Wall clock time and date at job start Mon Mar 30 2020 03:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.47346 * 305.00026 * 10 9 7 12 12 C 1.50705 * 109.47390 * 64.99632 * 10 9 7 13 13 O 1.20827 * 119.99283 * 0.02562 * 12 10 9 14 14 O 1.34224 * 120.00486 * 180.02562 * 12 10 9 15 15 C 1.50699 * 109.47337 * 184.99952 * 10 9 7 16 16 C 1.38647 * 120.79102 * 299.71817 * 15 10 9 17 17 C 1.38202 * 119.16576 * 179.75601 * 16 15 10 18 18 N 1.31869 * 120.76280 * 0.53411 * 17 16 15 19 19 C 1.31869 * 121.72503 * 359.73662 * 18 17 16 20 20 C 1.38201 * 120.76445 * 359.97438 * 19 18 17 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 0.96695 * 117.00163 * 180.02562 * 14 12 10 25 25 H 1.08009 * 120.41641 * 0.02562 * 16 15 10 26 26 H 1.07996 * 119.61713 * 180.25315 * 17 16 15 27 27 H 1.07994 * 119.61982 * 180.02562 * 19 18 17 28 28 H 1.08010 * 120.42160 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9293 -3.5553 -0.8413 12 6 3.0280 -3.6538 1.2882 13 8 2.8125 -2.8050 2.1207 14 8 3.9647 -4.5892 1.5103 15 6 1.4957 -4.9637 -0.1233 16 6 0.5635 -5.3395 0.8317 17 6 -0.1082 -6.5381 0.6822 18 7 0.1368 -7.3247 -0.3475 19 6 1.0203 -7.0020 -1.2718 20 6 1.7261 -5.8165 -1.1919 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 4.4405 -4.5431 2.3509 25 1 0.3615 -4.7016 1.6795 26 1 -0.8388 -6.8361 1.4195 27 1 1.1938 -7.6716 -2.1012 28 1 2.4487 -5.5580 -1.9519 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084451828.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:49 Heat of formation + Delta-G solvation = -66.408444 kcal Electronic energy + Delta-G solvation = -14612.267521 eV Core-core repulsion = 12013.919969 eV Total energy + Delta-G solvation = -2598.347552 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.27684 -39.24763 -35.70009 -34.59428 -32.59787 -30.96354 -29.85537 -26.17243 -23.29033 -22.90838 -22.49771 -19.66883 -17.58303 -17.00270 -16.38062 -15.90550 -15.43191 -15.17359 -14.61991 -14.44510 -13.61973 -13.42135 -12.72568 -12.65132 -12.14906 -11.64556 -11.40130 -10.98941 -10.87571 -10.72778 -10.46128 -10.03146 -9.86640 -9.33942 -9.19330 -8.99149 -8.89522 -8.38434 -6.02554 -4.03531 1.38952 1.49909 2.89840 3.33662 3.37756 3.41202 3.62651 4.10755 4.45143 4.66647 4.96307 5.04117 5.34998 5.38438 5.42835 5.79359 5.82982 5.85555 6.07175 6.23427 6.44809 6.64629 6.93345 7.02955 7.44038 7.55938 7.90036 8.17766 8.26185 8.55969 8.95109 9.58691 11.09079 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.035335 B = 0.008334 C = 0.007503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.214355 B = 3358.876924 C = 3730.838403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.509 4.509 8 H 0.052 0.948 9 C 0.042 3.958 10 C -0.038 4.038 11 H 0.107 0.893 12 C 0.479 3.521 13 O -0.476 6.476 14 O -0.530 6.530 15 C -0.016 4.016 16 C -0.161 4.161 17 C 0.096 3.904 18 N -0.495 5.495 19 C 0.093 3.907 20 C -0.163 4.163 21 H 0.262 0.738 22 H 0.032 0.968 23 H 0.034 0.966 24 H 0.398 0.602 25 H 0.135 0.865 26 H 0.153 0.847 27 H 0.153 0.847 28 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.045 -11.196 -0.253 11.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.547 4.547 8 H 0.070 0.930 9 C 0.005 3.995 10 C -0.057 4.057 11 H 0.125 0.875 12 C 0.319 3.681 13 O -0.360 6.360 14 O -0.342 6.342 15 C -0.025 4.025 16 C -0.181 4.181 17 C -0.061 4.061 18 N -0.204 5.204 19 C -0.064 4.064 20 C -0.183 4.183 21 H 0.071 0.929 22 H 0.050 0.950 23 H 0.052 0.948 24 H 0.255 0.745 25 H 0.153 0.847 26 H 0.170 0.830 27 H 0.170 0.830 28 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.143 -11.621 -0.460 12.048 hybrid contribution 1.259 1.899 0.654 2.371 sum 4.403 -9.722 0.194 10.674 Atomic orbital electron populations 1.69932 1.05991 1.26850 1.50689 1.24901 0.94823 0.99142 0.95160 0.86630 0.79597 0.83035 0.78594 1.20268 1.21247 1.20210 1.20920 0.92609 0.90422 1.50782 0.92975 1.19148 0.92560 0.89018 0.98732 1.20475 0.97490 0.94690 0.93024 0.87468 1.23421 0.77621 0.77710 0.89349 1.90757 1.64299 1.35459 1.45444 1.84596 1.50757 1.54388 1.44482 1.20180 0.94369 0.94280 0.93628 1.22114 0.97258 0.98075 1.00646 1.22650 0.97599 0.90639 0.95171 1.67616 1.16369 1.33682 1.02756 1.22648 0.92071 0.94842 0.96837 1.22063 1.01681 0.95390 0.99191 0.92856 0.94965 0.94819 0.74512 0.84736 0.82967 0.83013 0.84710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.67 13.29 55.43 0.74 -25.94 15 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 15 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 15 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 15 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 7 C -0.51 -14.13 7.75 -34.44 -0.27 -14.40 15 8 H 0.05 1.43 7.61 -52.49 -0.40 1.03 15 9 C 0.04 1.05 3.86 -27.88 -0.11 0.94 15 10 C -0.04 -0.74 2.46 -92.92 -0.23 -0.97 15 11 H 0.11 1.96 7.95 -51.93 -0.41 1.55 15 12 C 0.48 9.41 6.94 36.01 0.25 9.66 15 13 O -0.48 -11.17 15.74 -18.75 -0.30 -11.46 15 14 O -0.53 -8.18 13.34 -39.24 -0.52 -8.70 15 15 C -0.02 -0.28 4.72 -104.32 -0.49 -0.77 15 16 C -0.16 -2.68 9.02 -39.44 -0.36 -3.04 15 17 C 0.10 1.43 11.18 -17.55 -0.20 1.23 15 18 N -0.49 -7.61 10.36 -13.26 -0.14 -7.75 15 19 C 0.09 1.28 11.18 -17.55 -0.20 1.09 15 20 C -0.16 -2.40 9.76 -39.44 -0.39 -2.78 15 21 H 0.26 7.41 8.31 -40.82 -0.34 7.07 15 22 H 0.03 0.87 7.50 -51.93 -0.39 0.48 15 23 H 0.03 0.88 8.14 -51.93 -0.42 0.45 15 24 H 0.40 4.32 9.10 45.56 0.41 4.74 15 25 H 0.13 2.28 7.75 -52.48 -0.41 1.88 15 26 H 0.15 1.82 8.06 -52.49 -0.42 1.40 15 27 H 0.15 1.58 8.06 -52.49 -0.42 1.16 15 28 H 0.14 1.65 8.01 -52.48 -0.42 1.23 15 LS Contribution 256.40 15.07 3.86 3.86 Total: -1.00 -33.15 256.40 -5.47 -38.62 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -2.02 Total: 1.88 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -2.08 Total: -7.38 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: 0.60 Total: -33.69 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.82 Total: -20.16 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -33.15 -5.47 -38.62 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084451828.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.790 kcal (2) G-P(sol) polarization free energy of solvation -33.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds