Wall clock time and date at job start Mon Mar 30 2020 02:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30595 * 1 3 3 Si 1.86791 * 120.00310 * 2 1 4 4 H 1.48497 * 109.47343 * 240.00306 * 3 2 1 5 5 H 1.48504 * 109.46943 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47133 * 119.99903 * 3 2 1 7 7 C 1.40343 * 119.99548 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99823 * 179.97438 * 7 2 1 9 9 C 1.40202 * 120.00180 * 0.02562 * 7 2 1 10 10 N 1.32460 * 125.30771 * 0.02562 * 9 7 2 11 11 C 1.33978 * 109.79931 * 179.97438 * 10 9 7 12 12 C 1.40595 * 133.18202 * 180.02562 * 11 10 9 13 13 C 1.36332 * 119.89315 * 180.02562 * 12 11 10 14 14 C 1.39043 * 120.78130 * 359.90945 * 13 12 11 15 15 C 1.38132 * 120.54603 * 0.06939 * 14 13 12 16 16 F 1.35104 * 120.14182 * 179.97438 * 15 14 13 17 17 C 1.38930 * 119.72396 * 359.97438 * 15 14 13 18 18 N 1.37825 * 125.30680 * 179.97438 * 9 7 2 19 19 N 1.36597 * 126.54682 * 359.75326 * 18 9 7 20 20 H 0.96998 * 119.99698 * 359.97438 * 1 2 3 21 21 H 1.07996 * 120.04978 * 359.95016 * 12 11 10 22 22 H 1.07996 * 119.60865 * 179.97438 * 13 12 11 23 23 H 1.08000 * 119.72972 * 180.02562 * 14 13 12 24 24 H 1.00903 * 110.99694 * 90.02293 * 19 18 9 25 25 H 1.00895 * 111.00626 * 213.97917 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2400 1.6176 0.0000 4 1 3.0937 1.6963 -1.2125 5 1 1.2750 2.7464 0.0006 6 1 3.0938 1.6962 1.2125 7 6 2.0076 -1.2155 0.0005 8 1 3.0876 -1.2155 0.0001 9 6 1.3065 -2.4296 0.0005 10 7 -0.0124 -2.5521 -0.0004 11 6 -0.3478 -3.8492 -0.0007 12 6 -1.5811 -4.5241 -0.0020 13 6 -1.6098 -5.8871 -0.0014 14 6 -0.4305 -6.6237 -0.0013 15 6 0.7951 -5.9866 -0.0004 16 9 1.9360 -6.7103 0.0003 17 6 0.8498 -4.5983 -0.0001 18 7 1.8822 -3.6819 0.0005 19 7 3.2190 -3.9625 -0.0042 20 1 -0.4849 0.8401 0.0004 21 1 -2.5043 -3.9637 -0.0024 22 1 -2.5598 -6.4009 -0.0020 23 1 -0.4730 -7.7029 -0.0012 24 1 3.5765 -4.0355 0.9366 25 1 3.4105 -4.8022 -0.5298 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075973534.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:39 Heat of formation + Delta-G solvation = 38.568358 kcal Electronic energy + Delta-G solvation = -14496.344100 eV Core-core repulsion = 11811.381130 eV Total energy + Delta-G solvation = -2684.962970 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.066 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.24802 -40.49461 -36.33839 -34.37776 -33.30636 -29.65954 -28.98548 -27.12460 -26.02640 -21.68162 -21.29440 -19.98123 -17.55543 -16.87876 -16.77355 -15.94909 -15.35092 -15.01646 -14.86789 -14.23551 -13.88740 -13.14530 -12.97214 -12.33738 -11.66262 -11.39305 -11.27272 -11.00228 -10.68472 -10.61730 -10.46089 -9.75302 -9.27403 -8.83062 -8.20093 -7.46650 -6.95347 -6.79436 -4.74696 1.92508 2.41492 2.97497 3.00078 3.02481 3.50145 3.84337 3.92950 4.73217 4.99258 5.13691 5.35660 5.62289 5.84676 6.06076 6.21854 6.47232 6.78096 6.87262 6.93849 7.13746 7.31392 7.42573 7.59300 7.75291 7.95839 8.19671 8.54512 9.18825 9.72602 10.09447 Molecular weight = 221.07amu Principal moments of inertia in cm(-1) A = 0.044036 B = 0.009393 C = 0.007771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.690559 B = 2980.092815 C = 3602.077941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.713 5.713 2 C 0.071 3.929 3 Si 0.926 3.074 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.413 4.413 8 H 0.098 0.902 9 C 0.439 3.561 10 N -0.527 5.527 11 C 0.145 3.855 12 C -0.137 4.137 13 C -0.094 4.094 14 C -0.218 4.218 15 C 0.104 3.896 16 F -0.164 7.164 17 C -0.074 4.074 18 N -0.385 5.385 19 N -0.579 5.579 20 H 0.283 0.717 21 H 0.118 0.882 22 H 0.116 0.884 23 H 0.117 0.883 24 H 0.335 0.665 25 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.601 -3.990 0.626 4.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.334 5.334 2 C -0.157 4.157 3 Si 0.749 3.251 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.450 4.450 8 H 0.116 0.884 9 C 0.207 3.793 10 N -0.252 5.252 11 C 0.013 3.987 12 C -0.159 4.159 13 C -0.115 4.115 14 C -0.240 4.240 15 C 0.081 3.919 16 F -0.143 7.143 17 C -0.183 4.183 18 N -0.172 5.172 19 N -0.202 5.202 20 H 0.094 0.906 21 H 0.136 0.864 22 H 0.134 0.866 23 H 0.135 0.865 24 H 0.150 0.850 25 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.143 -2.484 0.257 2.746 hybrid contribution 1.129 -1.229 0.485 1.738 sum 2.272 -3.713 0.742 4.416 Atomic orbital electron populations 1.69961 1.07351 1.29188 1.26918 1.26010 0.95031 1.01221 0.93432 0.86076 0.79768 0.79115 0.80105 1.18646 1.19963 1.18727 1.18696 0.94871 0.86875 1.44594 0.88407 1.20398 0.86162 0.82509 0.90243 1.71538 1.08316 1.11981 1.33330 1.19335 0.91060 0.91175 0.97090 1.19854 0.95226 0.93152 1.07649 1.20081 0.96512 0.93288 1.01635 1.20239 0.90368 0.98884 1.14496 1.16551 0.81865 0.85038 1.08457 1.91336 1.49858 1.78266 1.94842 1.19272 0.92704 0.90019 1.16321 1.44509 0.97822 1.05800 1.69104 1.59635 0.97294 1.44006 1.19281 0.90610 0.86420 0.86562 0.86490 0.85025 0.83441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.43 11.86 55.57 0.66 -17.77 15 2 C 0.07 1.73 5.50 -17.29 -0.10 1.64 15 3 Si 0.93 17.72 29.56 -169.99 -5.03 12.69 15 4 H -0.26 -4.95 7.11 56.52 0.40 -4.55 15 5 H -0.27 -5.11 7.11 56.52 0.40 -4.70 15 6 H -0.26 -4.93 7.11 56.52 0.40 -4.53 15 7 C -0.41 -10.67 9.24 -38.05 -0.35 -11.02 15 8 H 0.10 2.36 7.85 -52.48 -0.41 1.95 15 9 C 0.44 11.96 7.49 -155.70 -1.17 10.79 15 10 N -0.53 -14.87 9.33 -10.31 -0.10 -14.96 15 11 C 0.15 3.72 7.21 -84.89 -0.61 3.11 15 12 C -0.14 -2.98 10.07 -39.38 -0.40 -3.38 15 13 C -0.09 -1.76 9.96 -39.97 -0.40 -2.16 15 14 C -0.22 -4.19 10.02 -39.32 -0.39 -4.58 15 15 C 0.10 2.24 7.31 -39.36 -0.29 1.95 15 16 F -0.16 -3.27 16.45 2.25 0.04 -3.24 15 17 C -0.07 -1.80 6.99 -83.66 -0.58 -2.38 15 18 N -0.38 -9.41 3.85 -9.83 -0.04 -9.45 15 19 N -0.58 -11.56 10.29 60.35 0.62 -10.94 15 20 H 0.28 6.55 8.29 -40.82 -0.34 6.21 15 21 H 0.12 2.37 8.06 -52.49 -0.42 1.95 15 22 H 0.12 1.73 8.06 -52.49 -0.42 1.30 15 23 H 0.12 1.90 8.06 -52.49 -0.42 1.48 15 24 H 0.33 5.93 9.21 -181.36 -1.67 4.26 15 25 H 0.35 6.36 8.24 -181.37 -1.50 4.86 15 LS Contribution 234.20 15.07 3.53 3.53 Total: -1.00 -29.36 234.20 -8.58 -37.94 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -3.98 Total: 8.23 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -4.29 Total: -6.03 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 1.15 Total: -53.12 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.04 Total: -3.24 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.69 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -29.36 -8.58 -37.94 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075973534.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.504 kcal (2) G-P(sol) polarization free energy of solvation -29.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds