Wall clock time and date at job start Mon Mar 30 2020 03:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99527 * 2 1 4 4 H 1.48507 * 109.46859 * 239.99956 * 3 2 1 5 5 H 1.48495 * 109.47402 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47071 * 120.00403 * 3 2 1 7 7 C 1.37875 * 120.00477 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00308 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99712 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.47547 * 300.00208 * 9 7 2 11 11 C 1.53004 * 109.46967 * 60.00590 * 9 7 2 12 12 C 1.50692 * 109.47085 * 184.99727 * 11 9 7 13 13 O 1.20826 * 120.00301 * 359.97438 * 12 11 9 14 14 O 1.34231 * 120.00062 * 179.97438 * 12 11 9 15 15 C 1.50707 * 109.46864 * 179.97438 * 9 7 2 16 16 C 1.38227 * 119.62059 * 325.02838 * 15 9 7 17 17 C 1.38627 * 119.15702 * 179.74122 * 16 15 9 18 18 C 1.38669 * 118.42389 * 0.47826 * 17 16 15 19 19 C 1.38186 * 119.16143 * 359.49762 * 18 17 16 20 20 N 1.31856 * 119.61137 * 145.00268 * 15 9 7 21 21 H 0.96999 * 120.00426 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.46959 * 304.99872 * 11 9 7 23 23 H 1.09003 * 109.46963 * 64.99521 * 11 9 7 24 24 H 0.96699 * 116.99988 * 179.97438 * 14 12 11 25 25 H 1.07997 * 120.41915 * 359.97438 * 16 15 9 26 26 H 1.08008 * 120.78688 * 180.22921 * 17 16 15 27 27 H 1.08002 * 120.42244 * 179.78279 * 18 17 16 28 28 H 1.07996 * 119.61757 * 180.25243 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6248 -2.5571 0.8896 11 6 0.3712 -2.5799 -1.2496 12 6 -0.4733 -3.8266 -1.1892 13 8 -0.3805 -4.5740 -0.2445 14 8 -1.3286 -4.1067 -2.1851 15 6 2.2306 -3.6445 -0.0018 16 6 3.4224 -3.5235 -0.6914 17 6 4.3187 -4.5810 -0.6817 18 6 3.9769 -5.7296 0.0161 19 6 2.7673 -5.7776 0.6826 20 7 1.9408 -4.7503 0.6554 21 1 -0.4851 0.8400 0.0004 22 1 -0.2763 -1.7043 -1.2951 23 1 1.0027 -2.6114 -2.1375 24 1 -1.8486 -4.9177 -2.1021 25 1 3.6540 -2.6153 -1.2278 26 1 5.2592 -4.5135 -1.2085 27 1 4.6495 -6.5742 0.0422 28 1 2.4955 -6.6670 1.2317 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084451832.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:36 Heat of formation + Delta-G solvation = -59.178492 kcal Electronic energy + Delta-G solvation = -14886.700996 eV Core-core repulsion = 12288.666958 eV Total energy + Delta-G solvation = -2598.034038 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.69321 -38.90788 -35.40229 -34.35929 -31.79949 -31.39284 -29.16095 -26.26099 -23.52595 -22.63118 -21.32540 -19.52057 -17.22735 -16.50564 -16.18126 -15.39998 -15.20557 -14.90449 -14.53272 -14.26537 -13.20491 -12.88073 -12.59801 -12.18784 -12.00641 -11.43133 -11.10912 -10.96874 -10.65077 -10.62745 -10.31833 -9.92979 -9.60378 -9.30385 -9.03446 -8.61429 -8.33794 -8.09893 -6.20022 -4.27778 1.90277 2.05168 3.23691 3.26062 3.30246 3.32004 4.04656 4.29728 4.65507 5.14991 5.22493 5.38702 5.58510 5.76927 5.96377 6.25039 6.36600 6.44132 6.58462 6.77849 6.78240 6.91521 7.23959 7.40189 7.51431 7.71565 7.81700 8.12888 8.72543 8.87493 8.99928 9.38723 10.87084 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.023433 B = 0.011969 C = 0.008663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.601364 B = 2338.845438 C = 3231.431618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.518 4.518 8 H 0.067 0.933 9 C 0.103 3.897 10 H 0.059 0.941 11 C -0.099 4.099 12 C 0.455 3.545 13 O -0.495 6.495 14 O -0.534 6.534 15 C 0.162 3.838 16 C -0.163 4.163 17 C -0.093 4.093 18 C -0.203 4.203 19 C 0.084 3.916 20 N -0.455 5.455 21 H 0.267 0.733 22 H 0.138 0.862 23 H 0.077 0.923 24 H 0.390 0.610 25 H 0.139 0.861 26 H 0.121 0.879 27 H 0.119 0.881 28 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.562 -6.273 -3.733 8.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.728 3.272 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.556 4.556 8 H 0.085 0.915 9 C 0.084 3.916 10 H 0.077 0.923 11 C -0.137 4.137 12 C 0.298 3.702 13 O -0.381 6.381 14 O -0.346 6.346 15 C 0.025 3.975 16 C -0.183 4.183 17 C -0.119 4.119 18 C -0.223 4.223 19 C -0.074 4.074 20 N -0.164 5.164 21 H 0.077 0.923 22 H 0.156 0.844 23 H 0.095 0.905 24 H 0.246 0.754 25 H 0.157 0.843 26 H 0.139 0.861 27 H 0.137 0.863 28 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.879 -6.042 -3.034 7.348 hybrid contribution 0.951 0.266 -0.427 1.076 sum 3.830 -5.776 -3.461 7.747 Atomic orbital electron populations 1.69787 1.06003 1.27394 1.49391 1.24996 0.94943 0.99422 0.94410 0.86512 0.79531 0.82388 0.78812 1.20011 1.21100 1.20093 1.21128 0.93239 0.89269 1.51959 0.91482 1.17638 0.91036 0.88573 0.94388 0.92320 1.21746 0.97808 0.92991 1.01168 1.24779 0.77998 0.88424 0.79046 1.90763 1.64762 1.49424 1.33147 1.84658 1.53193 1.46866 1.49878 1.22079 0.93572 0.92756 0.89140 1.22197 0.95244 0.99473 1.01389 1.21484 0.99075 0.93481 0.97905 1.21921 0.99229 0.99064 1.02108 1.22700 0.90465 0.97324 0.96919 1.67832 1.31364 0.99691 1.17474 0.92285 0.84425 0.90500 0.75426 0.84285 0.86111 0.86339 0.84266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.72 11.29 55.43 0.63 -23.09 15 2 C 0.06 1.67 5.29 -17.82 -0.09 1.57 15 3 Si 0.90 19.95 29.54 -169.99 -5.02 14.93 15 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 15 5 H -0.29 -6.32 7.11 56.52 0.40 -5.92 15 6 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 7 C -0.52 -13.24 7.89 -34.44 -0.27 -13.52 15 8 H 0.07 1.66 6.33 -52.49 -0.33 1.33 15 9 C 0.10 2.57 1.77 -92.92 -0.16 2.40 15 10 H 0.06 1.68 7.96 -51.93 -0.41 1.26 15 11 C -0.10 -2.27 5.11 -27.88 -0.14 -2.41 15 12 C 0.45 9.93 8.08 36.00 0.29 10.22 15 13 O -0.50 -11.90 14.21 -18.75 -0.27 -12.17 15 14 O -0.53 -9.59 13.42 -39.26 -0.53 -10.12 15 15 C 0.16 3.71 5.20 -82.58 -0.43 3.28 15 16 C -0.16 -3.26 8.87 -39.44 -0.35 -3.61 15 17 C -0.09 -1.57 10.18 -39.28 -0.40 -1.97 15 18 C -0.20 -3.31 10.11 -39.44 -0.40 -3.71 15 19 C 0.08 1.56 11.18 -17.55 -0.20 1.37 15 20 N -0.46 -10.37 8.13 -9.47 -0.08 -10.44 15 21 H 0.27 6.82 8.31 -40.82 -0.34 6.48 15 22 H 0.14 3.41 5.95 -51.93 -0.31 3.10 15 23 H 0.08 1.65 8.14 -51.93 -0.42 1.23 15 24 H 0.39 5.08 9.10 45.56 0.41 5.50 15 25 H 0.14 2.69 6.75 -52.49 -0.35 2.34 15 26 H 0.12 1.62 8.06 -52.48 -0.42 1.20 15 27 H 0.12 1.51 8.06 -52.49 -0.42 1.09 15 28 H 0.14 2.19 8.06 -52.49 -0.42 1.76 15 LS Contribution 248.31 15.07 3.74 3.74 Total: -1.00 -29.96 248.31 -5.50 -35.46 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -1.82 Total: 8.07 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -2.16 Total: -6.37 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: 0.55 Total: -33.54 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.79 Total: -22.29 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -29.96 -5.50 -35.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084451832.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.719 kcal (2) G-P(sol) polarization free energy of solvation -29.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds