Wall clock time and date at job start Mon Mar 30 2020 02:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99624 * 2 1 4 4 H 1.48507 * 109.46951 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47122 * 299.99585 * 3 2 1 6 6 H 1.48496 * 109.47369 * 59.99907 * 3 2 1 7 7 C 1.37870 * 119.99756 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99829 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00661 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.26525 * 58.06748 * 9 7 2 11 11 C 1.54145 * 109.27631 * 298.54721 * 9 7 2 12 12 S 1.83299 * 101.11378 * 268.09364 * 11 9 7 13 13 C 1.77524 * 96.58087 * 335.20451 * 12 11 9 14 14 C 1.38821 * 130.55389 * 195.47259 * 13 12 11 15 15 C 1.38024 * 120.16062 * 179.32577 * 14 13 12 16 16 C 1.38327 * 119.29139 * 359.97438 * 15 14 13 17 17 C 1.37702 * 120.54286 * 0.16204 * 16 15 14 18 18 C 1.38881 * 108.29359 * 15.13148 * 13 12 11 19 19 H 0.96997 * 120.00067 * 359.97438 * 1 2 3 20 20 H 1.00901 * 111.00051 * 301.92967 * 10 9 7 21 21 H 1.00900 * 110.99992 * 65.88383 * 10 9 7 22 22 H 1.09002 * 111.10168 * 26.06606 * 11 9 7 23 23 H 1.09002 * 111.09834 * 150.12404 * 11 9 7 24 24 H 1.08002 * 119.91966 * 359.31357 * 14 13 12 25 25 H 1.07998 * 120.35517 * 179.97438 * 15 14 13 26 26 H 1.07996 * 119.72846 * 180.15898 * 16 15 14 27 27 H 1.07996 * 119.47089 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 0.3740 -2.5525 -1.1767 11 6 0.3940 -2.5920 1.2784 12 16 1.5447 -3.4561 2.4137 13 6 2.5106 -4.2539 1.1559 14 6 3.4068 -5.3107 1.2405 15 6 4.0394 -5.7761 0.1055 16 6 3.7696 -5.1789 -1.1127 17 6 2.8827 -4.1289 -1.1961 18 6 2.2355 -3.6408 -0.0595 19 1 -0.4850 0.8400 0.0004 20 1 -0.2698 -1.7756 -1.1835 21 1 0.9137 -2.5823 -2.0287 22 1 0.1421 -1.6005 1.6548 23 1 -0.5050 -3.1837 1.1057 24 1 3.6098 -5.7696 2.1969 25 1 4.7375 -6.5978 0.1678 26 1 4.2586 -5.5392 -2.0057 27 1 2.6852 -3.6752 -2.1561 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084350330.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:21 Heat of formation + Delta-G solvation = 10.420382 kcal Electronic energy + Delta-G solvation = -12924.055945 eV Core-core repulsion = 10771.792812 eV Total energy + Delta-G solvation = -2152.263133 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 221.057 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.28952 -37.38208 -33.80157 -31.86962 -30.98720 -29.35327 -27.43783 -23.99763 -23.41900 -21.18662 -18.71031 -18.46204 -16.99032 -16.23672 -16.08746 -15.87205 -15.43133 -15.04200 -14.05550 -13.89726 -13.82774 -13.72793 -13.01537 -12.90186 -12.74192 -12.49295 -12.00034 -11.97583 -11.60077 -11.08801 -10.77279 -10.42216 -9.64186 -9.25460 -8.32534 -8.07596 -6.43083 0.42659 0.55499 0.92850 1.33333 1.38665 1.48017 1.53339 2.33175 2.90664 2.98697 3.91895 4.09139 4.21698 4.38149 4.47940 4.59689 4.64047 4.91289 4.95320 5.17743 5.26149 5.51425 5.59582 5.63841 5.73389 5.96047 6.15259 6.50737 6.84263 7.06224 7.33787 8.75251 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.032885 B = 0.011426 C = 0.010462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.243507 B = 2450.058273 C = 2675.613030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.034 3.966 3 Si 0.954 3.046 4 H -0.279 1.279 5 H -0.274 1.274 6 H -0.280 1.280 7 C -0.543 4.543 8 H 0.039 0.961 9 C 0.260 3.740 10 N -0.838 5.838 11 C -0.032 4.032 12 S -0.204 6.204 13 C -0.105 4.105 14 C -0.102 4.102 15 C -0.112 4.112 16 C -0.120 4.120 17 C -0.110 4.110 18 C -0.079 4.079 19 H 0.271 0.729 20 H 0.353 0.647 21 H 0.321 0.679 22 H 0.099 0.901 23 H 0.069 0.931 24 H 0.138 0.862 25 H 0.166 0.834 26 H 0.156 0.844 27 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.146 -7.354 -1.293 9.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.167 4.167 3 Si 0.780 3.220 4 H -0.204 1.204 5 H -0.200 1.200 6 H -0.205 1.205 7 C -0.583 4.583 8 H 0.057 0.943 9 C 0.167 3.833 10 N -0.369 5.369 11 C -0.181 4.181 12 S 0.037 5.963 13 C -0.217 4.217 14 C -0.126 4.126 15 C -0.131 4.131 16 C -0.140 4.140 17 C -0.131 4.131 18 C -0.084 4.084 19 H 0.081 0.919 20 H 0.170 0.830 21 H 0.132 0.868 22 H 0.118 0.882 23 H 0.088 0.912 24 H 0.156 0.844 25 H 0.184 0.816 26 H 0.173 0.827 27 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.660 -7.836 0.361 9.124 hybrid contribution 0.486 2.225 -1.361 2.653 sum 5.146 -5.611 -1.000 7.679 Atomic orbital electron populations 1.69704 1.06352 1.28083 1.50079 1.25534 0.95767 1.01634 0.93736 0.85561 0.78683 0.79816 0.77900 1.20368 1.19990 1.20524 1.21748 0.92823 0.91391 1.52326 0.94269 1.17794 0.87222 0.89799 0.88500 1.59478 1.21845 1.51936 1.03672 1.24204 0.96754 1.01250 0.95864 1.85231 1.37745 1.58113 1.15229 1.22242 1.03414 1.00598 0.95486 1.20693 0.96541 0.94814 1.00556 1.21386 0.99857 1.00682 0.91195 1.21295 0.97624 0.95663 0.99418 1.20986 0.97304 0.97643 0.97126 1.21252 0.98143 0.95114 0.93873 0.91908 0.82983 0.86806 0.88237 0.91214 0.84427 0.81609 0.82684 0.86303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.62 9.83 21.45 0.21 -46.41 15 2 C 0.03 1.77 4.96 84.65 0.42 2.19 15 3 Si 0.95 42.08 29.54 68.60 2.03 44.10 15 4 H -0.28 -12.51 7.11 99.48 0.71 -11.80 15 5 H -0.27 -11.68 7.11 99.48 0.71 -10.98 15 6 H -0.28 -12.22 7.11 99.48 0.71 -11.51 15 7 C -0.54 -28.73 8.12 25.60 0.21 -28.52 15 8 H 0.04 2.19 7.73 -2.91 -0.02 2.17 15 9 C 0.26 12.65 0.69 2.47 0.00 12.65 15 10 N -0.84 -39.07 8.78 -155.74 -1.37 -40.44 15 11 C -0.03 -1.55 6.25 72.37 0.45 -1.09 15 12 S -0.20 -9.09 23.06 -56.49 -1.30 -10.39 15 13 C -0.10 -4.42 6.48 22.56 0.15 -4.28 15 14 C -0.10 -3.43 10.05 22.36 0.22 -3.20 15 15 C -0.11 -3.06 10.08 22.24 0.22 -2.84 15 16 C -0.12 -3.50 10.00 22.16 0.22 -3.28 15 17 C -0.11 -4.14 9.54 22.47 0.21 -3.93 15 18 C -0.08 -3.49 4.88 -19.33 -0.09 -3.59 15 19 H 0.27 13.34 8.31 -92.71 -0.77 12.57 15 20 H 0.35 17.46 6.71 -89.69 -0.60 16.86 15 21 H 0.32 14.07 7.74 -89.69 -0.69 13.38 15 22 H 0.10 5.27 6.32 -2.39 -0.02 5.25 15 23 H 0.07 3.34 8.10 -2.39 -0.02 3.32 15 24 H 0.14 3.92 8.06 -2.91 -0.02 3.90 15 25 H 0.17 3.03 8.06 -2.91 -0.02 3.01 15 26 H 0.16 3.28 8.06 -2.91 -0.02 3.26 15 27 H 0.12 4.24 7.17 -2.91 -0.02 4.22 15 Total: -1.00 -56.86 239.85 1.49 -55.37 By element: Atomic # 1 Polarization: 33.75 SS G_CDS: -0.09 Total: 33.65 kcal Atomic # 6 Polarization: -37.91 SS G_CDS: 2.02 Total: -35.89 kcal Atomic # 7 Polarization: -85.69 SS G_CDS: -1.16 Total: -86.85 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.10 kcal Atomic # 16 Polarization: -9.09 SS G_CDS: -1.30 Total: -10.39 kcal Total: -56.86 1.49 -55.37 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084350330.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.793 kcal (2) G-P(sol) polarization free energy of solvation -56.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds