Wall clock time and date at job start Mon Mar 30 2020 03:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99859 * 2 1 4 4 H 1.48494 * 109.47364 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46911 * 299.99921 * 3 2 1 6 6 H 1.48503 * 109.47074 * 59.99606 * 3 2 1 7 7 C 1.37877 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99882 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00305 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47263 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.46861 * 305.00416 * 10 9 7 12 12 C 1.50706 * 109.46927 * 65.00039 * 10 9 7 13 13 O 1.20825 * 119.99859 * 119.99464 * 12 10 9 14 14 O 1.34224 * 120.00295 * 300.00423 * 12 10 9 15 15 C 1.50694 * 109.46930 * 185.00053 * 10 9 7 16 16 C 1.38227 * 119.62000 * 274.72824 * 15 10 9 17 17 C 1.38631 * 119.16146 * 179.75667 * 16 15 10 18 18 C 1.38671 * 118.41924 * 0.51175 * 17 16 15 19 19 C 1.38189 * 119.16456 * 359.72994 * 18 17 16 20 20 N 1.31852 * 119.61765 * 95.00474 * 15 10 9 21 21 H 0.96995 * 120.00618 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46633 * 60.00116 * 9 7 2 23 23 H 1.08997 * 109.47180 * 300.00079 * 9 7 2 24 24 H 0.96700 * 117.00196 * 179.97438 * 14 12 10 25 25 H 1.08003 * 120.42074 * 359.97438 * 16 15 10 26 26 H 1.07997 * 120.79142 * 180.26466 * 17 16 15 27 27 H 1.08004 * 120.42050 * 179.71136 * 18 17 16 28 28 H 1.07993 * 119.61633 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 1 2.9295 -3.5551 -0.8412 12 6 3.0282 -3.6536 1.2883 13 8 2.9822 -4.6067 2.0295 14 8 3.7763 -2.5873 1.6120 15 6 1.4960 -4.9636 -0.1233 16 6 0.9913 -5.5719 1.0107 17 6 0.2991 -6.7664 0.8852 18 6 0.1490 -7.3124 -0.3807 19 6 0.6857 -6.6495 -1.4679 20 7 1.3342 -5.5118 -1.3115 21 1 -0.4851 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8898 23 1 0.6241 -2.5568 0.8902 24 1 4.2602 -2.6280 2.4482 25 1 1.1313 -5.1205 1.9818 26 1 -0.1101 -7.2621 1.7531 27 1 -0.3804 -8.2442 -0.5151 28 1 0.5728 -7.0680 -2.4571 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084451819.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:31 Heat of formation + Delta-G solvation = -81.407023 kcal Electronic energy + Delta-G solvation = -14679.774376 eV Core-core repulsion = 12080.776437 eV Total energy + Delta-G solvation = -2598.997939 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.83583 -40.48963 -37.04916 -36.12349 -34.09919 -33.23675 -31.04000 -27.83619 -24.56246 -24.38701 -24.07416 -21.45871 -19.15040 -18.50089 -17.82467 -17.53903 -16.78146 -16.58699 -16.13297 -15.91417 -14.92177 -14.56758 -14.34580 -14.13136 -13.85045 -13.42881 -13.03264 -12.84161 -12.49464 -12.43865 -12.23353 -11.63221 -11.27108 -11.25009 -10.69494 -10.54505 -10.34187 -9.80810 -8.15683 -6.24548 0.20790 0.43710 1.25062 1.45363 1.46540 1.60400 2.20310 2.46082 2.92677 3.19228 3.45605 3.84379 4.05417 4.22527 4.26918 4.41074 4.47002 4.56507 4.79136 4.94461 5.22274 5.31837 5.37465 5.45059 5.68731 5.83055 5.85920 6.17168 6.89812 7.07918 7.17410 7.43932 8.96997 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.036623 B = 0.008487 C = 0.007517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.364869 B = 3298.220973 C = 3723.849061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.000 4.000 3 Si 0.966 3.034 4 H -0.257 1.257 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.521 4.521 8 H 0.083 0.917 9 C 0.054 3.946 10 C -0.029 4.029 11 H 0.113 0.887 12 C 0.509 3.491 13 O -0.544 6.544 14 O -0.487 6.487 15 C 0.114 3.886 16 C -0.158 4.158 17 C -0.086 4.086 18 C -0.165 4.165 19 C 0.080 3.920 20 N -0.509 5.509 21 H 0.262 0.738 22 H 0.006 0.994 23 H -0.004 1.004 24 H 0.418 0.582 25 H 0.133 0.867 26 H 0.163 0.837 27 H 0.176 0.824 28 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.984 -11.495 1.479 11.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.180 1.180 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.559 4.559 8 H 0.101 0.899 9 C 0.016 3.984 10 C -0.049 4.049 11 H 0.131 0.869 12 C 0.353 3.647 13 O -0.437 6.437 14 O -0.297 6.297 15 C -0.022 4.022 16 C -0.178 4.178 17 C -0.111 4.111 18 C -0.185 4.185 19 C -0.077 4.077 20 N -0.219 5.219 21 H 0.071 0.929 22 H 0.024 0.976 23 H 0.014 0.986 24 H 0.278 0.722 25 H 0.151 0.849 26 H 0.181 0.819 27 H 0.194 0.806 28 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 2.988 -11.184 0.577 11.590 hybrid contribution 0.044 0.648 1.274 1.430 sum 3.032 -10.536 1.851 11.118 Atomic orbital electron populations 1.70117 1.07923 1.27644 1.52250 1.25917 0.95580 1.03249 0.94932 0.85374 0.79464 0.78733 0.77322 1.18016 1.20956 1.20825 1.21677 0.94293 0.90496 1.49412 0.89936 1.18831 0.92765 0.90845 0.95927 1.19832 0.97328 0.93538 0.94181 0.86902 1.22879 0.75948 0.78671 0.87185 1.90585 1.63314 1.36612 1.53172 1.84762 1.57767 1.41967 1.45244 1.20632 0.97033 0.94832 0.89717 1.22363 0.97805 0.97707 0.99878 1.22004 0.95323 0.94211 0.99607 1.22543 1.00850 1.02519 0.92556 1.23331 0.93254 0.89933 1.01220 1.67299 1.16504 1.12401 1.25675 0.92933 0.97567 0.98577 0.72215 0.84925 0.81923 0.80631 0.79663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.62 13.29 21.45 0.28 -56.34 15 2 C 0.00 0.02 5.46 84.65 0.46 0.48 15 3 Si 0.97 43.72 29.54 68.60 2.03 45.75 15 4 H -0.26 -10.94 7.11 99.48 0.71 -10.23 15 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 15 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 15 7 C -0.52 -28.51 8.05 25.60 0.21 -28.31 15 8 H 0.08 4.30 6.36 -2.91 -0.02 4.28 15 9 C 0.05 2.85 4.42 29.85 0.13 2.98 15 10 C -0.03 -1.27 2.60 -12.29 -0.03 -1.30 15 11 H 0.11 4.89 8.14 -2.39 -0.02 4.87 15 12 C 0.51 20.45 7.39 71.24 0.53 20.98 15 13 O -0.54 -21.96 13.85 21.97 0.30 -21.66 15 14 O -0.49 -17.41 11.02 -51.35 -0.57 -17.98 15 15 C 0.11 4.67 5.69 42.55 0.24 4.91 15 16 C -0.16 -5.81 8.28 22.36 0.19 -5.63 15 17 C -0.09 -2.38 10.18 22.47 0.23 -2.15 15 18 C -0.17 -3.93 10.11 22.36 0.23 -3.70 15 19 C 0.08 2.27 11.18 84.67 0.95 3.22 15 20 N -0.51 -19.46 10.27 -183.89 -1.89 -21.35 15 21 H 0.26 14.89 8.31 -92.71 -0.77 14.11 15 22 H 0.01 0.35 8.14 -2.38 -0.02 0.33 15 23 H 0.00 -0.24 8.14 -2.39 -0.02 -0.25 15 24 H 0.42 9.96 9.10 -74.06 -0.67 9.29 15 25 H 0.13 5.16 5.92 -2.91 -0.02 5.14 15 26 H 0.16 3.30 8.06 -2.91 -0.02 3.28 15 27 H 0.18 2.50 8.06 -2.91 -0.02 2.47 15 28 H 0.19 3.77 8.06 -2.91 -0.02 3.75 15 Total: -1.00 -70.66 250.95 3.80 -66.86 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 0.51 Total: 13.24 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: 3.12 Total: -8.51 kcal Atomic # 7 Polarization: -76.09 SS G_CDS: -1.60 Total: -77.69 kcal Atomic # 8 Polarization: -39.38 SS G_CDS: -0.26 Total: -39.64 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -70.66 3.80 -66.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084451819.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.547 kcal (2) G-P(sol) polarization free energy of solvation -70.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds