Wall clock time and date at job start Mon Mar 30 2020 02:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30587 * 1 3 3 Si 1.86799 * 119.99818 * 2 1 4 4 H 1.48501 * 109.47320 * 274.98559 * 3 2 1 5 5 H 1.48507 * 109.47111 * 34.98656 * 3 2 1 6 6 H 1.48503 * 109.47106 * 154.98301 * 3 2 1 7 7 C 1.40347 * 120.00145 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99908 * 186.05207 * 7 2 1 9 9 C 1.40173 * 119.99891 * 6.04181 * 7 2 1 10 10 N 1.32477 * 125.30555 * 354.17043 * 9 7 2 11 11 C 1.33972 * 109.79622 * 180.02562 * 10 9 7 12 12 C 1.40520 * 133.17358 * 180.28921 * 11 10 9 13 13 C 1.36524 * 119.83056 * 180.17220 * 12 11 10 14 14 F 1.35105 * 119.63838 * 179.73517 * 13 12 11 15 15 C 1.39264 * 120.71359 * 359.50891 * 13 12 11 16 16 C 1.37943 * 120.54465 * 0.24675 * 15 13 12 17 17 C 1.38724 * 119.79218 * 0.02562 * 16 15 13 18 18 N 1.37840 * 125.30301 * 174.20962 * 9 7 2 19 19 N 1.36606 * 126.53682 * 359.96571 * 18 9 7 20 20 H 0.96999 * 119.99890 * 359.97438 * 1 2 3 21 21 H 1.07998 * 120.08232 * 359.97438 * 12 11 10 22 22 H 1.08004 * 119.72871 * 180.22514 * 15 13 12 23 23 H 1.08005 * 120.10249 * 179.97438 * 16 15 13 24 24 H 1.00900 * 110.99861 * 89.97868 * 19 18 9 25 25 H 1.00902 * 110.99735 * 213.92875 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2398 1.6178 0.0000 4 1 2.3819 2.1073 -1.3948 5 1 1.4939 2.6200 0.8028 6 1 3.5861 1.4121 0.5921 7 6 2.0076 -1.2154 -0.0005 8 1 3.0831 -1.2180 0.0981 9 6 1.3126 -2.4259 -0.1289 10 7 -0.0059 -2.5537 -0.1461 11 6 -0.3349 -3.8453 -0.2812 12 6 -1.5643 -4.5211 -0.3603 13 6 -1.5852 -5.8794 -0.4962 14 9 -2.7695 -6.5258 -0.5665 15 6 -0.3989 -6.6054 -0.5680 16 6 0.8206 -5.9644 -0.4977 17 6 0.8672 -4.5854 -0.3539 18 7 1.8945 -3.6690 -0.2560 19 7 3.2329 -3.9418 -0.2802 20 1 -0.4850 0.8400 0.0004 21 1 -2.4904 -3.9678 -0.3105 22 1 -0.4339 -7.6791 -0.6791 23 1 1.7362 -6.5345 -0.5537 24 1 3.5843 -4.1108 0.6504 25 1 3.4320 -4.7214 -0.8891 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075973536.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:51 Heat of formation + Delta-G solvation = 40.161038 kcal Electronic energy + Delta-G solvation = -14293.215927 eV Core-core repulsion = 11608.322021 eV Total energy + Delta-G solvation = -2684.893906 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.066 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.07616 -40.57584 -36.13167 -34.50639 -33.33408 -29.93671 -28.85059 -27.24692 -25.89713 -21.75635 -21.17252 -20.00398 -17.59090 -16.94160 -16.75831 -15.95584 -15.52157 -14.90850 -14.77445 -14.20454 -13.32357 -13.11104 -13.01711 -12.43341 -12.10970 -11.58579 -11.44444 -10.92665 -10.56196 -10.47968 -10.42739 -9.82508 -9.30397 -8.91957 -8.13128 -7.35105 -7.05835 -6.81341 -4.75428 1.94784 2.33189 2.94444 2.99397 3.03782 3.48196 3.82216 3.94577 4.70529 5.04446 5.14307 5.33270 5.49845 5.82349 6.12493 6.18158 6.54702 6.71533 6.85593 6.92189 7.05524 7.12179 7.36896 7.57413 7.75873 7.93899 8.18964 8.52860 9.17942 9.72310 10.07586 Molecular weight = 221.07amu Principal moments of inertia in cm(-1) A = 0.044766 B = 0.008513 C = 0.007183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.328523 B = 3288.183727 C = 3897.170732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.711 5.711 2 C 0.071 3.929 3 Si 0.925 3.075 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.412 4.412 8 H 0.098 0.902 9 C 0.439 3.561 10 N -0.530 5.530 11 C 0.147 3.853 12 C -0.170 4.170 13 C 0.096 3.904 14 F -0.157 7.157 15 C -0.216 4.216 16 C -0.078 4.078 17 C -0.046 4.046 18 N -0.390 5.390 19 N -0.578 5.578 20 H 0.282 0.718 21 H 0.123 0.877 22 H 0.118 0.882 23 H 0.104 0.896 24 H 0.334 0.666 25 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.718 -4.118 0.082 5.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.332 5.332 2 C -0.157 4.157 3 Si 0.748 3.252 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.449 4.449 8 H 0.116 0.884 9 C 0.207 3.793 10 N -0.255 5.255 11 C 0.016 3.984 12 C -0.192 4.192 13 C 0.075 3.925 14 F -0.136 7.136 15 C -0.238 4.238 16 C -0.100 4.100 17 C -0.154 4.154 18 N -0.178 5.178 19 N -0.202 5.202 20 H 0.094 0.906 21 H 0.141 0.859 22 H 0.136 0.864 23 H 0.122 0.878 24 H 0.149 0.851 25 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.170 -2.580 -0.132 4.089 hybrid contribution 0.689 -1.223 0.276 1.430 sum 3.859 -3.803 0.143 5.420 Atomic orbital electron populations 1.69973 1.07400 1.29134 1.26706 1.26019 0.95002 1.01273 0.93444 0.86020 0.80219 0.79599 0.79316 1.19179 1.19858 1.18273 1.18724 0.95231 0.87071 1.43882 0.88367 1.20425 0.85977 0.82755 0.90123 1.71524 1.08493 1.12191 1.33287 1.19002 0.90789 0.91801 0.96818 1.19559 0.96868 0.91608 1.11190 1.16825 0.80102 0.90035 1.05536 1.91385 1.45745 1.81994 1.94519 1.20166 0.90567 0.98781 1.14305 1.19296 0.96723 0.90085 1.03900 1.19308 0.91291 0.91886 1.12952 1.44547 0.97823 1.06577 1.68856 1.59600 0.97527 1.47940 1.15106 0.90632 0.85852 0.86435 0.87831 0.85052 0.83722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.35 11.88 55.57 0.66 -17.69 15 2 C 0.07 1.71 5.49 -17.29 -0.09 1.62 15 3 Si 0.93 17.54 29.57 -169.99 -5.03 12.51 15 4 H -0.27 -5.03 7.11 56.52 0.40 -4.62 15 5 H -0.27 -5.07 7.11 56.52 0.40 -4.67 15 6 H -0.26 -4.77 7.11 56.52 0.40 -4.37 15 7 C -0.41 -10.43 9.23 -38.06 -0.35 -10.78 15 8 H 0.10 2.31 7.86 -52.49 -0.41 1.90 15 9 C 0.44 11.69 7.48 -155.68 -1.17 10.53 15 10 N -0.53 -14.89 9.35 -10.31 -0.10 -14.99 15 11 C 0.15 3.78 7.20 -84.89 -0.61 3.17 15 12 C -0.17 -3.93 10.04 -39.34 -0.39 -4.32 15 13 C 0.10 2.02 7.24 -39.82 -0.29 1.73 15 14 F -0.16 -3.11 17.25 2.25 0.04 -3.07 15 15 C -0.22 -4.15 10.01 -39.31 -0.39 -4.54 15 16 C -0.08 -1.52 10.07 -39.51 -0.40 -1.92 15 17 C -0.05 -1.06 7.00 -83.72 -0.59 -1.65 15 18 N -0.39 -9.00 3.85 -9.87 -0.04 -9.04 15 19 N -0.58 -10.40 10.29 60.35 0.62 -9.78 15 20 H 0.28 6.52 8.29 -40.82 -0.34 6.19 15 21 H 0.12 2.75 8.06 -52.49 -0.42 2.33 15 22 H 0.12 1.90 8.06 -52.48 -0.42 1.48 15 23 H 0.10 1.67 8.06 -52.48 -0.42 1.24 15 24 H 0.33 5.23 9.21 -181.36 -1.67 3.56 15 25 H 0.35 5.25 9.09 -181.36 -1.65 3.60 15 LS Contribution 235.89 15.07 3.55 3.55 Total: -1.00 -29.33 235.89 -8.70 -38.03 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -4.13 Total: 6.64 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -4.28 Total: -6.17 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: 1.15 Total: -51.50 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.04 Total: -3.07 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.03 Total: 12.51 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -29.33 -8.70 -38.03 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075973536.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.189 kcal (2) G-P(sol) polarization free energy of solvation -29.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds