Wall clock time and date at job start Mon Mar 30 2020 03:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30638 * 1 3 3 Si 1.86800 * 120.00267 * 2 1 4 4 H 1.48491 * 109.47140 * 240.00388 * 3 2 1 5 5 H 1.48497 * 109.46977 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46674 * 120.00421 * 3 2 1 7 7 C 1.40122 * 119.99242 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99277 * 179.97438 * 7 2 1 9 9 C 1.46163 * 120.00444 * 359.97438 * 7 2 1 10 10 O 1.21742 * 120.00153 * 0.02562 * 9 7 2 11 11 N 1.34780 * 120.00253 * 179.97438 * 9 7 2 12 12 C 1.39529 * 120.00312 * 185.27632 * 11 9 7 13 13 C 1.39025 * 120.08159 * 33.38995 * 12 11 9 14 14 C 1.38065 * 119.91703 * 180.02562 * 13 12 11 15 15 C 1.38337 * 120.08110 * 0.02698 * 14 13 12 16 16 C 1.50695 * 119.91287 * 179.97438 * 15 14 13 17 17 O 1.42893 * 109.47532 * 89.99966 * 16 15 14 18 18 C 1.38332 * 120.16672 * 0.23251 * 15 14 13 19 19 C 1.38063 * 120.08123 * 359.48913 * 18 15 14 20 20 H 0.97007 * 119.99749 * 359.97438 * 1 2 3 21 21 H 0.97003 * 119.99739 * 5.28499 * 11 9 7 22 22 H 1.07994 * 120.04396 * 0.02562 * 13 12 11 23 23 H 1.07996 * 119.95892 * 180.02562 * 14 13 12 24 24 H 1.09000 * 109.47614 * 329.99451 * 16 15 14 25 25 H 1.09006 * 109.46651 * 209.99753 * 16 15 14 26 26 H 0.96697 * 114.00739 * 179.97438 * 17 16 15 27 27 H 1.07991 * 119.95585 * 179.72501 * 18 15 14 28 28 H 1.08001 * 120.04001 * 180.26056 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.0941 1.6964 -1.2125 5 1 1.2755 2.7464 0.0006 6 1 3.0943 1.6962 1.2125 7 6 2.0068 -1.2136 -0.0005 8 1 3.0869 -1.2136 -0.0010 9 6 1.2759 -2.4794 -0.0005 10 8 0.0585 -2.4793 -0.0005 11 7 1.9497 -3.6466 -0.0016 12 6 1.2564 -4.8524 -0.1127 13 6 0.0943 -4.9205 -0.8728 14 6 -0.5894 -6.1151 -0.9800 15 6 -0.1197 -7.2434 -0.3318 16 6 -0.8692 -8.5453 -0.4509 17 8 -0.3769 -9.2774 -1.5749 18 6 1.0333 -7.1782 0.4298 19 6 1.7255 -5.9885 0.5370 20 1 -0.4850 0.8401 0.0004 21 1 2.9167 -3.6485 0.0750 22 1 -0.2732 -4.0400 -1.3787 23 1 -1.4920 -6.1689 -1.5705 24 1 -1.9315 -8.3420 -0.5867 25 1 -0.7248 -9.1320 0.4564 26 1 -0.8147 -10.1285 -1.7125 27 1 1.3945 -8.0600 0.9379 28 1 2.6279 -5.9394 1.1283 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083341528.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:51 Heat of formation + Delta-G solvation = -93.967080 kcal Electronic energy + Delta-G solvation = -14167.030810 eV Core-core repulsion = 11567.488226 eV Total energy + Delta-G solvation = -2599.542584 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.88770 -39.08473 -37.37559 -35.29450 -34.54098 -31.79693 -31.40075 -28.61362 -26.15441 -23.83516 -22.81645 -21.39414 -19.49451 -18.27852 -18.04090 -17.59375 -16.57722 -16.40719 -15.83595 -15.13314 -14.93692 -14.55280 -14.49975 -14.03225 -13.80564 -13.36500 -13.18073 -12.77370 -12.75156 -12.10934 -12.05921 -12.04847 -11.06619 -10.89561 -10.81431 -10.02641 -9.73105 -8.76222 -8.38808 -6.97380 0.41396 0.55158 1.38712 1.42014 1.54368 2.19948 2.34104 2.82798 2.93625 3.54641 3.71463 3.96597 4.10103 4.27541 4.39587 4.55562 4.60635 4.82965 4.88854 5.13913 5.23135 5.42061 5.50510 5.71004 5.78455 5.93563 6.14536 6.39035 6.75280 7.01189 7.31471 8.32631 8.54671 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.077718 B = 0.005769 C = 0.005512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.191889 B = 4852.031682 C = 5078.235388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.028 3.972 3 Si 1.004 2.996 4 H -0.254 1.254 5 H -0.273 1.273 6 H -0.252 1.252 7 C -0.567 4.567 8 H 0.094 0.906 9 C 0.528 3.472 10 O -0.607 6.607 11 N -0.694 5.694 12 C 0.163 3.837 13 C -0.164 4.164 14 C -0.087 4.087 15 C -0.143 4.143 16 C 0.129 3.871 17 O -0.590 6.590 18 C -0.074 4.074 19 C -0.172 4.172 20 H 0.278 0.722 21 H 0.408 0.592 22 H 0.093 0.907 23 H 0.128 0.872 24 H 0.062 0.938 25 H 0.078 0.922 26 H 0.398 0.602 27 H 0.157 0.843 28 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.700 -12.984 0.546 13.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.188 4.188 3 Si 0.822 3.178 4 H -0.178 1.178 5 H -0.198 1.198 6 H -0.176 1.176 7 C -0.602 4.602 8 H 0.112 0.888 9 C 0.335 3.665 10 O -0.493 6.493 11 N -0.339 5.339 12 C 0.065 3.935 13 C -0.185 4.185 14 C -0.106 4.106 15 C -0.144 4.144 16 C 0.052 3.948 17 O -0.399 6.399 18 C -0.092 4.092 19 C -0.193 4.193 20 H 0.088 0.912 21 H 0.243 0.757 22 H 0.112 0.888 23 H 0.146 0.854 24 H 0.080 0.920 25 H 0.096 0.904 26 H 0.248 0.752 27 H 0.174 0.826 28 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.070 -12.284 0.487 12.467 hybrid contribution 0.090 0.616 -0.039 0.623 sum 2.160 -11.668 0.449 11.875 Atomic orbital electron populations 1.70150 1.09628 1.29483 1.34996 1.27051 0.95596 1.05111 0.91054 0.84981 0.78159 0.74225 0.80425 1.17765 1.19793 1.17593 1.21397 0.95064 0.89569 1.54201 0.88822 1.18767 0.87220 0.83839 0.76720 1.90594 1.15646 1.87223 1.55822 1.43738 1.10253 1.03994 1.75872 1.18315 0.93865 0.87071 0.94221 1.21138 0.97979 0.98114 1.01260 1.21028 0.99453 0.91671 0.98450 1.19874 0.98278 0.95060 1.01203 1.20896 0.95747 0.88707 0.89436 1.86537 1.66111 1.37274 1.49986 1.21117 0.93319 0.97392 0.97420 1.21157 1.03536 0.92360 1.02290 0.91185 0.75678 0.88841 0.85397 0.91999 0.90388 0.75203 0.82585 0.83711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -49.28 11.82 21.85 0.26 -49.02 15 2 C 0.03 1.55 5.50 85.33 0.47 2.02 15 3 Si 1.00 40.14 29.56 68.60 2.03 42.17 15 4 H -0.25 -9.56 7.11 99.48 0.71 -8.85 15 5 H -0.27 -10.55 7.11 99.48 0.71 -9.84 15 6 H -0.25 -9.43 7.11 99.48 0.71 -8.72 15 7 C -0.57 -31.83 9.54 24.79 0.24 -31.59 15 8 H 0.09 4.64 7.85 -2.91 -0.02 4.62 15 9 C 0.53 30.96 7.47 86.30 0.65 31.61 15 10 O -0.61 -40.64 12.70 -4.48 -0.06 -40.70 15 11 N -0.69 -32.94 5.32 -307.54 -1.64 -34.58 15 12 C 0.16 7.22 6.28 38.29 0.24 7.46 15 13 C -0.16 -7.67 8.65 22.42 0.19 -7.47 15 14 C -0.09 -3.31 9.69 22.25 0.22 -3.09 15 15 C -0.14 -4.48 5.51 -19.82 -0.11 -4.59 15 16 C 0.13 2.83 7.17 71.23 0.51 3.34 15 17 O -0.59 -13.05 13.64 -148.98 -2.03 -15.08 15 18 C -0.07 -2.20 9.69 22.25 0.22 -1.99 15 19 C -0.17 -5.96 9.97 22.42 0.22 -5.74 15 20 H 0.28 15.22 8.29 -92.70 -0.77 14.46 15 21 H 0.41 16.18 8.79 -92.71 -0.82 15.37 15 22 H 0.09 5.16 6.42 -2.91 -0.02 5.14 15 23 H 0.13 4.32 8.06 -2.91 -0.02 4.30 15 24 H 0.06 1.21 8.08 -2.39 -0.02 1.19 15 25 H 0.08 1.28 8.08 -2.38 -0.02 1.26 15 26 H 0.40 4.21 9.12 -74.06 -0.68 3.53 15 27 H 0.16 3.36 8.06 -2.92 -0.02 3.33 15 28 H 0.15 4.12 8.06 -2.91 -0.02 4.10 15 Total: -1.00 -78.49 254.64 1.11 -77.38 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: -0.29 Total: 29.88 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: 2.84 Total: -10.04 kcal Atomic # 7 Polarization: -82.22 SS G_CDS: -1.38 Total: -83.60 kcal Atomic # 8 Polarization: -53.69 SS G_CDS: -2.09 Total: -55.78 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Total: -78.49 1.11 -77.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083341528.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.591 kcal (2) G-P(sol) polarization free energy of solvation -78.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds