Wall clock time and date at job start Mon Mar 30 2020 03:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09009 * 109.46866 * 305.00034 * 10 9 7 12 12 C 1.50702 * 109.47406 * 64.99564 * 10 9 7 13 13 O 1.20828 * 119.99666 * 0.02562 * 12 10 9 14 14 O 1.34226 * 120.00263 * 180.02562 * 12 10 9 15 15 C 1.50700 * 109.47144 * 185.00130 * 10 9 7 16 16 C 1.38671 * 120.42006 * 120.00054 * 15 10 9 17 17 C 1.38623 * 118.42015 * 179.97438 * 16 15 10 18 18 C 1.38224 * 119.16352 * 359.97438 * 17 16 15 19 19 N 1.31862 * 120.76212 * 359.97438 * 18 17 16 20 20 C 1.31883 * 121.72055 * 359.70728 * 19 18 17 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 0.96700 * 116.99995 * 180.02562 * 14 12 10 25 25 H 1.08001 * 120.78928 * 359.97438 * 16 15 10 26 26 H 1.08005 * 120.42001 * 180.02562 * 17 16 15 27 27 H 1.07995 * 119.62406 * 179.97438 * 18 17 16 28 28 H 1.08009 * 119.61580 * 180.30924 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9293 -3.5515 -0.8518 12 6 3.0279 -3.6596 1.2773 13 8 2.8124 -2.8145 2.1136 14 8 3.9645 -4.5960 1.4953 15 6 1.4956 -4.9631 -0.1402 16 6 1.7324 -5.8056 -1.2159 17 6 1.0201 -6.9923 -1.2938 18 6 0.1044 -7.2945 -0.3035 19 7 -0.0941 -6.4697 0.7060 20 6 0.5699 -5.3355 0.8156 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 4.4403 -4.5537 2.3361 25 1 2.4545 -5.5434 -1.9750 26 1 1.1792 -7.6725 -2.1175 27 1 -0.4548 -8.2168 -0.3570 28 1 0.3838 -4.6875 1.6595 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084451824.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:23 Heat of formation + Delta-G solvation = -89.431354 kcal Electronic energy + Delta-G solvation = -14624.218658 eV Core-core repulsion = 12024.872757 eV Total energy + Delta-G solvation = -2599.345900 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.67214 -40.59139 -37.14535 -36.09223 -34.42086 -32.97537 -30.88677 -27.84131 -24.80540 -24.48703 -23.87039 -21.17502 -19.02997 -18.71558 -17.94257 -17.76072 -16.90181 -16.61803 -16.35658 -15.41251 -14.91692 -14.56097 -14.29475 -14.12912 -13.90879 -13.49656 -12.97703 -12.92119 -12.50340 -12.41271 -12.36537 -11.72586 -11.54758 -11.23226 -10.65960 -10.55216 -10.38662 -9.88472 -8.18254 -6.25578 0.15633 0.37434 1.36834 1.38577 1.40884 1.50874 2.24516 2.41702 2.90669 3.17123 3.48956 3.78050 3.93352 4.10144 4.16978 4.31075 4.50919 4.67627 4.81202 4.91852 5.20643 5.29864 5.37568 5.55524 5.68057 5.78398 5.81196 6.15865 6.82657 7.02973 7.16169 7.40491 8.94010 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.035393 B = 0.008381 C = 0.007543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.923411 B = 3340.137525 C = 3711.382834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.959 3.041 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.517 4.517 8 H 0.054 0.946 9 C 0.050 3.950 10 C -0.024 4.024 11 H 0.125 0.875 12 C 0.487 3.513 13 O -0.526 6.526 14 O -0.512 6.512 15 C -0.128 4.128 16 C -0.066 4.066 17 C -0.157 4.157 18 C 0.082 3.918 19 N -0.510 5.510 20 C 0.085 3.915 21 H 0.262 0.738 22 H -0.004 1.004 23 H 0.014 0.986 24 H 0.420 0.580 25 H 0.164 0.836 26 H 0.180 0.820 27 H 0.189 0.811 28 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.891 -14.153 -3.544 15.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.784 3.216 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.555 4.555 8 H 0.072 0.928 9 C 0.013 3.987 10 C -0.044 4.044 11 H 0.143 0.857 12 C 0.329 3.671 13 O -0.413 6.413 14 O -0.325 6.325 15 C -0.130 4.130 16 C -0.092 4.092 17 C -0.176 4.176 18 C -0.075 4.075 19 N -0.219 5.219 20 C -0.071 4.071 21 H 0.071 0.929 22 H 0.014 0.986 23 H 0.032 0.968 24 H 0.281 0.719 25 H 0.181 0.819 26 H 0.197 0.803 27 H 0.205 0.795 28 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.864 -14.045 -3.025 15.168 hybrid contribution 0.948 1.592 0.340 1.884 sum 5.813 -12.453 -2.685 14.002 Atomic orbital electron populations 1.70082 1.07588 1.27580 1.52199 1.25816 0.95682 1.02979 0.95092 0.85537 0.78447 0.78999 0.78607 1.19036 1.21073 1.19633 1.21358 0.92872 0.91785 1.49509 0.92814 1.18863 0.93061 0.90781 0.95964 1.20059 0.96670 0.94000 0.93663 0.85684 1.23432 0.77567 0.77200 0.88881 1.90742 1.65882 1.37886 1.46838 1.84508 1.49593 1.52469 1.45945 1.20562 0.98796 0.95911 0.97722 1.21900 0.98255 0.92921 0.96118 1.22551 0.96443 0.97560 1.01035 1.23445 0.96012 0.98744 0.89272 1.67668 1.24599 1.04082 1.25547 1.22400 0.92855 0.93515 0.98294 0.92896 0.98592 0.96762 0.71918 0.81877 0.80298 0.79455 0.85621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.75 13.29 21.45 0.28 -57.46 15 2 C 0.00 0.10 5.46 84.66 0.46 0.56 15 3 Si 0.96 45.59 29.54 68.60 2.03 47.62 15 4 H -0.27 -11.84 7.11 99.48 0.71 -11.14 15 5 H -0.29 -13.39 7.11 99.48 0.71 -12.69 15 6 H -0.27 -12.67 7.11 99.48 0.71 -11.97 15 7 C -0.52 -29.46 7.75 25.60 0.20 -29.26 15 8 H 0.05 2.97 7.61 -2.91 -0.02 2.95 15 9 C 0.05 2.62 3.85 29.85 0.12 2.74 15 10 C -0.02 -0.96 2.45 -12.29 -0.03 -0.99 15 11 H 0.13 4.41 7.93 -2.38 -0.02 4.39 15 12 C 0.49 19.39 6.91 71.24 0.49 19.89 15 13 O -0.53 -25.66 15.74 21.96 0.35 -25.31 15 14 O -0.51 -15.11 13.34 -51.38 -0.69 -15.79 15 15 C -0.13 -4.38 4.72 -19.78 -0.09 -4.47 15 16 C -0.07 -1.69 9.81 22.47 0.22 -1.47 15 17 C -0.16 -3.21 10.11 22.36 0.23 -2.98 15 18 C 0.08 1.99 11.18 84.68 0.95 2.93 15 19 N -0.51 -17.01 10.36 -195.84 -2.03 -19.03 15 20 C 0.09 3.16 10.05 84.67 0.85 4.02 15 21 H 0.26 15.31 8.31 -92.70 -0.77 14.54 15 22 H 0.00 -0.25 7.43 -2.38 -0.02 -0.27 15 23 H 0.01 0.78 8.14 -2.39 -0.02 0.76 15 24 H 0.42 8.51 9.10 -74.06 -0.67 7.84 15 25 H 0.16 3.18 8.00 -2.91 -0.02 3.16 15 26 H 0.18 2.01 8.06 -2.91 -0.02 1.99 15 27 H 0.19 2.99 8.06 -2.91 -0.02 2.96 15 28 H 0.13 5.20 7.67 -2.91 -0.02 5.17 15 Total: -1.00 -75.17 256.19 3.84 -71.33 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: 0.51 Total: 7.69 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: 3.39 Total: -9.05 kcal Atomic # 7 Polarization: -74.75 SS G_CDS: -1.74 Total: -76.50 kcal Atomic # 8 Polarization: -40.76 SS G_CDS: -0.34 Total: -41.10 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -75.17 3.84 -71.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084451824.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.098 kcal (2) G-P(sol) polarization free energy of solvation -75.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds