Wall clock time and date at job start Mon Mar 30 2020 03:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48503 * 109.47163 * 240.27725 * 3 2 1 5 5 H 1.48495 * 109.47159 * 0.27736 * 3 2 1 6 6 H 1.48505 * 109.47290 * 120.27720 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 11 11 N 1.46901 * 109.47265 * 59.99927 * 9 7 2 12 12 C 1.50697 * 109.47266 * 180.02562 * 9 7 2 13 13 C 1.38278 * 119.98193 * 264.72828 * 12 9 7 14 14 C 1.38215 * 120.14259 * 179.79570 * 13 12 9 15 15 C 1.38272 * 120.14051 * 0.43695 * 14 13 12 16 16 C 1.38506 * 120.03266 * 359.80119 * 15 14 13 17 17 C 1.38499 * 119.98467 * 84.99855 * 12 9 7 18 18 O 1.36495 * 131.54872 * 359.97438 * 17 12 9 19 19 C 1.43985 * 105.49071 * 162.72051 * 18 17 12 20 20 O 1.36495 * 131.53924 * 179.97438 * 16 15 14 21 21 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 22 22 H 1.00903 * 111.00044 * 296.04529 * 11 9 7 23 23 H 1.00893 * 110.99930 * 60.00134 * 11 9 7 24 24 H 1.08004 * 119.92930 * 359.97392 * 13 12 9 25 25 H 1.07999 * 119.92572 * 180.26113 * 14 13 12 26 26 H 1.08006 * 119.98430 * 179.77519 * 15 14 13 27 27 H 1.09006 * 110.57200 * 268.56477 * 19 18 17 28 28 H 1.08994 * 110.57120 * 145.69764 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.0979 1.6993 -1.2159 5 1 1.2843 2.7464 0.0068 6 1 3.1081 1.6934 1.2091 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 1 0.6280 -2.5591 0.8866 11 7 0.4014 -2.5741 -1.2019 12 6 2.2302 -3.6447 -0.0121 13 6 2.5911 -4.2388 -1.2075 14 6 3.4921 -5.2868 -1.2175 15 6 4.0297 -5.7516 -0.0313 16 6 3.6691 -5.1646 1.1702 17 6 2.7640 -4.1055 1.1799 18 8 2.5741 -3.7061 2.4712 19 6 3.0543 -4.7929 3.2845 20 8 4.0457 -5.4282 2.4554 21 1 -0.4849 0.8401 0.0041 22 1 -0.3059 -1.8546 -1.1886 23 1 0.9559 -2.5207 -2.0431 24 1 2.1701 -3.8812 -2.1356 25 1 3.7747 -5.7455 -2.1535 26 1 4.7308 -6.5731 -0.0418 27 1 2.2450 -5.4861 3.5141 28 1 3.5072 -4.4145 4.2009 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084349962.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:23 Heat of formation + Delta-G solvation = -36.543425 kcal Electronic energy + Delta-G solvation = -14923.933423 eV Core-core repulsion = 12326.880915 eV Total energy + Delta-G solvation = -2597.052507 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.57693 -37.59064 -35.78916 -34.44731 -31.55541 -29.48066 -28.96722 -25.99553 -25.33184 -23.15278 -22.21067 -20.19862 -17.43512 -17.13550 -16.67804 -16.42999 -15.77968 -14.75569 -14.12367 -14.03696 -13.69797 -13.08834 -12.89304 -12.41736 -12.29970 -12.12875 -11.94180 -11.16754 -11.07334 -10.75198 -10.61774 -10.42646 -10.01278 -9.60947 -8.67901 -7.96092 -7.52297 -7.22083 -6.09162 -4.24880 1.77147 1.91505 3.25157 3.29607 3.30455 3.33762 3.98918 4.22086 4.38919 5.03966 5.05072 5.16235 5.22695 5.52207 5.66982 5.80223 5.93450 6.12574 6.48086 6.67877 6.71896 6.87474 7.01364 7.16912 7.63313 7.74451 7.77453 8.06262 8.64919 8.89877 9.07888 9.45757 10.89174 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.031852 B = 0.009717 C = 0.008633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.846519 B = 2880.990087 C = 3242.608190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.067 3.933 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.540 4.540 8 H 0.055 0.945 9 C 0.243 3.757 10 H 0.052 0.948 11 N -0.850 5.850 12 C -0.010 4.010 13 C -0.102 4.102 14 C -0.119 4.119 15 C -0.127 4.127 16 C 0.018 3.982 17 C 0.031 3.969 18 O -0.295 6.295 19 C 0.210 3.790 20 O -0.319 6.319 21 H 0.266 0.734 22 H 0.358 0.642 23 H 0.312 0.688 24 H 0.136 0.864 25 H 0.128 0.872 26 H 0.123 0.877 27 H 0.075 0.925 28 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.826 -8.618 0.855 9.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.135 4.135 3 Si 0.726 3.274 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.579 4.579 8 H 0.073 0.927 9 C 0.133 3.867 10 H 0.070 0.930 11 N -0.380 5.380 12 C -0.011 4.011 13 C -0.120 4.120 14 C -0.137 4.137 15 C -0.146 4.146 16 C -0.026 4.026 17 C -0.013 4.013 18 O -0.211 6.211 19 C 0.098 3.902 20 O -0.236 6.236 21 H 0.076 0.924 22 H 0.174 0.826 23 H 0.121 0.879 24 H 0.154 0.846 25 H 0.146 0.854 26 H 0.140 0.860 27 H 0.092 0.908 28 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.522 -9.130 1.337 10.275 hybrid contribution 0.888 1.909 0.209 2.116 sum 5.410 -7.220 1.546 9.154 Atomic orbital electron populations 1.69728 1.05836 1.27340 1.50444 1.24998 0.94960 0.99291 0.94294 0.86543 0.79558 0.82474 0.78792 1.20158 1.21131 1.20150 1.21703 0.93547 0.90817 1.51870 0.92721 1.17898 0.88935 0.87855 0.92011 0.93032 1.59573 1.18389 1.56179 1.03881 1.19640 0.96445 0.96828 0.88219 1.20805 0.97511 0.96053 0.97663 1.20820 0.98323 0.97970 0.96583 1.19799 1.04216 1.01908 0.88655 1.19776 0.98699 0.98237 0.85845 1.19589 0.99912 0.95931 0.85904 1.87468 1.80916 1.38756 1.13968 1.25508 0.88133 0.84217 0.92386 1.87258 1.48372 1.73796 1.14168 0.92379 0.82592 0.87853 0.84643 0.85440 0.85950 0.90753 0.86003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.86 11.53 55.43 0.64 -24.22 15 2 C 0.07 1.83 5.38 -17.82 -0.10 1.73 15 3 Si 0.90 21.32 29.54 -169.99 -5.02 16.29 15 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 15 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 7 C -0.54 -14.89 8.71 -34.44 -0.30 -15.19 15 8 H 0.05 1.54 7.74 -52.49 -0.41 1.14 15 9 C 0.24 6.22 2.94 -70.02 -0.21 6.01 15 10 H 0.05 1.49 8.12 -51.93 -0.42 1.06 15 11 N -0.85 -20.07 8.78 -6.65 -0.06 -20.13 15 12 C -0.01 -0.23 5.00 -104.51 -0.52 -0.75 15 13 C -0.10 -1.94 9.26 -39.58 -0.37 -2.31 15 14 C -0.12 -1.91 10.04 -39.58 -0.40 -2.31 15 15 C -0.13 -2.11 10.06 -39.47 -0.40 -2.51 15 16 C 0.02 0.35 7.15 -39.08 -0.28 0.07 15 17 C 0.03 0.68 6.83 -39.09 -0.27 0.41 15 18 O -0.30 -6.29 11.39 -45.67 -0.52 -6.81 15 19 C 0.21 3.29 8.89 101.05 0.90 4.19 15 20 O -0.32 -5.66 11.40 -45.67 -0.52 -6.18 15 21 H 0.27 7.08 8.31 -40.82 -0.34 6.74 15 22 H 0.36 9.05 7.07 -39.29 -0.28 8.78 15 23 H 0.31 6.82 7.20 -39.30 -0.28 6.54 15 24 H 0.14 2.41 6.28 -52.48 -0.33 2.08 15 25 H 0.13 1.58 8.06 -52.49 -0.42 1.16 15 26 H 0.12 1.67 8.06 -52.48 -0.42 1.25 15 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 15 28 H 0.12 1.47 8.14 -51.93 -0.42 1.05 15 LS Contribution 245.36 15.07 3.70 3.70 Total: -1.00 -29.89 245.36 -6.26 -36.15 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -2.54 Total: 11.84 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -1.93 Total: -10.64 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: 0.58 Total: -44.35 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -1.04 Total: -12.99 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -29.89 -6.26 -36.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084349962.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.392 kcal (2) G-P(sol) polarization free energy of solvation -29.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds