Wall clock time and date at job start Mon Mar 30 2020 02:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99624 * 2 1 4 4 H 1.48507 * 109.46951 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47122 * 299.99585 * 3 2 1 6 6 H 1.48496 * 109.47369 * 59.99907 * 3 2 1 7 7 C 1.37870 * 119.99756 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99829 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00661 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.26525 * 58.06748 * 9 7 2 11 11 C 1.54145 * 109.27631 * 298.54721 * 9 7 2 12 12 S 1.83299 * 101.11378 * 268.09364 * 11 9 7 13 13 C 1.77524 * 96.58087 * 335.20451 * 12 11 9 14 14 C 1.38821 * 130.55389 * 195.47259 * 13 12 11 15 15 C 1.38024 * 120.16062 * 179.32577 * 14 13 12 16 16 C 1.38327 * 119.29139 * 359.97438 * 15 14 13 17 17 C 1.37702 * 120.54286 * 0.16204 * 16 15 14 18 18 C 1.38881 * 108.29359 * 15.13148 * 13 12 11 19 19 H 0.96997 * 120.00067 * 359.97438 * 1 2 3 20 20 H 1.00901 * 111.00051 * 301.92967 * 10 9 7 21 21 H 1.00900 * 110.99992 * 65.88383 * 10 9 7 22 22 H 1.09002 * 111.10168 * 26.06606 * 11 9 7 23 23 H 1.09002 * 111.09834 * 150.12404 * 11 9 7 24 24 H 1.08002 * 119.91966 * 359.31357 * 14 13 12 25 25 H 1.07998 * 120.35517 * 179.97438 * 15 14 13 26 26 H 1.07996 * 119.72846 * 180.15898 * 16 15 14 27 27 H 1.07996 * 119.47089 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 0.3740 -2.5525 -1.1767 11 6 0.3940 -2.5920 1.2784 12 16 1.5447 -3.4561 2.4137 13 6 2.5106 -4.2539 1.1559 14 6 3.4068 -5.3107 1.2405 15 6 4.0394 -5.7761 0.1055 16 6 3.7696 -5.1789 -1.1127 17 6 2.8827 -4.1289 -1.1961 18 6 2.2355 -3.6408 -0.0595 19 1 -0.4850 0.8400 0.0004 20 1 -0.2698 -1.7756 -1.1835 21 1 0.9137 -2.5823 -2.0287 22 1 0.1421 -1.6005 1.6548 23 1 -0.5050 -3.1837 1.1057 24 1 3.6098 -5.7696 2.1969 25 1 4.7375 -6.5978 0.1678 26 1 4.2586 -5.5392 -2.0057 27 1 2.6852 -3.6752 -2.1561 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084350330.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:21 Heat of formation + Delta-G solvation = 25.946466 kcal Electronic energy + Delta-G solvation = -12923.382683 eV Core-core repulsion = 10771.792812 eV Total energy + Delta-G solvation = -2151.589871 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 221.057 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.76971 -35.67007 -31.94295 -30.38332 -29.41641 -27.59282 -25.48207 -22.40843 -21.95934 -19.50861 -17.10781 -16.59375 -15.21026 -14.68315 -14.52151 -14.23533 -13.62494 -13.48022 -12.35802 -12.32523 -12.17939 -12.02189 -11.33345 -11.08352 -11.03273 -10.67018 -10.46360 -10.10361 -9.89724 -9.39052 -9.02247 -8.72101 -8.15487 -7.39896 -6.58709 -6.21231 -4.43575 1.88879 1.99638 2.58392 3.14135 3.23711 3.28010 3.29379 4.18820 4.37525 4.94809 5.41507 5.47128 5.53107 5.89753 6.02838 6.18917 6.35567 6.43163 6.59677 6.67965 6.87884 7.03664 7.11889 7.33020 7.51926 7.61893 7.87635 8.43282 8.73911 8.95763 9.29943 10.70337 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.032885 B = 0.011426 C = 0.010462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.243507 B = 2450.058273 C = 2675.613030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.068 3.932 3 Si 0.902 3.098 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.529 4.529 8 H 0.061 0.939 9 C 0.263 3.737 10 N -0.843 5.843 11 C -0.033 4.033 12 S -0.199 6.199 13 C -0.078 4.078 14 C -0.099 4.099 15 C -0.127 4.127 16 C -0.131 4.131 17 C -0.094 4.094 18 C -0.043 4.043 19 H 0.269 0.731 20 H 0.362 0.638 21 H 0.316 0.684 22 H 0.123 0.877 23 H 0.073 0.927 24 H 0.116 0.884 25 H 0.119 0.881 26 H 0.115 0.885 27 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.467 -5.965 -0.684 6.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.134 4.134 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.569 4.569 8 H 0.079 0.921 9 C 0.170 3.830 10 N -0.376 5.376 11 C -0.182 4.182 12 S 0.043 5.957 13 C -0.191 4.191 14 C -0.123 4.123 15 C -0.147 4.147 16 C -0.152 4.152 17 C -0.115 4.115 18 C -0.048 4.048 19 H 0.079 0.921 20 H 0.181 0.819 21 H 0.126 0.874 22 H 0.142 0.858 23 H 0.092 0.908 24 H 0.134 0.866 25 H 0.137 0.863 26 H 0.133 0.867 27 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.978 -6.433 0.984 7.157 hybrid contribution 0.937 1.890 -1.522 2.601 sum 3.915 -4.544 -0.538 6.022 Atomic orbital electron populations 1.69632 1.05755 1.27503 1.50276 1.24985 0.95050 0.99428 0.93982 0.86358 0.80224 0.82702 0.77791 1.19631 1.20828 1.20621 1.21696 0.93805 0.89800 1.51570 0.92123 1.17812 0.86962 0.89561 0.88623 1.59484 1.21989 1.52677 1.03415 1.24439 0.96316 1.02393 0.95024 1.85430 1.37559 1.57698 1.14979 1.22019 1.01753 0.98830 0.96477 1.20265 0.97615 0.95969 0.98464 1.20828 1.00735 1.00593 0.92548 1.20813 0.99395 0.97513 0.97430 1.20749 0.96520 0.96416 0.97804 1.21276 0.96882 0.94413 0.92254 0.92105 0.81944 0.87354 0.85850 0.90796 0.86634 0.86309 0.86706 0.86620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.68 9.83 55.43 0.54 -22.13 15 2 C 0.07 1.72 4.96 -17.82 -0.09 1.63 15 3 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 15 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 15 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 15 6 H -0.28 -6.35 7.11 56.52 0.40 -5.94 15 7 C -0.53 -13.71 8.12 -34.44 -0.28 -13.99 15 8 H 0.06 1.65 7.73 -52.48 -0.41 1.25 15 9 C 0.26 6.29 0.69 -133.22 -0.09 6.20 15 10 N -0.84 -19.32 8.78 -0.58 -0.01 -19.33 15 11 C -0.03 -0.78 6.25 37.76 0.24 -0.55 15 12 S -0.20 -4.36 23.06 -107.50 -2.48 -6.84 15 13 C -0.08 -1.68 6.48 -39.13 -0.25 -1.93 15 14 C -0.10 -1.80 10.05 -39.44 -0.40 -2.20 15 15 C -0.13 -2.05 10.08 -39.63 -0.40 -2.45 15 16 C -0.13 -2.18 10.00 -39.74 -0.40 -2.58 15 17 C -0.09 -1.85 9.54 -39.27 -0.37 -2.22 15 18 C -0.04 -0.96 4.88 -103.79 -0.51 -1.46 15 19 H 0.27 6.56 8.31 -40.82 -0.34 6.22 15 20 H 0.36 8.76 6.71 -39.29 -0.26 8.49 15 21 H 0.32 6.85 7.74 -39.29 -0.30 6.54 15 22 H 0.12 3.14 6.32 -51.93 -0.33 2.81 15 23 H 0.07 1.71 8.10 -51.93 -0.42 1.28 15 24 H 0.12 1.85 8.06 -52.49 -0.42 1.42 15 25 H 0.12 1.50 8.06 -52.49 -0.42 1.07 15 26 H 0.11 1.54 8.06 -52.49 -0.42 1.12 15 27 H 0.12 2.13 7.17 -52.49 -0.38 1.75 15 LS Contribution 239.85 15.07 3.61 3.61 Total: -1.00 -26.23 239.85 -8.40 -34.63 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -2.50 Total: 14.28 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: -2.55 Total: -19.55 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: 0.54 Total: -41.46 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: -4.36 SS G_CDS: -2.48 Total: -6.84 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -26.23 -8.40 -34.63 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084350330.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.579 kcal (2) G-P(sol) polarization free energy of solvation -26.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds