Wall clock time and date at job start Mon Mar 30 2020 03:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99542 * 2 1 4 4 H 1.48499 * 109.47082 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47010 * 300.00119 * 3 2 1 6 6 H 1.48509 * 109.46988 * 59.99975 * 3 2 1 7 7 C 1.37876 * 120.00445 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00124 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99875 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47285 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.47193 * 54.99841 * 10 9 7 12 12 C 1.50706 * 109.46819 * 295.00168 * 10 9 7 13 13 O 1.20825 * 119.99859 * 239.99256 * 12 10 9 14 14 O 1.34224 * 120.00295 * 60.00215 * 12 10 9 15 15 C 1.50694 * 109.47528 * 174.99854 * 10 9 7 16 16 C 1.38671 * 120.42082 * 239.72332 * 15 10 9 17 17 C 1.38629 * 118.42035 * 179.78003 * 16 15 10 18 18 C 1.38229 * 119.16222 * 0.51746 * 17 16 15 19 19 N 1.31852 * 120.76037 * 359.71924 * 18 17 16 20 20 C 1.31884 * 121.72955 * 0.02562 * 19 18 17 21 21 H 0.96997 * 120.00427 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47453 * 59.99839 * 9 7 2 23 23 H 1.09004 * 109.46993 * 300.00022 * 9 7 2 24 24 H 0.96700 * 117.00196 * 179.97438 * 14 12 10 25 25 H 1.08000 * 120.79052 * 0.02562 * 16 15 10 26 26 H 1.07996 * 120.42017 * 180.21440 * 17 16 15 27 27 H 1.08003 * 119.62125 * 179.74768 * 18 17 16 28 28 H 1.07998 * 119.61943 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8902 2.3966 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 1 2.9296 -3.5551 0.8412 12 6 3.0283 -3.6535 -1.2883 13 8 2.9825 -4.6066 -2.0294 14 8 3.7765 -2.5871 -1.6119 15 6 1.4962 -4.9636 0.1233 16 6 1.7371 -5.8134 1.1923 17 6 1.0211 -6.9981 1.2677 18 6 0.1051 -7.2958 0.2762 19 7 -0.0945 -6.4659 -0.7288 20 6 0.5648 -5.3282 -0.8301 21 1 -0.4850 0.8400 0.0004 22 1 0.6242 -2.5567 -0.8902 23 1 0.6249 -2.5570 0.8897 24 1 4.2610 -2.6281 -2.4477 25 1 2.4624 -5.5567 1.9502 26 1 1.1804 -7.6821 2.0881 27 1 -0.4538 -8.2186 0.3254 28 1 0.3740 -4.6735 -1.6676 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084451826.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:25 Heat of formation + Delta-G solvation = -89.190271 kcal Electronic energy + Delta-G solvation = -14654.550709 eV Core-core repulsion = 12055.215263 eV Total energy + Delta-G solvation = -2599.335446 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.71269 -40.52245 -36.98093 -36.29771 -34.32031 -32.97342 -30.92631 -27.70572 -24.71374 -24.36780 -24.01479 -21.32589 -19.07617 -18.46311 -17.91196 -17.78786 -16.81608 -16.41954 -16.20728 -15.71962 -14.79569 -14.59802 -14.27725 -14.16499 -13.91301 -13.47772 -12.94843 -12.91063 -12.51445 -12.40429 -12.31113 -11.61283 -11.37042 -11.23376 -10.66194 -10.53622 -10.36862 -9.86260 -8.14596 -6.22986 0.19448 0.39043 1.32173 1.45216 1.47183 1.59932 2.35271 2.46624 2.97901 3.20809 3.51347 3.76037 3.94009 4.13746 4.15789 4.46010 4.50883 4.58297 4.77815 4.89372 5.19871 5.29334 5.40954 5.50819 5.72103 5.82863 5.84847 6.19372 6.92541 7.05732 7.19449 7.45871 8.97720 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.036767 B = 0.008365 C = 0.007539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.375973 B = 3346.471571 C = 3713.068451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.000 4.000 3 Si 0.962 3.038 4 H -0.256 1.256 5 H -0.287 1.287 6 H -0.283 1.283 7 C -0.519 4.519 8 H 0.084 0.916 9 C 0.045 3.955 10 C -0.030 4.030 11 H 0.127 0.873 12 C 0.503 3.497 13 O -0.556 6.556 14 O -0.490 6.490 15 C -0.131 4.131 16 C -0.073 4.073 17 C -0.163 4.163 18 C 0.081 3.919 19 N -0.516 5.516 20 C 0.107 3.893 21 H 0.261 0.739 22 H -0.007 1.007 23 H 0.013 0.987 24 H 0.414 0.586 25 H 0.164 0.836 26 H 0.179 0.821 27 H 0.188 0.812 28 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.982 -10.113 3.215 12.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.197 4.197 3 Si 0.788 3.212 4 H -0.179 1.179 5 H -0.213 1.213 6 H -0.209 1.209 7 C -0.557 4.557 8 H 0.102 0.898 9 C 0.008 3.992 10 C -0.050 4.050 11 H 0.145 0.855 12 C 0.347 3.653 13 O -0.448 6.448 14 O -0.301 6.301 15 C -0.133 4.133 16 C -0.099 4.099 17 C -0.182 4.182 18 C -0.076 4.076 19 N -0.225 5.225 20 C -0.049 4.049 21 H 0.070 0.930 22 H 0.011 0.989 23 H 0.031 0.969 24 H 0.274 0.726 25 H 0.181 0.819 26 H 0.196 0.804 27 H 0.204 0.796 28 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.019 -10.441 2.736 11.904 hybrid contribution 0.807 1.370 -0.299 1.618 sum 5.826 -9.072 2.437 11.054 Atomic orbital electron populations 1.70114 1.07896 1.27541 1.52403 1.25888 0.95501 1.03167 0.95135 0.85434 0.79565 0.79074 0.77170 1.17932 1.21320 1.20949 1.21708 0.94340 0.90594 1.49078 0.89826 1.18934 0.92974 0.91076 0.96200 1.20044 0.97037 0.93818 0.94099 0.85488 1.23296 0.75844 0.78453 0.87659 1.90643 1.63836 1.37157 1.53205 1.84768 1.57922 1.42263 1.45125 1.20575 0.98781 0.96365 0.97541 1.21894 0.98568 0.93029 0.96389 1.22513 0.96773 0.97755 1.01196 1.23423 0.96096 0.98732 0.89355 1.67642 1.25345 1.04091 1.25463 1.22288 0.92142 0.93157 0.97327 0.93043 0.98889 0.96857 0.72601 0.81862 0.80390 0.79559 0.85882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.63 13.29 21.45 0.28 -55.34 15 2 C 0.00 0.01 5.46 84.65 0.46 0.48 15 3 Si 0.96 42.79 29.54 68.60 2.03 44.81 15 4 H -0.26 -10.65 7.11 99.48 0.71 -9.94 15 5 H -0.29 -12.75 7.11 99.48 0.71 -12.05 15 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 15 7 C -0.52 -27.18 8.05 25.60 0.21 -26.97 15 8 H 0.08 4.14 6.36 -2.91 -0.02 4.12 15 9 C 0.05 2.24 4.18 29.85 0.12 2.37 15 10 C -0.03 -1.19 2.47 -12.29 -0.03 -1.22 15 11 H 0.13 4.37 7.93 -2.39 -0.02 4.35 15 12 C 0.50 19.66 7.48 71.24 0.53 20.20 15 13 O -0.56 -23.38 15.88 21.97 0.35 -23.03 15 14 O -0.49 -17.20 11.02 -51.35 -0.57 -17.77 15 15 C -0.13 -4.76 4.40 -19.78 -0.09 -4.85 15 16 C -0.07 -2.03 9.81 22.47 0.22 -1.81 15 17 C -0.16 -3.76 10.11 22.36 0.23 -3.54 15 18 C 0.08 2.18 11.18 84.69 0.95 3.13 15 19 N -0.52 -18.79 10.36 -195.84 -2.03 -20.82 15 20 C 0.11 4.28 9.18 84.67 0.78 5.05 15 21 H 0.26 14.66 8.31 -92.71 -0.77 13.89 15 22 H -0.01 -0.40 7.60 -2.39 -0.02 -0.42 15 23 H 0.01 0.70 8.14 -2.38 -0.02 0.68 15 24 H 0.41 10.07 9.10 -74.06 -0.67 9.39 15 25 H 0.16 3.44 8.00 -2.91 -0.02 3.42 15 26 H 0.18 2.41 8.06 -2.91 -0.02 2.39 15 27 H 0.19 3.45 8.06 -2.91 -0.02 3.43 15 28 H 0.12 5.41 7.60 -2.91 -0.02 5.39 15 Total: -1.00 -70.35 252.90 3.95 -66.39 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 0.51 Total: 12.93 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: 3.38 Total: -7.18 kcal Atomic # 7 Polarization: -74.42 SS G_CDS: -1.74 Total: -76.16 kcal Atomic # 8 Polarization: -40.58 SS G_CDS: -0.22 Total: -40.80 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Total: -70.35 3.95 -66.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084451826.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.796 kcal (2) G-P(sol) polarization free energy of solvation -70.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds