Wall clock time and date at job start Mon Mar 30 2020 02:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30604 * 1 3 3 Si 1.86794 * 120.00270 * 2 1 4 4 H 1.48500 * 109.46997 * 239.99861 * 3 2 1 5 5 H 1.48500 * 109.47280 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47149 * 119.99860 * 3 2 1 7 7 C 1.40335 * 119.99401 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99629 * 180.02562 * 7 2 1 9 9 C 1.40110 * 120.00312 * 359.97438 * 7 2 1 10 10 N 1.32496 * 125.30415 * 0.04629 * 9 7 2 11 11 C 1.33953 * 109.79818 * 179.97438 * 10 9 7 12 12 C 1.40588 * 133.14958 * 180.29409 * 11 10 9 13 13 C 1.36289 * 119.88030 * 180.17669 * 12 11 10 14 14 C 1.39329 * 120.72460 * 359.49150 * 13 12 11 15 15 F 1.35099 * 119.74373 * 180.28026 * 14 13 12 16 16 C 1.38242 * 120.50973 * 0.25681 * 14 13 12 17 17 C 1.38612 * 119.75232 * 0.02562 * 16 14 13 18 18 N 1.37898 * 125.31077 * 179.97438 * 9 7 2 19 19 N 1.36609 * 126.54352 * 0.02562 * 18 9 7 20 20 H 0.97007 * 119.99264 * 0.02562 * 1 2 3 21 21 H 1.07998 * 120.06368 * 359.94464 * 12 11 10 22 22 H 1.08002 * 119.64053 * 179.77613 * 13 12 11 23 23 H 1.08000 * 120.12350 * 180.02562 * 16 14 13 24 24 H 1.00899 * 110.99462 * 270.02456 * 19 18 9 25 25 H 1.00898 * 110.99746 * 33.97109 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2401 1.6176 0.0000 4 1 3.0939 1.6962 -1.2125 5 1 1.2752 2.7464 -0.0006 6 1 3.0938 1.6963 1.2125 7 6 2.0076 -1.2154 0.0005 8 1 3.0876 -1.2155 0.0010 9 6 1.3070 -2.4288 0.0016 10 7 -0.0123 -2.5512 0.0013 11 6 -0.3476 -3.8481 0.0021 12 6 -1.5813 -4.5222 -0.0031 13 6 -1.6106 -5.8847 0.0030 14 6 -0.4284 -6.6221 0.0037 15 9 -0.4805 -7.9721 0.0041 16 6 0.7974 -5.9830 0.0036 17 6 0.8510 -4.5979 0.0033 18 7 1.8829 -3.6817 0.0017 19 7 3.2199 -3.9624 0.0013 20 1 -0.4849 0.8402 -0.0004 21 1 -2.5043 -3.9614 -0.0081 22 1 -2.5605 -6.3986 0.0027 23 1 1.7099 -6.5607 0.0037 24 1 3.5734 -4.0365 -0.9408 25 1 3.7344 -3.2720 0.5273 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075973535.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:41 Heat of formation + Delta-G solvation = 20.274995 kcal Electronic energy + Delta-G solvation = -14300.913964 eV Core-core repulsion = 11615.157735 eV Total energy + Delta-G solvation = -2685.756230 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.066 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.57491 -42.33561 -37.94287 -36.02621 -35.08103 -31.95988 -30.47596 -28.87087 -27.61131 -23.53891 -22.65034 -22.01562 -19.38866 -18.71007 -18.34064 -17.61896 -16.92794 -16.53294 -16.30492 -15.96342 -15.06883 -14.79305 -14.68163 -13.89465 -13.83761 -13.35857 -13.00399 -12.68229 -12.21088 -12.12033 -12.04299 -11.59432 -10.99364 -10.73120 -9.83366 -9.18864 -8.74420 -8.58033 -6.67228 0.23020 0.72304 1.40789 1.43933 1.55575 1.79903 2.17152 2.19648 2.97087 3.42794 3.47089 3.75476 4.10853 4.12387 4.42932 4.61194 4.77725 5.01687 5.18632 5.25313 5.43030 5.46317 5.73290 5.92868 6.08908 6.13142 6.34371 6.64974 7.43759 7.85631 8.32938 Molecular weight = 221.07amu Principal moments of inertia in cm(-1) A = 0.054301 B = 0.008140 C = 0.007103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.521217 B = 3439.131539 C = 3940.927542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.759 5.759 2 C 0.032 3.968 3 Si 1.005 2.995 4 H -0.255 1.255 5 H -0.271 1.271 6 H -0.254 1.254 7 C -0.466 4.466 8 H 0.107 0.893 9 C 0.370 3.630 10 N -0.566 5.566 11 C 0.060 3.940 12 C -0.107 4.107 13 C -0.134 4.134 14 C 0.033 3.967 15 F -0.149 7.149 16 C -0.125 4.125 17 C 0.021 3.979 18 N -0.392 5.392 19 N -0.582 5.582 20 H 0.288 0.712 21 H 0.133 0.867 22 H 0.158 0.842 23 H 0.131 0.869 24 H 0.350 0.650 25 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.472 -2.331 -0.655 4.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C -0.192 4.192 3 Si 0.824 3.176 4 H -0.179 1.179 5 H -0.195 1.195 6 H -0.178 1.178 7 C -0.503 4.503 8 H 0.125 0.875 9 C 0.131 3.869 10 N -0.292 5.292 11 C -0.067 4.067 12 C -0.128 4.128 13 C -0.155 4.155 14 C 0.011 3.989 15 F -0.128 7.128 16 C -0.147 4.147 17 C -0.088 4.088 18 N -0.177 5.177 19 N -0.210 5.210 20 H 0.099 0.901 21 H 0.151 0.849 22 H 0.176 0.824 23 H 0.148 0.852 24 H 0.166 0.834 25 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 2.656 -2.306 -0.285 3.529 hybrid contribution 1.131 0.638 -0.473 1.382 sum 3.787 -1.668 -0.758 4.207 Atomic orbital electron populations 1.70075 1.09331 1.30456 1.28310 1.26962 0.95712 1.04500 0.92022 0.84910 0.78253 0.74101 0.80347 1.17864 1.19511 1.17776 1.18936 0.95107 0.87737 1.48564 0.87519 1.21338 0.88022 0.84898 0.92621 1.71286 1.09990 1.14126 1.33762 1.20041 0.93643 0.91501 1.01522 1.19860 0.94859 0.93191 1.04864 1.20547 0.97585 0.93011 1.04350 1.17055 0.93743 0.76330 1.11752 1.91388 1.97313 1.29065 1.95011 1.19609 0.97424 0.90652 1.07022 1.18361 0.88474 0.91274 1.10660 1.44238 1.00618 1.04719 1.68118 1.59464 0.88638 1.52280 1.20590 0.90119 0.84949 0.82412 0.85150 0.83362 0.81201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -39.57 11.85 21.89 0.26 -39.31 15 2 C 0.03 1.51 5.50 85.39 0.47 1.98 15 3 Si 1.01 34.38 29.56 68.60 2.03 36.40 15 4 H -0.25 -8.26 7.11 99.48 0.71 -7.55 15 5 H -0.27 -9.03 7.11 99.48 0.71 -8.32 15 6 H -0.25 -8.24 7.11 99.48 0.71 -7.54 15 7 C -0.47 -22.79 9.06 23.24 0.21 -22.58 15 8 H 0.11 4.49 7.32 -2.91 -0.02 4.47 15 9 C 0.37 19.67 7.46 133.65 1.00 20.67 15 10 N -0.57 -32.33 9.33 -186.46 -1.74 -34.07 15 11 C 0.06 3.10 7.21 40.17 0.29 3.39 15 12 C -0.11 -4.61 10.07 22.39 0.23 -4.38 15 13 C -0.13 -4.97 9.94 22.08 0.22 -4.75 15 14 C 0.03 1.27 7.31 22.53 0.16 1.44 15 15 F -0.15 -5.34 17.26 44.97 0.78 -4.56 15 16 C -0.12 -5.22 10.04 22.36 0.22 -4.99 15 17 C 0.02 1.00 7.09 39.04 0.28 1.28 15 18 N -0.39 -18.40 3.85 -185.20 -0.71 -19.11 15 19 N -0.58 -20.97 10.38 37.02 0.38 -20.59 15 20 H 0.29 13.51 8.29 -92.70 -0.77 12.74 15 21 H 0.13 5.29 8.06 -2.91 -0.02 5.27 15 22 H 0.16 4.59 8.06 -2.91 -0.02 4.57 15 23 H 0.13 4.96 8.06 -2.91 -0.02 4.94 15 24 H 0.35 10.90 9.21 -210.55 -1.94 8.97 15 25 H 0.37 11.98 8.31 -210.55 -1.75 10.22 15 Total: -1.00 -63.06 234.53 1.65 -61.41 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: -2.43 Total: 27.76 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: 3.08 Total: -7.94 kcal Atomic # 7 Polarization: -111.27 SS G_CDS: -1.81 Total: -113.08 kcal Atomic # 9 Polarization: -5.34 SS G_CDS: 0.78 Total: -4.56 kcal Atomic # 14 Polarization: 34.38 SS G_CDS: 2.03 Total: 36.40 kcal Total: -63.06 1.65 -61.41 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075973535.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.690 kcal (2) G-P(sol) polarization free energy of solvation -63.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds