Wall clock time and date at job start Mon Mar 30 2020 03:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.47346 * 305.00026 * 10 9 7 12 12 C 1.50705 * 109.47390 * 64.99632 * 10 9 7 13 13 O 1.20827 * 119.99283 * 0.02562 * 12 10 9 14 14 O 1.34224 * 120.00486 * 180.02562 * 12 10 9 15 15 C 1.50699 * 109.47337 * 184.99952 * 10 9 7 16 16 C 1.38647 * 120.79102 * 299.71817 * 15 10 9 17 17 C 1.38202 * 119.16576 * 179.75601 * 16 15 10 18 18 N 1.31869 * 120.76280 * 0.53411 * 17 16 15 19 19 C 1.31869 * 121.72503 * 359.73662 * 18 17 16 20 20 C 1.38201 * 120.76445 * 359.97438 * 19 18 17 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 0.96695 * 117.00163 * 180.02562 * 14 12 10 25 25 H 1.08009 * 120.41641 * 0.02562 * 16 15 10 26 26 H 1.07996 * 119.61713 * 180.25315 * 17 16 15 27 27 H 1.07994 * 119.61982 * 180.02562 * 19 18 17 28 28 H 1.08010 * 120.42160 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9293 -3.5553 -0.8413 12 6 3.0280 -3.6538 1.2882 13 8 2.8125 -2.8050 2.1207 14 8 3.9647 -4.5892 1.5103 15 6 1.4957 -4.9637 -0.1233 16 6 0.5635 -5.3395 0.8317 17 6 -0.1082 -6.5381 0.6822 18 7 0.1368 -7.3247 -0.3475 19 6 1.0203 -7.0020 -1.2718 20 6 1.7261 -5.8165 -1.1919 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 4.4405 -4.5431 2.3509 25 1 0.3615 -4.7016 1.6795 26 1 -0.8388 -6.8361 1.4195 27 1 1.1938 -7.6716 -2.1012 28 1 2.4487 -5.5580 -1.9519 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084451828.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:49 Heat of formation + Delta-G solvation = -89.317114 kcal Electronic energy + Delta-G solvation = -14613.260915 eV Core-core repulsion = 12013.919969 eV Total energy + Delta-G solvation = -2599.340946 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.66572 -40.60600 -37.18431 -36.21399 -34.53143 -32.12144 -31.48957 -28.02496 -24.78598 -24.41778 -23.90654 -21.20687 -19.09364 -18.76312 -17.80834 -17.52606 -16.78619 -16.53285 -16.36680 -15.98409 -14.89176 -14.60628 -14.38293 -14.25830 -13.88769 -13.42126 -13.00347 -12.67194 -12.56060 -12.43157 -12.32082 -11.80565 -11.57557 -11.31076 -10.57380 -10.44230 -10.40869 -10.04588 -8.19453 -6.26780 0.23448 0.24941 1.34234 1.38302 1.41794 1.48592 2.22038 2.40929 2.91953 3.16045 3.55585 3.65007 3.85979 4.18589 4.23880 4.27333 4.43933 4.66773 4.85515 4.92378 5.02773 5.33379 5.35557 5.56040 5.66189 5.76289 5.79826 6.14284 6.80901 7.02798 7.13939 7.39287 8.92548 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.035335 B = 0.008334 C = 0.007503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.214355 B = 3358.876924 C = 3730.838403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.957 3.043 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.278 1.278 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.052 3.948 10 C -0.033 4.033 11 H 0.125 0.875 12 C 0.489 3.511 13 O -0.524 6.524 14 O -0.511 6.511 15 C -0.036 4.036 16 C -0.179 4.179 17 C 0.097 3.903 18 N -0.506 5.506 19 C 0.098 3.902 20 C -0.160 4.160 21 H 0.263 0.737 22 H -0.001 1.001 23 H 0.014 0.986 24 H 0.421 0.579 25 H 0.118 0.882 26 H 0.177 0.823 27 H 0.192 0.808 28 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.363 -12.376 -1.218 13.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.194 4.194 3 Si 0.782 3.218 4 H -0.185 1.185 5 H -0.208 1.208 6 H -0.203 1.203 7 C -0.558 4.558 8 H 0.071 0.929 9 C 0.015 3.985 10 C -0.052 4.052 11 H 0.142 0.858 12 C 0.331 3.669 13 O -0.412 6.412 14 O -0.325 6.325 15 C -0.044 4.044 16 C -0.199 4.199 17 C -0.059 4.059 18 N -0.215 5.215 19 C -0.058 4.058 20 C -0.179 4.179 21 H 0.072 0.928 22 H 0.017 0.983 23 H 0.032 0.968 24 H 0.282 0.718 25 H 0.136 0.864 26 H 0.194 0.806 27 H 0.209 0.791 28 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 4.494 -12.837 -1.426 13.675 hybrid contribution 0.873 2.143 0.958 2.504 sum 5.368 -10.694 -0.468 11.974 Atomic orbital electron populations 1.70061 1.07534 1.27688 1.52009 1.25793 0.95691 1.02909 0.95021 0.85619 0.78425 0.78777 0.78947 1.18542 1.20758 1.20325 1.21321 0.92861 0.91814 1.49793 0.92883 1.18839 0.92978 0.90561 0.96097 1.20182 0.96924 0.94201 0.93866 0.85769 1.23308 0.77588 0.77298 0.88667 1.90745 1.65886 1.37599 1.46949 1.84512 1.49573 1.52383 1.46045 1.20081 0.95132 0.93878 0.95299 1.22111 0.98285 0.98920 1.00611 1.22981 0.97493 0.89756 0.95641 1.67724 1.16939 1.33776 1.03106 1.23294 0.90604 0.94850 0.97089 1.22355 1.01998 0.95008 0.98548 0.92847 0.98267 0.96778 0.71812 0.86364 0.80565 0.79134 0.82014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.91 13.29 21.45 0.28 -56.63 15 2 C 0.00 0.20 5.46 84.66 0.46 0.66 15 3 Si 0.96 45.11 29.54 68.60 2.03 47.14 15 4 H -0.26 -11.52 7.11 99.48 0.71 -10.81 15 5 H -0.28 -12.97 7.11 99.48 0.71 -12.27 15 6 H -0.28 -13.04 7.11 99.48 0.71 -12.33 15 7 C -0.52 -29.30 7.75 25.60 0.20 -29.10 15 8 H 0.05 2.91 7.61 -2.91 -0.02 2.88 15 9 C 0.05 2.68 3.86 29.85 0.12 2.80 15 10 C -0.03 -1.28 2.46 -12.29 -0.03 -1.31 15 11 H 0.12 4.38 7.95 -2.39 -0.02 4.36 15 12 C 0.49 19.06 6.94 71.24 0.49 19.56 15 13 O -0.52 -25.02 15.74 21.96 0.35 -24.68 15 14 O -0.51 -14.75 13.34 -51.36 -0.69 -15.44 15 15 C -0.04 -1.20 4.72 -19.67 -0.09 -1.29 15 16 C -0.18 -5.98 9.02 22.36 0.20 -5.77 15 17 C 0.10 2.78 11.18 84.68 0.95 3.73 15 18 N -0.51 -14.31 10.36 -195.86 -2.03 -16.34 15 19 C 0.10 2.39 11.18 84.68 0.95 3.34 15 20 C -0.16 -4.24 9.76 22.36 0.22 -4.03 15 21 H 0.26 15.18 8.31 -92.71 -0.77 14.41 15 22 H 0.00 -0.06 7.50 -2.39 -0.02 -0.08 15 23 H 0.01 0.76 8.14 -2.39 -0.02 0.74 15 24 H 0.42 8.18 9.10 -74.06 -0.67 7.51 15 25 H 0.12 4.24 7.75 -2.91 -0.02 4.22 15 26 H 0.18 3.98 8.06 -2.91 -0.02 3.96 15 27 H 0.19 3.07 8.06 -2.91 -0.02 3.04 15 28 H 0.16 3.35 8.01 -2.91 -0.02 3.32 15 Total: -1.00 -72.33 256.40 3.91 -68.43 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: 0.51 Total: 8.95 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: 3.46 Total: -11.42 kcal Atomic # 7 Polarization: -71.23 SS G_CDS: -1.74 Total: -72.97 kcal Atomic # 8 Polarization: -39.78 SS G_CDS: -0.34 Total: -40.12 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -72.33 3.91 -68.43 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084451828.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.891 kcal (2) G-P(sol) polarization free energy of solvation -72.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds