Wall clock time and date at job start Mon Mar 30 2020 03:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99859 * 2 1 4 4 H 1.48494 * 109.47364 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46911 * 299.99921 * 3 2 1 6 6 H 1.48503 * 109.47074 * 59.99606 * 3 2 1 7 7 C 1.37877 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99882 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00305 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47263 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.46861 * 305.00416 * 10 9 7 12 12 C 1.50706 * 109.46927 * 65.00039 * 10 9 7 13 13 O 1.20825 * 119.99859 * 119.99464 * 12 10 9 14 14 O 1.34224 * 120.00295 * 300.00423 * 12 10 9 15 15 C 1.50694 * 109.46930 * 185.00053 * 10 9 7 16 16 C 1.38227 * 119.62000 * 274.72824 * 15 10 9 17 17 C 1.38631 * 119.16146 * 179.75667 * 16 15 10 18 18 C 1.38671 * 118.41924 * 0.51175 * 17 16 15 19 19 C 1.38189 * 119.16456 * 359.72994 * 18 17 16 20 20 N 1.31852 * 119.61765 * 95.00474 * 15 10 9 21 21 H 0.96995 * 120.00618 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46633 * 60.00116 * 9 7 2 23 23 H 1.08997 * 109.47180 * 300.00079 * 9 7 2 24 24 H 0.96700 * 117.00196 * 179.97438 * 14 12 10 25 25 H 1.08003 * 120.42074 * 359.97438 * 16 15 10 26 26 H 1.07997 * 120.79142 * 180.26466 * 17 16 15 27 27 H 1.08004 * 120.42050 * 179.71136 * 18 17 16 28 28 H 1.07993 * 119.61633 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 1 2.9295 -3.5551 -0.8412 12 6 3.0282 -3.6536 1.2883 13 8 2.9822 -4.6067 2.0295 14 8 3.7763 -2.5873 1.6120 15 6 1.4960 -4.9636 -0.1233 16 6 0.9913 -5.5719 1.0107 17 6 0.2991 -6.7664 0.8852 18 6 0.1490 -7.3124 -0.3807 19 6 0.6857 -6.6495 -1.4679 20 7 1.3342 -5.5118 -1.3115 21 1 -0.4851 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8898 23 1 0.6241 -2.5568 0.8902 24 1 4.2602 -2.6280 2.4482 25 1 1.1313 -5.1205 1.9818 26 1 -0.1101 -7.2621 1.7531 27 1 -0.3804 -8.2442 -0.5151 28 1 0.5728 -7.0680 -2.4571 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084451819.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:31 Heat of formation + Delta-G solvation = -59.352969 kcal Electronic energy + Delta-G solvation = -14678.818040 eV Core-core repulsion = 12080.776437 eV Total energy + Delta-G solvation = -2598.041604 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.38038 -39.09383 -35.54486 -34.31498 -32.31305 -31.86157 -29.48442 -25.96833 -23.18289 -22.79317 -22.44158 -19.91782 -17.53905 -16.74123 -16.34748 -16.11048 -15.18592 -15.00537 -14.58692 -14.30407 -13.50853 -13.09842 -12.82153 -12.45949 -12.28455 -11.67150 -11.46131 -11.02457 -10.84917 -10.62784 -10.53735 -9.78968 -9.68685 -9.36515 -9.24029 -8.98252 -8.46457 -8.39719 -6.02917 -4.04740 1.48415 1.68229 2.83923 3.31966 3.39757 3.44931 3.63896 4.21753 4.45984 4.83813 5.10918 5.13220 5.33688 5.40541 5.56971 5.74819 5.99024 6.11373 6.20758 6.37823 6.52046 6.56567 7.02616 7.16012 7.47734 7.52390 7.95937 8.26160 8.37910 8.58034 9.02784 9.59266 11.08640 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.036623 B = 0.008487 C = 0.007517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.364869 B = 3298.220973 C = 3723.849061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.514 4.514 8 H 0.074 0.926 9 C 0.040 3.960 10 C -0.033 4.033 11 H 0.117 0.883 12 C 0.504 3.496 13 O -0.542 6.542 14 O -0.481 6.481 15 C 0.146 3.854 16 C -0.137 4.137 17 C -0.087 4.087 18 C -0.184 4.184 19 C 0.089 3.911 20 N -0.478 5.478 21 H 0.260 0.740 22 H 0.039 0.961 23 H 0.023 0.977 24 H 0.393 0.607 25 H 0.148 0.852 26 H 0.129 0.871 27 H 0.128 0.872 28 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.543 -10.258 1.407 10.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.195 1.195 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.552 4.552 8 H 0.092 0.908 9 C 0.002 3.998 10 C -0.053 4.053 11 H 0.135 0.865 12 C 0.349 3.651 13 O -0.434 6.434 14 O -0.288 6.288 15 C 0.008 3.992 16 C -0.156 4.156 17 C -0.113 4.113 18 C -0.204 4.204 19 C -0.068 4.068 20 N -0.186 5.186 21 H 0.070 0.930 22 H 0.057 0.943 23 H 0.041 0.959 24 H 0.249 0.751 25 H 0.165 0.835 26 H 0.147 0.853 27 H 0.146 0.854 28 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.516 -9.946 0.482 10.271 hybrid contribution 0.226 0.391 1.312 1.388 sum 2.741 -9.555 1.795 10.101 Atomic orbital electron populations 1.69979 1.06145 1.26683 1.50850 1.24994 0.94779 0.99356 0.95240 0.86464 0.80247 0.83454 0.77406 1.19466 1.21153 1.21208 1.21312 0.93770 0.89765 1.50376 0.90753 1.19158 0.92613 0.89146 0.98858 1.20092 0.98093 0.93787 0.93325 0.86525 1.23235 0.75800 0.78363 0.87697 1.90595 1.63130 1.36372 1.53333 1.84856 1.57822 1.42734 1.43428 1.20817 0.95153 0.94622 0.88560 1.22386 0.96213 0.95964 1.01044 1.21562 0.96662 0.95610 0.97469 1.22036 1.02742 1.01648 0.93991 1.22606 0.94363 0.91052 0.98817 1.67353 1.14931 1.10480 1.25875 0.92992 0.94325 0.95917 0.75102 0.83468 0.85326 0.85421 0.83127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.39 13.29 55.43 0.74 -25.65 15 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 15 3 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 15 4 H -0.27 -6.24 7.11 56.52 0.40 -5.83 15 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 15 6 H -0.29 -6.75 7.11 56.52 0.40 -6.34 15 7 C -0.51 -13.82 8.05 -34.44 -0.28 -14.09 15 8 H 0.07 1.94 6.36 -52.48 -0.33 1.60 15 9 C 0.04 1.00 4.42 -27.88 -0.12 0.88 15 10 C -0.03 -0.70 2.60 -92.92 -0.24 -0.94 15 11 H 0.12 2.43 8.14 -51.93 -0.42 2.00 15 12 C 0.50 10.03 7.39 36.01 0.27 10.30 15 13 O -0.54 -10.92 13.85 -18.75 -0.26 -11.18 15 14 O -0.48 -8.73 11.02 -39.24 -0.43 -9.16 15 15 C 0.15 2.93 5.69 -82.59 -0.47 2.46 15 16 C -0.14 -2.52 8.28 -39.44 -0.33 -2.84 15 17 C -0.09 -1.31 10.18 -39.28 -0.40 -1.71 15 18 C -0.18 -2.53 10.11 -39.44 -0.40 -2.93 15 19 C 0.09 1.37 11.18 -17.55 -0.20 1.17 15 20 N -0.48 -9.16 10.27 -9.48 -0.10 -9.26 15 21 H 0.26 7.25 8.31 -40.82 -0.34 6.91 15 22 H 0.04 1.05 8.14 -51.93 -0.42 0.63 15 23 H 0.02 0.61 8.14 -51.93 -0.42 0.18 15 24 H 0.39 4.94 9.10 45.56 0.41 5.35 15 25 H 0.15 2.80 5.92 -52.48 -0.31 2.49 15 26 H 0.13 1.54 8.06 -52.49 -0.42 1.12 15 27 H 0.13 1.29 8.06 -52.48 -0.42 0.87 15 28 H 0.15 1.79 8.06 -52.49 -0.42 1.37 15 LS Contribution 250.95 15.07 3.78 3.78 Total: -1.00 -32.00 250.95 -5.46 -37.46 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -1.90 Total: 4.00 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -2.26 Total: -6.22 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 0.64 Total: -34.91 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.69 Total: -20.34 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -32.00 -5.46 -37.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084451819.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.892 kcal (2) G-P(sol) polarization free energy of solvation -32.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds