Wall clock time and date at job start Mon Mar 30 2020 03:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99527 * 2 1 4 4 H 1.48507 * 109.46859 * 239.99956 * 3 2 1 5 5 H 1.48495 * 109.47402 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47071 * 120.00403 * 3 2 1 7 7 C 1.37875 * 120.00477 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00308 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99712 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.47547 * 300.00208 * 9 7 2 11 11 C 1.53004 * 109.46967 * 60.00590 * 9 7 2 12 12 C 1.50692 * 109.47085 * 184.99727 * 11 9 7 13 13 O 1.20826 * 120.00301 * 359.97438 * 12 11 9 14 14 O 1.34231 * 120.00062 * 179.97438 * 12 11 9 15 15 C 1.50707 * 109.46864 * 179.97438 * 9 7 2 16 16 C 1.38227 * 119.62059 * 325.02838 * 15 9 7 17 17 C 1.38627 * 119.15702 * 179.74122 * 16 15 9 18 18 C 1.38669 * 118.42389 * 0.47826 * 17 16 15 19 19 C 1.38186 * 119.16143 * 359.49762 * 18 17 16 20 20 N 1.31856 * 119.61137 * 145.00268 * 15 9 7 21 21 H 0.96999 * 120.00426 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.46959 * 304.99872 * 11 9 7 23 23 H 1.09003 * 109.46963 * 64.99521 * 11 9 7 24 24 H 0.96699 * 116.99988 * 179.97438 * 14 12 11 25 25 H 1.07997 * 120.41915 * 359.97438 * 16 15 9 26 26 H 1.08008 * 120.78688 * 180.22921 * 17 16 15 27 27 H 1.08002 * 120.42244 * 179.78279 * 18 17 16 28 28 H 1.07996 * 119.61757 * 180.25243 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6248 -2.5571 0.8896 11 6 0.3712 -2.5799 -1.2496 12 6 -0.4733 -3.8266 -1.1892 13 8 -0.3805 -4.5740 -0.2445 14 8 -1.3286 -4.1067 -2.1851 15 6 2.2306 -3.6445 -0.0018 16 6 3.4224 -3.5235 -0.6914 17 6 4.3187 -4.5810 -0.6817 18 6 3.9769 -5.7296 0.0161 19 6 2.7673 -5.7776 0.6826 20 7 1.9408 -4.7503 0.6554 21 1 -0.4851 0.8400 0.0004 22 1 -0.2763 -1.7043 -1.2951 23 1 1.0027 -2.6114 -2.1375 24 1 -1.8486 -4.9177 -2.1021 25 1 3.6540 -2.6153 -1.2278 26 1 5.2592 -4.5135 -1.2085 27 1 4.6495 -6.5742 0.0422 28 1 2.4955 -6.6670 1.2317 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084451832.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:35 Heat of formation + Delta-G solvation = -79.101357 kcal Electronic energy + Delta-G solvation = -14887.564916 eV Core-core repulsion = 12288.666958 eV Total energy + Delta-G solvation = -2598.897958 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.31524 -40.49290 -37.04861 -36.17806 -33.46404 -33.01414 -30.77545 -28.13126 -25.25106 -24.09851 -22.94042 -21.23952 -18.95616 -18.26921 -17.77182 -17.12003 -16.78561 -16.50094 -16.28323 -15.78645 -14.81405 -14.46965 -14.24839 -13.83748 -13.60833 -13.00621 -12.88658 -12.74297 -12.37700 -12.28272 -12.13145 -11.70578 -11.44145 -11.10867 -10.57791 -10.49064 -9.89731 -9.60761 -8.15475 -6.30193 0.44234 0.64774 1.48798 1.49071 1.51672 1.57720 2.40250 2.49213 3.11862 3.22327 3.76544 4.16776 4.19111 4.43348 4.52169 4.56427 4.64430 4.87033 5.05019 5.12790 5.31691 5.41453 5.54766 5.66105 5.83229 5.85920 6.05133 6.23877 6.76655 7.26440 7.38767 7.49752 8.91497 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.023433 B = 0.011969 C = 0.008663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.601364 B = 2338.845438 C = 3231.431618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.019 3.981 3 Si 0.964 3.036 4 H -0.261 1.261 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.529 4.529 8 H 0.072 0.928 9 C 0.107 3.893 10 H 0.004 0.996 11 C -0.094 4.094 12 C 0.462 3.538 13 O -0.520 6.520 14 O -0.522 6.522 15 C 0.129 3.871 16 C -0.175 4.175 17 C -0.084 4.084 18 C -0.183 4.183 19 C 0.067 3.933 20 N -0.497 5.497 21 H 0.267 0.733 22 H 0.118 0.882 23 H 0.089 0.911 24 H 0.415 0.585 25 H 0.139 0.861 26 H 0.164 0.836 27 H 0.166 0.834 28 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.612 -7.224 -4.747 10.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.181 4.181 3 Si 0.789 3.211 4 H -0.186 1.186 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.090 0.910 9 C 0.088 3.912 10 H 0.022 0.978 11 C -0.132 4.132 12 C 0.305 3.695 13 O -0.408 6.408 14 O -0.336 6.336 15 C -0.008 4.008 16 C -0.195 4.195 17 C -0.110 4.110 18 C -0.203 4.203 19 C -0.091 4.091 20 N -0.206 5.206 21 H 0.076 0.924 22 H 0.135 0.865 23 H 0.108 0.892 24 H 0.275 0.725 25 H 0.156 0.844 26 H 0.181 0.819 27 H 0.183 0.817 28 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 4.918 -7.008 -4.072 9.480 hybrid contribution 0.303 0.416 -0.109 0.526 sum 5.220 -6.593 -4.181 9.391 Atomic orbital electron populations 1.69927 1.07399 1.28026 1.50248 1.25779 0.95658 1.02604 0.94033 0.85514 0.78277 0.78278 0.79053 1.18563 1.21074 1.20183 1.21406 0.93571 0.89959 1.51737 0.91022 1.17378 0.91155 0.89950 0.92710 0.97822 1.21511 0.97787 0.92960 1.00986 1.24399 0.78155 0.87764 0.79165 1.90755 1.65647 1.50141 1.34230 1.84565 1.52569 1.48392 1.48031 1.21760 0.94564 0.92667 0.91773 1.22221 0.94968 1.00824 1.01508 1.21946 0.99688 0.92246 0.97133 1.22386 0.98433 1.00045 0.99433 1.23239 0.91215 0.97037 0.97574 1.67685 1.33542 1.00741 1.18651 0.92367 0.86458 0.89242 0.72527 0.84360 0.81854 0.81655 0.81878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.64 11.29 21.45 0.24 -50.40 15 2 C 0.02 0.99 5.29 84.65 0.45 1.44 15 3 Si 0.96 41.14 29.54 68.60 2.03 43.17 15 4 H -0.26 -10.50 7.11 99.48 0.71 -9.80 15 5 H -0.29 -12.06 7.11 99.48 0.71 -11.36 15 6 H -0.28 -11.75 7.11 99.48 0.71 -11.05 15 7 C -0.53 -27.75 7.89 25.60 0.20 -27.55 15 8 H 0.07 3.59 6.33 -2.91 -0.02 3.57 15 9 C 0.11 5.59 1.77 -12.28 -0.02 5.57 15 10 H 0.00 0.22 7.96 -2.39 -0.02 0.20 15 11 C -0.09 -4.47 5.11 29.85 0.15 -4.32 15 12 C 0.46 20.50 8.08 71.23 0.58 21.07 15 13 O -0.52 -25.60 14.21 21.97 0.31 -25.29 15 14 O -0.52 -18.28 13.42 -51.43 -0.69 -18.97 15 15 C 0.13 6.01 5.20 42.55 0.22 6.23 15 16 C -0.18 -6.82 8.87 22.36 0.20 -6.62 15 17 C -0.08 -2.53 10.18 22.47 0.23 -2.30 15 18 C -0.18 -5.22 10.11 22.36 0.23 -5.00 15 19 C 0.07 2.37 11.18 84.67 0.95 3.32 15 20 N -0.50 -22.82 8.13 -183.88 -1.49 -24.31 15 21 H 0.27 14.01 8.31 -92.71 -0.77 13.24 15 22 H 0.12 6.06 5.95 -2.39 -0.01 6.05 15 23 H 0.09 3.92 8.14 -2.39 -0.02 3.90 15 24 H 0.41 10.14 9.10 -74.06 -0.67 9.47 15 25 H 0.14 5.25 6.75 -2.91 -0.02 5.23 15 26 H 0.16 3.49 8.06 -2.91 -0.02 3.47 15 27 H 0.17 3.17 8.06 -2.91 -0.02 3.15 15 28 H 0.16 4.76 8.06 -2.91 -0.02 4.74 15 Total: -1.00 -67.24 248.31 4.09 -63.16 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 0.52 Total: 20.81 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 3.18 Total: -8.16 kcal Atomic # 7 Polarization: -73.46 SS G_CDS: -1.25 Total: -74.71 kcal Atomic # 8 Polarization: -43.88 SS G_CDS: -0.38 Total: -44.26 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Total: -67.24 4.09 -63.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084451832.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.946 kcal (2) G-P(sol) polarization free energy of solvation -67.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds