65 0.46 1.58 15 3 Si 0.95 41.18 27.47 68.60 1.88 43.07 15 4 H -0.25 -10.22 7.11 99.48 0.71 -9.51 15 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 15 6 H -0.24 -9.65 6.54 99.48 0.65 -9.00 15 7 C -0.53 -30.40 9.65 25.60 0.25 -30.15 15 8 H 0.03 1.65 7.98 -2.91 -0.02 1.63 15 9 C 0.05 2.37 4.64 29.10 0.14 2.50 15 10 C 0.16 7.28 6.65 45.04 0.30 7.58 15 11 N -0.33 -14.94 12.81 -43.47 -0.56 -15.50 15 12 O -0.11 -4.41 12.07 29.09 0.35 -4.06 15 13 C 0.05 1.75 7.48 22.97 0.17 1.92 15 14 C -0.09 -1.92 10.06 22.33 0.22 -1.70 15 15 C -0.08 -1.42 9.99 22.34 0.22 -1.20 15 16 C 0.06 1.65 7.29 22.35 0.16 1.81 15 17 F -0.13 -3.38 17.26 44.97 0.78 -2.60 15 18 C -0.08 -2.57 10.08 22.53 0.23 -2.34 15 19 C -0.18 -6.95 6.32 -20.22 -0.13 -7.08 15 20 H 0.27 15.35 8.31 -92.71 -0.77 14.58 15 21 H 0.05 2.37 7.20 -2.39 -0.02 2.35 15 22 H 0.07 2.89 7.57 -2.38 -0.02 2.87 15 23 H 0.19 2.54 8.06 -2.91 -0.02 2.52 15 24 H 0.20 1.88 8.06 -2.91 -0.02 1.86 15 25 H 0.15 4.66 8.06 -2.91 -0.02 4.63 15 Total: -1.00 -68.57 237.18 5.95 -62.63 By element: Atomic # 1 Polarization: -0.61 SS G_CDS: 1.17 Total: 0.55 kcal Atomic # 6 Polarization: -29.10 SS G_CDS: 2.03 Total: -27.07 kcal Atomic # 7 Polarization: -72.26 SS G_CDS: -0.26 Total: -72.52 kcal Atomic # 8 Polarization: -4.41 SS G_CDS: 0.35 Total: -4.06 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.78 Total: -2.60 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 1.88 Total: 43.07 kcal Total: -68.57 5.95 -62.63 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075579494.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.323 kcal (2) G-P(sol) polarization free energy of solvation -68.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds