Wall clock time and date at job start Mon Mar 30 2020 03:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09009 * 109.46866 * 305.00034 * 10 9 7 12 12 C 1.50702 * 109.47406 * 64.99564 * 10 9 7 13 13 O 1.20828 * 119.99666 * 0.02562 * 12 10 9 14 14 O 1.34226 * 120.00263 * 180.02562 * 12 10 9 15 15 C 1.50700 * 109.47144 * 185.00130 * 10 9 7 16 16 C 1.38671 * 120.42006 * 120.00054 * 15 10 9 17 17 C 1.38623 * 118.42015 * 179.97438 * 16 15 10 18 18 C 1.38224 * 119.16352 * 359.97438 * 17 16 15 19 19 N 1.31862 * 120.76212 * 359.97438 * 18 17 16 20 20 C 1.31883 * 121.72055 * 359.70728 * 19 18 17 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 0.96700 * 116.99995 * 180.02562 * 14 12 10 25 25 H 1.08001 * 120.78928 * 359.97438 * 16 15 10 26 26 H 1.08005 * 120.42001 * 180.02562 * 17 16 15 27 27 H 1.07995 * 119.62406 * 179.97438 * 18 17 16 28 28 H 1.08009 * 119.61580 * 180.30924 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9293 -3.5515 -0.8518 12 6 3.0279 -3.6596 1.2773 13 8 2.8124 -2.8145 2.1136 14 8 3.9645 -4.5960 1.4953 15 6 1.4956 -4.9631 -0.1402 16 6 1.7324 -5.8056 -1.2159 17 6 1.0201 -6.9923 -1.2938 18 6 0.1044 -7.2945 -0.3035 19 7 -0.0941 -6.4697 0.7060 20 6 0.5699 -5.3355 0.8156 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 4.4403 -4.5537 2.3361 25 1 2.4545 -5.5434 -1.9750 26 1 1.1792 -7.6725 -2.1175 27 1 -0.4548 -8.2168 -0.3570 28 1 0.3838 -4.6875 1.6595 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084451824.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:23 Heat of formation + Delta-G solvation = -65.836736 kcal Electronic energy + Delta-G solvation = -14623.195518 eV Core-core repulsion = 12024.872757 eV Total energy + Delta-G solvation = -2598.322761 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.28662 -39.21195 -35.64452 -34.41927 -32.53894 -31.74248 -29.29786 -26.02297 -23.39306 -22.87246 -22.48524 -19.61799 -17.51303 -17.01596 -16.50335 -16.31292 -15.42584 -15.03178 -14.48800 -14.17225 -13.61451 -13.03669 -12.81927 -12.68227 -12.37645 -11.60440 -11.49297 -11.01660 -10.86234 -10.65103 -10.46928 -9.95939 -9.75023 -9.45205 -9.31497 -9.10966 -8.59206 -8.36310 -5.99974 -4.00748 1.34179 1.52175 2.93985 3.33363 3.39966 3.44547 3.65605 4.10703 4.47246 4.67543 5.02337 5.11543 5.25209 5.29189 5.37759 5.67352 5.86201 5.89824 6.09161 6.29559 6.47783 6.55979 6.92918 7.06646 7.47707 7.59439 7.92898 8.20445 8.29449 8.59955 8.98235 9.61352 11.11670 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.035393 B = 0.008381 C = 0.007543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.923411 B = 3340.137525 C = 3711.382834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.060 3.940 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.508 4.508 8 H 0.052 0.948 9 C 0.040 3.960 10 C -0.031 4.031 11 H 0.106 0.894 12 C 0.477 3.523 13 O -0.476 6.476 14 O -0.531 6.531 15 C -0.110 4.110 16 C -0.068 4.068 17 C -0.175 4.175 18 C 0.084 3.916 19 N -0.485 5.485 20 C 0.109 3.891 21 H 0.261 0.739 22 H 0.032 0.968 23 H 0.034 0.966 24 H 0.397 0.603 25 H 0.135 0.865 26 H 0.132 0.868 27 H 0.151 0.849 28 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.430 -12.455 -1.903 13.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.546 4.546 8 H 0.071 0.929 9 C 0.004 3.996 10 C -0.051 4.051 11 H 0.124 0.876 12 C 0.317 3.683 13 O -0.360 6.360 14 O -0.343 6.343 15 C -0.112 4.112 16 C -0.094 4.094 17 C -0.195 4.195 18 C -0.073 4.073 19 N -0.193 5.193 20 C -0.048 4.048 21 H 0.071 0.929 22 H 0.050 0.950 23 H 0.052 0.948 24 H 0.254 0.746 25 H 0.153 0.847 26 H 0.150 0.850 27 H 0.168 0.832 28 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.367 -12.320 -1.386 12.847 hybrid contribution 1.406 1.250 -0.157 1.888 sum 4.773 -11.070 -1.543 12.154 Atomic orbital electron populations 1.69948 1.05982 1.26699 1.50815 1.24909 0.94814 0.99137 0.95233 0.86568 0.79941 0.83454 0.77901 1.20743 1.21185 1.19926 1.20963 0.92636 0.90424 1.50551 0.92929 1.19167 0.92620 0.89121 0.98730 1.20364 0.97292 0.94539 0.92857 0.87645 1.23499 0.77627 0.77639 0.89496 1.90757 1.64276 1.35656 1.45276 1.84595 1.50787 1.54477 1.44425 1.20771 0.98162 0.96177 0.96067 1.21513 0.97835 0.92971 0.97046 1.22060 0.98634 0.98090 1.00701 1.22694 0.95970 0.98397 0.90246 1.67696 1.24072 1.03962 1.23549 1.22708 0.91251 0.92678 0.98124 0.92937 0.94958 0.94831 0.74558 0.84723 0.85049 0.83190 0.82783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.84 13.29 55.43 0.74 -26.10 15 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 15 3 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 15 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 15 6 H -0.27 -6.72 7.11 56.52 0.40 -6.32 15 7 C -0.51 -14.13 7.75 -34.44 -0.27 -14.40 15 8 H 0.05 1.44 7.61 -52.49 -0.40 1.05 15 9 C 0.04 1.01 3.85 -27.88 -0.11 0.90 15 10 C -0.03 -0.61 2.45 -92.92 -0.23 -0.83 15 11 H 0.11 1.92 7.93 -51.92 -0.41 1.51 15 12 C 0.48 9.45 6.91 36.01 0.25 9.70 15 13 O -0.48 -11.25 15.74 -18.75 -0.30 -11.54 15 14 O -0.53 -8.26 13.34 -39.25 -0.52 -8.78 15 15 C -0.11 -1.91 4.72 -104.48 -0.49 -2.40 15 16 C -0.07 -0.97 9.81 -39.28 -0.39 -1.36 15 17 C -0.18 -2.19 10.11 -39.44 -0.40 -2.59 15 18 C 0.08 1.15 11.18 -17.54 -0.20 0.95 15 19 N -0.48 -8.21 10.36 -13.25 -0.14 -8.35 15 20 C 0.11 1.97 10.05 -17.55 -0.18 1.79 15 21 H 0.26 7.41 8.31 -40.82 -0.34 7.08 15 22 H 0.03 0.88 7.43 -51.93 -0.39 0.49 15 23 H 0.03 0.88 8.14 -51.93 -0.42 0.45 15 24 H 0.40 4.39 9.10 45.56 0.41 4.81 15 25 H 0.13 1.61 8.00 -52.49 -0.42 1.19 15 26 H 0.13 1.18 8.06 -52.48 -0.42 0.76 15 27 H 0.15 1.53 8.06 -52.49 -0.42 1.11 15 28 H 0.15 2.89 7.67 -52.48 -0.40 2.49 15 LS Contribution 256.19 15.07 3.86 3.86 Total: -1.00 -33.36 256.19 -5.49 -38.85 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -2.01 Total: 1.69 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -2.10 Total: -6.61 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: 0.60 Total: -34.45 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.82 Total: -20.32 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -33.36 -5.49 -38.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084451824.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.988 kcal (2) G-P(sol) polarization free energy of solvation -33.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds